Wall clock time and date at job start Mon Mar 30 2020 03:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46985 * 2 1 4 4 C 1.46498 * 119.99940 * 85.12446 * 3 2 1 5 5 C 1.50701 * 109.47039 * 90.00028 * 4 3 2 6 6 H 1.07998 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00042 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00034 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47225 * 60.00420 * 9 7 5 11 11 H 1.48503 * 109.47415 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47306 * 300.00153 * 9 7 5 13 13 C 1.34773 * 120.00327 * 265.12418 * 3 2 1 14 14 O 1.21284 * 120.00582 * 185.20526 * 13 3 2 15 15 C 1.50701 * 119.99928 * 5.21021 * 13 3 2 16 16 C 1.54890 * 110.75969 * 154.57512 * 15 13 3 17 17 C 1.54260 * 104.19764 * 156.25878 * 16 15 13 18 18 H 1.08994 * 117.41375 * 116.37276 * 17 16 15 19 19 C 1.53004 * 118.19782 * 270.99652 * 17 16 15 20 20 C 1.53880 * 106.59938 * 336.38661 * 17 16 15 21 21 H 1.09001 * 121.32539 * 138.62943 * 20 17 16 22 22 C 1.54462 * 106.68360 * 0.16121 * 20 17 16 23 23 H 1.08994 * 109.46818 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46994 * 299.99766 * 1 2 3 25 25 H 1.09002 * 109.46847 * 60.00001 * 1 2 3 26 26 H 1.08994 * 109.46994 * 120.00272 * 2 1 3 27 27 H 1.09003 * 109.46837 * 240.00518 * 2 1 3 28 28 H 1.08998 * 109.47468 * 209.99777 * 4 3 2 29 29 H 1.09000 * 109.47156 * 330.00009 * 4 3 2 30 30 H 0.96996 * 119.99829 * 179.97438 * 8 7 5 31 31 H 1.08998 * 110.67331 * 31.33764 * 15 13 3 32 32 H 1.09001 * 110.48458 * 274.93790 * 16 15 13 33 33 H 1.08997 * 110.48567 * 37.57498 * 16 15 13 34 34 H 1.08997 * 117.46156 * 201.21740 * 19 17 16 35 35 H 1.09005 * 117.46234 * 346.02053 * 19 17 16 36 36 H 1.09001 * 110.40889 * 264.75567 * 22 20 17 37 37 H 1.08997 * 110.66533 * 142.04702 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1608 2.1077 1.2641 5 6 3.5444 1.8850 1.8183 6 1 4.2474 1.2647 1.2823 7 6 3.9131 2.4740 3.0092 8 7 3.0572 3.2299 3.6618 9 14 5.6278 2.1974 3.6965 10 1 6.6363 2.6913 2.7247 11 1 5.7724 2.9339 4.9779 12 1 5.8380 0.7465 3.9337 13 6 2.3365 1.9835 -1.1629 14 8 2.8292 3.0918 -1.1570 15 6 2.0800 1.2800 -2.4707 16 6 1.9039 2.3039 -3.6196 17 6 2.2630 1.5098 -4.8924 18 1 1.4750 1.3622 -5.6308 19 6 3.7250 1.4891 -5.3432 20 6 3.1683 0.3485 -4.4453 21 1 3.0529 -0.6524 -4.8611 22 6 3.3259 0.4734 -2.9138 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 2.0061 3.1726 1.0907 29 1 1.4209 1.7445 1.9774 30 1 3.3165 3.6439 4.4997 31 1 1.2072 0.6316 -2.3941 32 1 0.8720 2.6520 -3.6655 33 1 2.5856 3.1444 -3.4892 34 1 3.9257 1.2480 -6.3871 35 1 4.4009 2.2145 -4.8905 36 1 4.2387 1.0163 -2.6687 37 1 3.3291 -0.5110 -2.4459 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156793599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:02 Heat of formation + Delta-G solvation = -20.086378 kcal Electronic energy + Delta-G solvation = -17346.845054 eV Core-core repulsion = 14703.490174 eV Total energy + Delta-G solvation = -2643.354879 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96830 -37.98336 -35.23850 -32.84072 -31.50220 -30.01845 -28.16333 -27.14414 -24.02695 -22.98215 -21.96697 -20.43729 -19.61318 -18.06509 -16.65225 -16.36720 -16.07986 -15.31641 -14.33560 -14.21952 -13.57920 -13.30852 -13.10158 -12.97622 -12.78170 -12.27188 -12.01534 -11.68297 -11.31059 -11.21119 -11.16571 -10.90986 -10.86989 -10.82287 -10.67298 -10.49644 -10.10620 -9.93430 -9.62385 -9.59839 -8.75078 -8.40009 -7.60747 -6.00972 -4.05248 3.31606 3.34010 3.38016 3.41838 3.75578 3.97280 4.46590 4.58766 4.74464 4.87985 5.19666 5.25061 5.30523 5.34891 5.39687 5.51759 5.60324 5.62051 5.69868 5.81163 5.85511 5.88158 5.98729 6.13216 6.20370 6.24532 6.28399 6.33500 6.51436 6.55752 7.12432 7.47437 7.60723 7.95750 8.27794 8.49583 8.94365 9.16442 9.59595 11.07118 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028207 B = 0.006792 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.408099 B = 4121.569372 C = 4544.639128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.597 5.597 4 C 0.247 3.753 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.512 3.488 14 O -0.540 6.540 15 C -0.114 4.114 16 C -0.081 4.081 17 C -0.161 4.161 18 H 0.106 0.894 19 C -0.157 4.157 20 C -0.167 4.167 21 H 0.110 0.890 22 C -0.080 4.080 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.031 0.969 30 H 0.263 0.737 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.841 -8.085 -13.884 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.127 3.873 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.298 3.702 14 O -0.418 6.418 15 C -0.136 4.136 16 C -0.119 4.119 17 C -0.179 4.179 18 H 0.124 0.876 19 C -0.194 4.194 20 C -0.185 4.185 21 H 0.128 0.872 22 C -0.118 4.118 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.617 -7.379 -13.657 15.939 hybrid contribution 0.818 -0.276 0.500 0.998 sum -2.798 -7.655 -13.157 15.477 Atomic orbital electron populations 1.22221 0.96884 1.01317 1.02346 1.21426 0.93545 0.84343 1.02518 1.48252 1.63243 1.13239 1.08128 1.19239 0.96726 0.92852 0.78453 1.21402 0.98574 1.30432 1.05828 0.92568 1.24935 0.97463 0.94975 0.96769 1.69925 1.35019 1.32212 1.16387 0.86572 0.84614 0.78158 0.78153 1.20210 1.21187 1.20281 1.20191 0.78746 0.86346 0.84925 1.90652 1.43371 1.20592 1.87150 1.22521 0.99557 0.97775 0.93737 1.21852 1.02166 0.97576 0.90315 1.23241 0.93569 1.01239 0.99888 0.87551 1.23448 0.96150 1.00735 0.99019 1.23632 1.06410 0.94034 0.94399 0.87232 1.21873 0.97544 0.99936 0.92461 0.92281 0.92014 0.93034 0.90225 0.91512 0.94139 0.95069 0.92723 0.88990 0.91316 0.89636 0.88686 0.88690 0.90669 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.11 37.16 0.38 -1.96 16 2 C 0.11 1.73 5.72 -4.04 -0.02 1.71 16 3 N -0.60 -12.83 2.46 -175.06 -0.43 -13.26 16 4 C 0.25 6.55 5.14 -5.19 -0.03 6.52 16 5 C -0.52 -15.09 9.39 -34.44 -0.32 -15.41 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.51 10.84 6.83 -10.99 -0.07 10.77 16 14 O -0.54 -13.92 15.47 5.55 0.09 -13.83 16 15 C -0.11 -1.78 2.26 -89.77 -0.20 -1.98 16 16 C -0.08 -1.18 5.93 -25.07 -0.15 -1.33 16 17 C -0.16 -1.89 6.85 -89.50 -0.61 -2.51 16 18 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 19 C -0.16 -1.76 10.22 -25.42 -0.26 -2.02 16 20 C -0.17 -1.94 7.03 -88.08 -0.62 -2.56 16 21 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 22 C -0.08 -1.13 5.92 -24.96 -0.15 -1.28 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 25 H 0.05 0.68 7.43 -51.93 -0.39 0.29 16 26 H 0.08 1.36 8.11 -51.93 -0.42 0.94 16 27 H 0.07 0.92 5.57 -51.93 -0.29 0.63 16 28 H 0.04 1.21 7.50 -51.93 -0.39 0.83 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.09 1.25 6.13 -51.93 -0.32 0.93 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 1.45 7.24 -51.93 -0.38 1.07 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.22 8.04 -51.93 -0.42 0.81 16 37 H 0.07 0.94 7.32 -51.93 -0.38 0.56 16 LS Contribution 301.45 15.07 4.54 4.54 Total: -1.00 -32.55 301.45 -8.15 -40.69 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.90 Total: -0.68 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.16 Total: -8.39 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.31 Total: -39.50 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -32.55 -8.15 -40.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156793599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.607 kcal (2) G-P(sol) polarization free energy of solvation -32.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds