Wall clock time and date at job start Mon Mar 30 2020 03:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.47367 * 2 1 4 4 O 1.42903 * 109.47424 * 240.00157 * 2 1 3 5 5 C 1.52999 * 109.47512 * 119.99812 * 2 1 3 6 6 N 1.46499 * 109.47499 * 185.00284 * 5 2 1 7 7 N 1.40128 * 126.49014 * 270.11511 * 6 5 2 8 8 N 1.28668 * 108.93304 * 180.28937 * 7 6 5 9 9 C 1.34843 * 109.63319 * 359.76246 * 8 7 6 10 10 C 1.41498 * 126.01930 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00045 * 185.48506 * 10 9 8 12 12 C 1.39738 * 119.99802 * 5.48105 * 10 9 8 13 13 N 1.30983 * 120.00115 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99862 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46949 * 60.00471 * 14 12 10 16 16 H 1.48501 * 109.47309 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47423 * 300.00613 * 14 12 10 18 18 C 1.35011 * 126.49232 * 89.99929 * 6 5 2 19 19 C 1.50702 * 126.77349 * 359.97438 * 18 6 5 20 20 C 1.52999 * 117.49839 * 132.29389 * 19 18 6 21 21 C 1.53000 * 117.49947 * 63.66852 * 19 18 6 22 22 H 1.09003 * 109.46647 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47145 * 299.99830 * 1 2 3 24 24 H 1.09003 * 109.47233 * 60.00554 * 1 2 3 25 25 H 0.96697 * 113.99915 * 59.99750 * 4 2 1 26 26 H 1.09009 * 109.47048 * 64.99868 * 5 2 1 27 27 H 1.08999 * 109.47000 * 305.00446 * 5 2 1 28 28 H 0.97001 * 120.00108 * 179.97438 * 13 12 10 29 29 H 1.08995 * 115.54592 * 277.99546 * 19 18 6 30 30 H 1.09004 * 117.49991 * 359.97438 * 20 19 18 31 31 H 1.08996 * 117.49989 * 145.02091 * 20 19 18 32 32 H 1.08998 * 117.49913 * 214.97983 * 21 19 18 33 33 H 1.08996 * 117.49746 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5001 -0.6177 1.3110 7 7 4.4232 -1.5133 0.7547 8 7 5.6139 -1.1011 1.0153 9 6 5.5518 0.0444 1.7239 10 6 6.6567 0.7935 2.1933 11 1 6.4964 1.6518 2.8287 12 6 7.9553 0.4225 1.8345 13 7 8.1497 -0.6183 1.0634 14 14 9.4139 1.4117 2.4535 15 1 9.4321 1.3906 3.9383 16 1 10.6717 0.8162 1.9352 17 1 9.2977 2.8143 1.9798 18 6 4.2111 0.3596 1.9127 19 6 3.6599 1.5534 2.6491 20 6 4.2524 1.8709 4.0235 21 6 2.8423 1.2871 3.9146 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 1.7210 -0.2701 -1.9979 26 1 1.7517 -1.7715 1.2056 27 1 1.6054 -0.2617 2.1369 28 1 9.0511 -0.8757 0.8141 29 1 3.3600 2.3941 2.0236 30 1 5.0406 1.2161 4.3953 31 1 4.3423 2.9207 4.3025 32 1 2.0046 1.9529 4.1219 33 1 2.7034 0.2486 4.2148 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544709.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:28 Heat of formation + Delta-G solvation = 60.010955 kcal Electronic energy + Delta-G solvation = -17084.010672 eV Core-core repulsion = 14340.588730 eV Total energy + Delta-G solvation = -2743.421942 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.99141 -37.34580 -36.30952 -33.64683 -32.63408 -30.50234 -29.12056 -26.51474 -24.82205 -22.47270 -21.94003 -21.37083 -20.02423 -18.76507 -17.32998 -16.98921 -15.55631 -14.92438 -14.80255 -14.55888 -13.98129 -13.56272 -13.22616 -12.81566 -12.50657 -12.16319 -11.97371 -11.72456 -11.13522 -11.08238 -11.04259 -10.91178 -10.66153 -10.25037 -9.98937 -9.88395 -9.67211 -9.60862 -9.18952 -8.67615 -8.32293 -7.29319 -6.28652 -4.07083 2.90193 3.22748 3.24419 3.26097 3.66428 4.19321 4.35505 4.38206 4.43289 4.96479 5.11007 5.22275 5.32031 5.41283 5.48921 5.58278 5.64654 5.72814 5.85003 5.87043 6.00042 6.09859 6.19964 6.38981 6.58618 6.80450 7.05240 7.24614 7.47943 7.61100 7.85017 8.26413 8.53704 8.92899 9.17779 10.33345 10.68472 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.029034 B = 0.008094 C = 0.006773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.144079 B = 3458.675914 C = 4133.211056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.057 0.943 4 O -0.549 6.549 5 C 0.146 3.854 6 N -0.368 5.368 7 N -0.111 5.111 8 N -0.234 5.234 9 C 0.161 3.839 10 C -0.449 4.449 11 H 0.084 0.916 12 C 0.072 3.928 13 N -0.778 5.778 14 Si 0.904 3.096 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.101 4.101 19 C -0.043 4.043 20 C -0.155 4.155 21 C -0.194 4.194 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.370 0.630 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.271 0.729 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.285 5.131 1.768 13.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.026 3.974 3 H 0.075 0.925 4 O -0.353 6.353 5 C 0.021 3.979 6 N -0.163 5.163 7 N -0.087 5.087 8 N -0.107 5.107 9 C 0.031 3.969 10 C -0.485 4.485 11 H 0.102 0.898 12 C -0.146 4.146 13 N -0.404 5.404 14 Si 0.730 3.270 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.231 4.231 19 C -0.063 4.063 20 C -0.192 4.192 21 C -0.232 4.232 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.216 0.784 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.646 3.248 1.290 12.159 hybrid contribution 0.085 1.830 0.345 1.864 sum -11.561 5.078 1.635 12.733 Atomic orbital electron populations 1.22470 0.96153 1.02883 1.02535 1.22207 0.92219 0.96006 0.86990 0.92469 1.86735 1.76951 1.56439 1.15142 1.21399 0.78152 1.02121 0.96191 1.49267 1.05214 1.19947 1.41917 1.81569 0.92874 1.14611 1.19654 1.75122 1.10224 1.11390 1.13925 1.18929 0.90152 0.91575 0.96250 1.18575 0.88539 1.12026 1.29395 0.89815 1.25797 0.99989 0.94740 0.94114 1.70017 1.22526 1.21246 1.26612 0.86455 0.80461 0.80401 0.79694 1.19362 1.20701 1.19406 1.20465 0.92196 0.96812 1.13631 1.19716 1.02662 0.95628 0.88336 1.22862 0.95894 1.01052 0.99412 1.22993 0.95015 1.01446 1.03707 0.91622 0.91471 0.92159 0.78438 0.89467 0.88798 0.91815 0.88766 0.87705 0.89279 0.89577 0.89526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 9.53 37.16 0.35 -1.48 16 2 C 0.09 1.26 3.82 -26.73 -0.10 1.16 16 3 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 4 O -0.55 -9.11 13.27 -35.23 -0.47 -9.58 16 5 C 0.15 2.47 5.97 -4.04 -0.02 2.44 16 6 N -0.37 -8.44 3.58 -56.17 -0.20 -8.64 16 7 N -0.11 -3.06 13.74 60.35 0.83 -2.24 16 8 N -0.23 -7.09 10.58 32.05 0.34 -6.75 16 9 C 0.16 4.54 6.70 -85.01 -0.57 3.98 16 10 C -0.45 -12.42 8.67 -37.78 -0.33 -12.75 16 11 H 0.08 2.13 6.26 -52.49 -0.33 1.80 16 12 C 0.07 1.97 5.49 -17.35 -0.10 1.87 16 13 N -0.78 -22.66 11.94 55.54 0.66 -21.99 16 14 Si 0.90 19.98 29.56 -169.99 -5.02 14.95 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 18 C -0.10 -2.40 6.56 -80.90 -0.53 -2.93 16 19 C -0.04 -0.80 5.68 -91.77 -0.52 -1.32 16 20 C -0.15 -2.64 8.83 -26.73 -0.24 -2.87 16 21 C -0.19 -2.95 9.26 -26.73 -0.25 -3.20 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.37 4.30 9.08 45.56 0.41 4.71 16 26 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 27 H 0.09 1.33 6.95 -51.93 -0.36 0.97 16 28 H 0.27 7.28 8.30 -40.82 -0.34 6.94 16 29 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 30 H 0.10 2.03 7.48 -51.93 -0.39 1.64 16 31 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 285.83 15.07 4.31 4.31 Total: -1.00 -34.41 285.83 -5.46 -39.87 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.60 Total: 5.18 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: -2.30 Total: -15.11 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 1.63 Total: -39.62 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.47 Total: -9.58 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -34.41 -5.46 -39.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544709.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.882 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds