Wall clock time and date at job start Mon Mar 30 2020 04:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46510 * 109.46922 * 145.84473 * 3 2 1 5 5 C 1.36931 * 119.99715 * 265.54704 * 4 3 2 6 6 H 1.08002 * 119.99577 * 141.27852 * 5 4 3 7 7 C 1.38808 * 120.00462 * 321.28021 * 5 4 3 8 8 N 1.31618 * 120.00148 * 165.84479 * 7 5 4 9 9 Si 1.86806 * 119.99850 * 345.84650 * 7 5 4 10 10 H 1.48505 * 109.47073 * 95.59398 * 9 7 5 11 11 H 1.48498 * 109.47183 * 215.59436 * 9 7 5 12 12 H 1.48501 * 109.47144 * 335.59665 * 9 7 5 13 13 C 1.46500 * 119.99734 * 85.54603 * 4 3 2 14 14 H 1.08997 * 108.85799 * 9.25281 * 13 4 3 15 15 C 1.50474 * 108.87491 * 127.80824 * 13 4 3 16 16 C 1.54235 * 108.51764 * 214.93190 * 15 13 4 17 17 C 1.45541 * 112.40734 * 280.00185 * 16 15 13 18 18 C 1.54243 * 112.40290 * 61.93609 * 17 16 15 19 19 C 1.50467 * 108.52913 * 280.02019 * 18 17 16 20 20 C 1.54009 * 112.54792 * 94.06755 * 19 18 17 21 21 H 1.08997 * 108.71222 * 79.25976 * 20 19 18 22 22 N 1.46898 * 108.87244 * 197.51556 * 20 19 18 23 23 H 1.08999 * 109.46857 * 265.83792 * 3 2 1 24 24 H 1.08992 * 109.47825 * 25.84429 * 3 2 1 25 25 H 0.97007 * 119.99937 * 179.97438 * 8 7 5 26 26 H 1.09007 * 109.63330 * 334.64094 * 15 13 4 27 27 H 1.09003 * 109.62681 * 95.21921 * 15 13 4 28 28 H 1.08999 * 108.89059 * 40.75417 * 16 15 13 29 29 H 1.08998 * 108.89420 * 159.34526 * 16 15 13 30 30 H 1.09005 * 108.89503 * 182.68684 * 17 16 15 31 31 H 1.09000 * 108.90056 * 301.18169 * 17 16 15 32 32 H 1.09002 * 109.62863 * 39.73785 * 18 17 16 33 33 H 1.09001 * 109.62514 * 160.30935 * 18 17 16 34 34 H 1.09003 * 108.88182 * 214.92330 * 19 18 17 35 35 H 1.09003 * 108.87948 * 333.37123 * 19 18 17 36 36 H 1.00902 * 111.00472 * 293.75526 * 22 20 19 37 37 H 1.00907 * 110.99798 * 57.70504 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0957 1.1440 -0.7755 5 6 3.4108 0.9890 -2.0991 6 1 3.1686 1.7683 -2.8065 7 6 4.0414 -0.1695 -2.5315 8 7 4.0957 -0.4488 -3.8166 9 14 4.8128 -1.3323 -1.2895 10 1 3.8514 -2.4158 -0.9623 11 1 6.0475 -1.9232 -1.8652 12 1 5.1525 -0.5822 -0.0537 13 6 3.2464 2.4528 -0.1349 14 1 3.1076 2.3371 0.9400 15 6 4.6377 2.9642 -0.3937 16 6 5.1094 3.7500 0.8468 17 6 4.5707 5.1015 0.8853 18 6 3.0306 5.1183 0.9678 19 6 2.4754 4.8854 -0.4112 20 6 2.1611 3.4016 -0.6784 21 1 1.2101 3.1551 -0.2063 22 7 2.0346 3.1962 -2.1275 23 1 2.9712 0.0754 1.0250 24 1 2.9718 -0.9239 -0.4479 25 1 4.5367 -1.2582 -4.1188 26 1 5.3093 2.1244 -0.5724 27 1 4.6302 3.6220 -1.2629 28 1 4.7919 3.2178 1.7435 29 1 6.1979 3.8055 0.8366 30 1 4.9764 5.6186 1.7550 31 1 4.8818 5.6314 -0.0150 32 1 2.6911 4.3282 1.6375 33 1 2.6944 6.0864 1.3391 34 1 1.5603 5.4666 -0.5258 35 1 3.2030 5.2282 -1.1469 36 1 1.2303 3.6836 -2.4930 37 1 2.8766 3.4772 -2.6074 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040988860.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:01 Heat of formation + Delta-G solvation = 42.956386 kcal Electronic energy + Delta-G solvation = -18130.103463 eV Core-core repulsion = 15521.775074 eV Total energy + Delta-G solvation = -2608.328389 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45892 -37.84437 -36.39257 -34.90997 -33.52904 -32.12691 -29.97085 -28.50015 -26.04684 -24.48897 -23.27645 -21.23799 -19.98865 -19.58664 -17.99803 -16.91839 -16.85566 -16.67559 -15.66132 -15.28982 -15.21536 -14.91198 -14.51322 -14.11372 -13.86409 -13.66812 -13.63061 -13.35736 -13.25203 -12.95343 -12.74168 -12.40806 -12.27916 -11.67441 -11.60025 -11.43898 -11.26636 -11.18660 -11.08919 -11.01073 -10.48980 -9.13498 -8.55093 -7.84288 -5.34263 1.42153 1.56157 1.63043 1.89984 2.00614 2.62321 3.26368 3.37640 3.56705 3.81816 4.00264 4.05798 4.22554 4.33455 4.41996 4.48015 4.53465 4.58556 4.63280 4.75376 4.93303 5.01401 5.12073 5.23351 5.32445 5.38140 5.44429 5.49473 5.57100 5.70798 5.80890 6.18523 6.58270 6.74592 6.79889 6.89357 7.20632 7.85508 8.22112 9.29676 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022741 B = 0.010602 C = 0.009371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.953181 B = 2640.475543 C = 2987.369383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.219 3.781 3 C 0.205 3.795 4 N -0.582 5.582 5 C -0.212 4.212 6 H 0.101 0.899 7 C -0.040 4.040 8 N -0.963 5.963 9 Si 0.914 3.086 10 H -0.286 1.286 11 H -0.324 1.324 12 H -0.227 1.227 13 C 0.184 3.816 14 H 0.075 0.925 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.111 4.111 18 C -0.112 4.112 19 C -0.139 4.139 20 C 0.088 3.912 21 H 0.042 0.958 22 N -0.826 5.826 23 H 0.132 0.868 24 H 0.077 0.923 25 H 0.252 0.748 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.322 0.678 37 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 11.029 12.207 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.100 4.100 3 C 0.075 3.925 4 N -0.302 5.302 5 C -0.342 4.342 6 H 0.118 0.882 7 C -0.233 4.233 8 N -0.610 5.610 9 Si 0.744 3.256 10 H -0.215 1.215 11 H -0.254 1.254 12 H -0.149 1.149 13 C 0.079 3.921 14 H 0.093 0.907 15 C -0.147 4.147 16 C -0.152 4.152 17 C -0.149 4.149 18 C -0.150 4.150 19 C -0.179 4.179 20 C -0.026 4.026 21 H 0.060 0.940 22 N -0.356 5.356 23 H 0.149 0.851 24 H 0.094 0.906 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.445 10.180 12.288 16.022 hybrid contribution 0.604 -0.118 -0.468 0.773 sum 2.049 10.063 11.820 15.658 Atomic orbital electron populations 1.80953 1.15134 1.11046 1.11775 1.31791 0.97139 0.90787 0.90290 1.19582 0.78991 0.94010 0.99917 1.44355 1.71984 1.05245 1.08611 1.19546 1.26805 1.03928 0.83920 0.88183 1.26218 0.99975 1.00719 0.96372 1.69934 1.48493 1.26917 1.15698 0.86302 0.77273 0.79832 0.82165 1.21458 1.25371 1.14917 1.20573 0.93155 0.83329 0.95091 0.90692 1.21541 0.96276 0.99165 0.97676 1.20477 1.00627 0.96408 0.97657 1.20458 0.95209 0.97081 1.02133 1.21282 0.95632 1.01902 0.96161 1.22142 1.00621 0.96456 0.98711 1.22374 0.98111 0.93053 0.89074 0.94005 1.59236 1.07544 1.65233 1.03594 0.85091 0.90595 0.93880 0.92741 0.93111 0.91560 0.91915 0.91028 0.92704 0.91730 0.91025 0.92804 0.92313 0.86590 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.41 18.54 20.00 0.37 -22.03 16 2 C 0.22 8.92 15.76 89.44 1.41 10.33 16 3 C 0.20 7.59 4.57 84.57 0.39 7.98 16 4 N -0.58 -23.18 1.81 -691.08 -1.25 -24.43 16 5 C -0.21 -10.42 8.08 84.03 0.68 -9.74 16 6 H 0.10 5.32 4.90 -2.91 -0.01 5.30 16 7 C -0.04 -2.14 5.40 84.86 0.46 -1.68 16 8 N -0.96 -58.20 13.97 21.65 0.30 -57.90 16 9 Si 0.91 41.21 24.63 68.60 1.69 42.90 16 10 H -0.29 -12.70 6.81 99.48 0.68 -12.02 16 11 H -0.32 -15.67 7.11 99.48 0.71 -14.97 16 12 H -0.23 -8.71 6.90 99.48 0.69 -8.02 16 13 C 0.18 5.83 2.04 44.53 0.09 5.92 16 14 H 0.08 2.07 6.26 -2.39 -0.01 2.06 16 15 C -0.11 -3.22 4.55 30.20 0.14 -3.08 16 16 C -0.11 -2.49 5.26 28.73 0.15 -2.33 16 17 C -0.11 -2.09 5.26 28.74 0.15 -1.94 16 18 C -0.11 -2.18 5.61 30.20 0.17 -2.01 16 19 C -0.14 -3.28 4.90 30.12 0.15 -3.13 16 20 C 0.09 2.69 3.03 45.62 0.14 2.83 16 21 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 22 N -0.83 -29.15 6.28 -165.78 -1.04 -30.19 16 23 H 0.13 3.61 7.93 -2.39 -0.02 3.60 16 24 H 0.08 3.12 3.04 -2.39 -0.01 3.11 16 25 H 0.25 14.84 8.31 -92.70 -0.77 14.07 16 26 H 0.05 1.92 7.70 -2.38 -0.02 1.90 16 27 H 0.05 1.59 6.33 -2.39 -0.02 1.57 16 28 H 0.07 1.34 7.47 -2.39 -0.02 1.32 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.05 1.07 7.47 -2.39 -0.02 1.05 16 32 H 0.06 1.29 6.98 -2.39 -0.02 1.28 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.41 6.46 -2.39 -0.02 1.40 16 36 H 0.32 10.39 9.08 -89.69 -0.81 9.58 16 37 H 0.34 12.07 7.05 -89.69 -0.63 11.44 16 Total: -1.00 -63.31 280.21 3.59 -59.72 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.40 Total: 28.79 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 3.92 Total: 3.14 kcal Atomic # 7 Polarization: -132.93 SS G_CDS: -1.62 Total: -134.55 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 1.69 Total: 42.90 kcal Total: -63.31 3.59 -59.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040988860.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.673 kcal (2) G-P(sol) polarization free energy of solvation -63.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds