Wall clock time and date at job start Mon Mar 30 2020 04:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47375 * 165.82276 * 3 2 1 5 5 C 1.36939 * 120.00053 * 262.82430 * 4 3 2 6 6 H 1.08001 * 120.00329 * 142.32328 * 5 4 3 7 7 C 1.38815 * 119.99578 * 322.31917 * 5 4 3 8 8 N 1.31620 * 119.99471 * 156.55764 * 7 5 4 9 9 Si 1.86799 * 120.00072 * 336.55832 * 7 5 4 10 10 H 1.48498 * 109.46970 * 95.21496 * 9 7 5 11 11 H 1.48508 * 109.47037 * 215.21456 * 9 7 5 12 12 H 1.48499 * 109.47424 * 335.21444 * 9 7 5 13 13 C 1.46494 * 120.00071 * 82.81629 * 4 3 2 14 14 H 1.09006 * 108.87455 * 1.39895 * 13 4 3 15 15 C 1.45541 * 108.89913 * 120.00438 * 13 4 3 16 16 C 1.54240 * 112.41423 * 182.59528 * 15 13 4 17 17 C 1.50472 * 108.51324 * 280.00852 * 16 15 13 18 18 C 1.54063 * 112.49735 * 94.15318 * 17 16 15 19 19 C 1.54067 * 112.82045 * 318.27786 * 18 17 16 20 20 C 1.50467 * 112.41771 * 318.33897 * 19 18 17 21 21 H 1.09000 * 109.62941 * 334.38138 * 20 19 18 22 22 N 1.46910 * 109.62693 * 213.80648 * 20 19 18 23 23 H 1.09007 * 109.47409 * 45.82159 * 3 2 1 24 24 H 1.08999 * 109.47602 * 285.81961 * 3 2 1 25 25 H 0.97008 * 119.99447 * 179.97438 * 8 7 5 26 26 H 1.09003 * 108.89347 * 61.83960 * 15 13 4 27 27 H 1.09006 * 108.88895 * 303.34977 * 15 13 4 28 28 H 1.08998 * 109.62786 * 160.29578 * 16 15 13 29 29 H 1.09006 * 109.78612 * 39.80888 * 16 15 13 30 30 H 1.08992 * 108.87909 * 333.36788 * 17 16 15 31 31 H 1.09001 * 108.87041 * 214.92460 * 17 16 15 32 32 H 1.08997 * 108.81159 * 197.41955 * 18 17 16 33 33 H 1.09001 * 108.81656 * 79.14228 * 18 17 16 34 34 H 1.09005 * 108.87429 * 79.06170 * 19 18 17 35 35 H 1.08996 * 108.87787 * 197.60359 * 19 18 17 36 36 H 1.00898 * 110.99798 * 59.99874 * 22 20 19 37 37 H 1.00900 * 110.99783 * 183.95442 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.3400 -0.3383 5 6 3.4636 1.6300 -1.6251 6 1 3.2436 2.6009 -2.0439 7 6 4.1192 0.6760 -2.3912 8 7 4.0698 0.7396 -3.7049 9 14 5.0714 -0.6980 -1.5577 10 1 4.2084 -1.9013 -1.4460 11 1 6.2753 -1.0254 -2.3633 12 1 5.4877 -0.2598 -0.2013 13 6 3.1899 2.3692 0.7000 14 1 2.8780 1.9393 1.6519 15 6 4.5750 2.8026 0.8099 16 6 4.7781 3.8445 1.9289 17 6 4.3484 5.1907 1.4120 18 6 2.8851 5.5183 1.7654 19 6 1.9435 4.3115 1.5901 20 6 2.2405 3.5288 0.3398 21 1 2.7159 4.1787 -0.3948 22 7 0.9913 2.9862 -0.2111 23 1 2.9717 -0.7154 -0.7370 24 1 2.9715 -0.2793 0.9887 25 1 4.5283 0.0731 -4.2403 26 1 4.8845 3.2394 -0.1396 27 1 5.2009 1.9347 1.0178 28 1 5.8306 3.8791 2.2103 29 1 4.1756 3.5761 2.7968 30 1 4.4611 5.2046 0.3280 31 1 4.9947 5.9561 1.8416 32 1 2.5412 6.3286 1.1227 33 1 2.8400 5.8516 2.8022 34 1 2.0502 3.6528 2.4521 35 1 0.9151 4.6700 1.5460 36 1 0.3455 3.7268 -0.4403 37 1 1.1734 2.4037 -1.0145 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040988858.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:58 Heat of formation + Delta-G solvation = 29.016394 kcal Electronic energy + Delta-G solvation = -18124.206804 eV Core-core repulsion = 15515.273932 eV Total energy + Delta-G solvation = -2608.932872 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55272 -37.70663 -36.27841 -34.71822 -33.82067 -32.22393 -29.94445 -28.64252 -26.10072 -24.44497 -23.56625 -21.04645 -20.18254 -19.44726 -17.80071 -17.01609 -16.73082 -16.38021 -16.31077 -15.30556 -15.14723 -14.66650 -14.54186 -14.39559 -14.02323 -13.78207 -13.70442 -13.26962 -12.99852 -12.92679 -12.63309 -12.53575 -12.05160 -11.90097 -11.59346 -11.55589 -11.51289 -11.24588 -11.14120 -11.02072 -10.54779 -9.39524 -8.82250 -8.15050 -5.57868 1.40704 1.54597 1.64447 2.01923 2.17698 2.49071 3.14325 3.34908 3.54891 3.66490 4.02650 4.13450 4.28426 4.38405 4.45149 4.47527 4.54512 4.61223 4.66284 4.74658 4.96798 5.03702 5.12108 5.19244 5.29248 5.38781 5.41966 5.49435 5.60370 5.61642 5.72376 5.99235 6.24848 6.51217 6.72122 6.92509 7.00394 7.61095 8.01805 9.03432 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.010962 C = 0.008940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.264329 B = 2553.766342 C = 3131.211898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.217 3.783 3 C 0.213 3.787 4 N -0.590 5.590 5 C -0.251 4.251 6 H 0.040 0.960 7 C -0.013 4.013 8 N -0.943 5.943 9 Si 0.925 3.075 10 H -0.268 1.268 11 H -0.315 1.315 12 H -0.233 1.233 13 C 0.185 3.815 14 H 0.071 0.929 15 C -0.120 4.120 16 C -0.106 4.106 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.103 4.103 20 C 0.092 3.908 21 H 0.009 0.991 22 N -0.842 5.842 23 H 0.086 0.914 24 H 0.125 0.875 25 H 0.262 0.738 26 H 0.043 0.957 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.327 0.673 37 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 5.289 13.365 14.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.103 4.103 3 C 0.084 3.916 4 N -0.311 5.311 5 C -0.381 4.381 6 H 0.057 0.943 7 C -0.211 4.211 8 N -0.585 5.585 9 Si 0.752 3.248 10 H -0.195 1.195 11 H -0.244 1.244 12 H -0.156 1.156 13 C 0.080 3.920 14 H 0.089 0.911 15 C -0.159 4.159 16 C -0.144 4.144 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.141 4.141 20 C -0.021 4.021 21 H 0.027 0.973 22 N -0.373 5.373 23 H 0.103 0.897 24 H 0.142 0.858 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.070 4.883 13.932 14.801 hybrid contribution 1.008 -0.087 -1.715 1.991 sum 2.078 4.795 12.217 13.288 Atomic orbital electron populations 1.80927 1.14775 1.10279 1.11007 1.31251 0.96791 0.91159 0.91056 1.19361 0.79524 0.89660 1.03101 1.44269 1.71859 1.08594 1.06397 1.18315 1.31920 1.00269 0.87572 0.94264 1.26106 0.98559 1.01252 0.95171 1.70029 1.44432 1.37967 1.06118 0.86129 0.78481 0.79770 0.80417 1.19453 1.24370 1.15614 1.19604 0.93749 0.88219 0.90441 0.91075 1.20813 0.97029 0.99277 0.98808 1.21264 1.01646 0.93945 0.97577 1.21335 0.96217 0.97732 1.00293 1.21856 0.94146 0.96726 1.01923 1.21289 0.99071 0.96916 0.96868 1.21298 0.90266 0.95056 0.95485 0.97288 1.58904 1.13689 1.25017 1.39682 0.89681 0.85787 0.92861 0.93776 0.92509 0.90911 0.90619 0.94208 0.90959 0.92953 0.90450 0.91507 0.92433 0.86197 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -20.95 18.54 20.01 0.37 -20.58 16 2 C 0.22 8.61 13.92 89.44 1.25 9.86 16 3 C 0.21 7.77 4.67 84.57 0.40 8.17 16 4 N -0.59 -23.60 1.04 -699.16 -0.73 -24.33 16 5 C -0.25 -12.44 7.47 84.03 0.63 -11.81 16 6 H 0.04 2.24 7.64 -2.91 -0.02 2.22 16 7 C -0.01 -0.70 5.23 84.86 0.44 -0.25 16 8 N -0.94 -54.94 13.97 21.65 0.30 -54.64 16 9 Si 0.93 39.61 25.15 68.60 1.73 41.33 16 10 H -0.27 -10.78 6.67 99.48 0.66 -10.12 16 11 H -0.31 -14.36 7.11 99.48 0.71 -13.66 16 12 H -0.23 -8.88 7.11 99.48 0.71 -8.18 16 13 C 0.18 6.23 1.93 43.10 0.08 6.31 16 14 H 0.07 2.19 7.17 -2.38 -0.02 2.18 16 15 C -0.12 -3.79 4.44 28.74 0.13 -3.66 16 16 C -0.11 -2.48 5.60 30.20 0.17 -2.31 16 17 C -0.12 -2.73 5.31 30.14 0.16 -2.57 16 18 C -0.11 -2.38 5.85 31.31 0.18 -2.20 16 19 C -0.10 -2.71 5.04 30.14 0.15 -2.56 16 20 C 0.09 3.07 2.17 44.48 0.10 3.16 16 21 H 0.01 0.35 6.82 -2.39 -0.02 0.33 16 22 N -0.84 -31.06 8.15 -170.47 -1.39 -32.45 16 23 H 0.09 3.34 3.75 -2.38 -0.01 3.33 16 24 H 0.12 3.48 8.05 -2.39 -0.02 3.46 16 25 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 26 H 0.04 1.66 6.84 -2.39 -0.02 1.64 16 27 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 28 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.08 1.57 7.00 -2.38 -0.02 1.56 16 30 H 0.04 1.11 6.63 -2.39 -0.02 1.10 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 1.68 6.64 -2.38 -0.02 1.66 16 35 H 0.06 1.52 7.80 -2.39 -0.02 1.50 16 36 H 0.33 11.08 8.87 -89.70 -0.80 10.29 16 37 H 0.34 14.91 6.03 -89.69 -0.54 14.37 16 Total: -1.00 -59.52 281.61 3.67 -55.85 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: -0.29 Total: 32.67 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 3.68 Total: 2.15 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -1.45 Total: -132.00 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.73 Total: 41.33 kcal Total: -59.52 3.67 -55.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040988858.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.867 kcal (2) G-P(sol) polarization free energy of solvation -59.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds