Wall clock time and date at job start Mon Mar 30 2020 03:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46985 * 2 1 4 4 C 1.46498 * 119.99940 * 85.12446 * 3 2 1 5 5 C 1.50701 * 109.47039 * 90.00028 * 4 3 2 6 6 H 1.07998 * 120.00134 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00042 * 179.97438 * 5 4 3 8 8 N 1.31521 * 119.99959 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00034 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47225 * 60.00420 * 9 7 5 11 11 H 1.48503 * 109.47415 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47306 * 300.00153 * 9 7 5 13 13 C 1.34773 * 120.00327 * 265.12418 * 3 2 1 14 14 O 1.21284 * 120.00582 * 185.20526 * 13 3 2 15 15 C 1.50701 * 119.99928 * 5.21021 * 13 3 2 16 16 C 1.54890 * 110.75969 * 154.57512 * 15 13 3 17 17 C 1.54260 * 104.19764 * 156.25878 * 16 15 13 18 18 H 1.08994 * 117.41375 * 116.37276 * 17 16 15 19 19 C 1.53004 * 118.19782 * 270.99652 * 17 16 15 20 20 C 1.53880 * 106.59938 * 336.38661 * 17 16 15 21 21 H 1.09001 * 121.32539 * 138.62943 * 20 17 16 22 22 C 1.54462 * 106.68360 * 0.16121 * 20 17 16 23 23 H 1.08994 * 109.46818 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46994 * 299.99766 * 1 2 3 25 25 H 1.09002 * 109.46847 * 60.00001 * 1 2 3 26 26 H 1.08994 * 109.46994 * 120.00272 * 2 1 3 27 27 H 1.09003 * 109.46837 * 240.00518 * 2 1 3 28 28 H 1.08998 * 109.47468 * 209.99777 * 4 3 2 29 29 H 1.09000 * 109.47156 * 330.00009 * 4 3 2 30 30 H 0.96996 * 119.99829 * 179.97438 * 8 7 5 31 31 H 1.08998 * 110.67331 * 31.33764 * 15 13 3 32 32 H 1.09001 * 110.48458 * 274.93790 * 16 15 13 33 33 H 1.08997 * 110.48567 * 37.57498 * 16 15 13 34 34 H 1.08997 * 117.46156 * 201.21740 * 19 17 16 35 35 H 1.09005 * 117.46234 * 346.02053 * 19 17 16 36 36 H 1.09001 * 110.40889 * 264.75567 * 22 20 17 37 37 H 1.08997 * 110.66533 * 142.04702 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1608 2.1077 1.2641 5 6 3.5444 1.8850 1.8183 6 1 4.2474 1.2647 1.2823 7 6 3.9131 2.4740 3.0092 8 7 3.0572 3.2299 3.6618 9 14 5.6278 2.1974 3.6965 10 1 6.6363 2.6913 2.7247 11 1 5.7724 2.9339 4.9779 12 1 5.8380 0.7465 3.9337 13 6 2.3365 1.9835 -1.1629 14 8 2.8292 3.0918 -1.1570 15 6 2.0800 1.2800 -2.4707 16 6 1.9039 2.3039 -3.6196 17 6 2.2630 1.5098 -4.8924 18 1 1.4750 1.3622 -5.6308 19 6 3.7250 1.4891 -5.3432 20 6 3.1683 0.3485 -4.4453 21 1 3.0529 -0.6524 -4.8611 22 6 3.3259 0.4734 -2.9138 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 2.0061 3.1726 1.0907 29 1 1.4209 1.7445 1.9774 30 1 3.3165 3.6439 4.4997 31 1 1.2072 0.6316 -2.3941 32 1 0.8720 2.6520 -3.6655 33 1 2.5856 3.1444 -3.4892 34 1 3.9257 1.2480 -6.3871 35 1 4.4009 2.2145 -4.8905 36 1 4.2387 1.0163 -2.6687 37 1 3.3291 -0.5110 -2.4459 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156793599.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:02 Heat of formation + Delta-G solvation = -39.770014 kcal Electronic energy + Delta-G solvation = -17347.698600 eV Core-core repulsion = 14703.490174 eV Total energy + Delta-G solvation = -2644.208426 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.35728 -39.33659 -36.97521 -34.95187 -32.80624 -31.53582 -29.32516 -29.04500 -25.74463 -24.50411 -23.34856 -21.60070 -20.58669 -19.66137 -18.60946 -18.08182 -17.28060 -16.97185 -16.22354 -15.83488 -15.05415 -14.67745 -14.39959 -14.29478 -14.05659 -13.93683 -13.51194 -13.29819 -13.08308 -12.73103 -12.58892 -12.39383 -12.27933 -12.14144 -12.06751 -11.95615 -11.87862 -11.74393 -10.87067 -10.67510 -10.66172 -10.39636 -9.44736 -8.23873 -6.38778 1.33921 1.38586 1.45920 1.76761 2.28343 2.43807 2.73958 3.05081 3.43561 3.73811 3.83526 4.01124 4.16712 4.20562 4.29342 4.42779 4.47408 4.50191 4.59017 4.65536 4.74307 4.88091 4.95899 4.97992 5.02965 5.04271 5.13737 5.18627 5.21752 5.37047 5.39844 5.45992 5.57222 5.86162 6.05362 6.68355 6.80848 7.26779 7.48953 8.83055 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028207 B = 0.006792 C = 0.006160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.408099 B = 4121.569372 C = 4544.639128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.262 3.738 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.259 1.259 13 C 0.501 3.499 14 O -0.600 6.600 15 C -0.103 4.103 16 C -0.087 4.087 17 C -0.156 4.156 18 H 0.136 0.864 19 C -0.160 4.160 20 C -0.157 4.157 21 H 0.143 0.857 22 C -0.083 4.083 23 H 0.097 0.903 24 H 0.037 0.963 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.102 0.898 28 H -0.008 1.008 29 H 0.023 0.977 30 H 0.267 0.733 31 H 0.124 0.876 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 -10.898 -15.668 19.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.024 4.024 3 N -0.333 5.333 4 C 0.140 3.860 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.205 1.205 11 H -0.201 1.201 12 H -0.183 1.183 13 C 0.290 3.710 14 O -0.482 6.482 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.173 4.173 18 H 0.154 0.846 19 C -0.197 4.197 20 C -0.175 4.175 21 H 0.160 0.840 22 C -0.121 4.121 23 H 0.116 0.884 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.120 0.880 28 H 0.010 0.990 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.142 0.858 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.142 0.858 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.758 -10.243 -15.453 18.917 hybrid contribution 0.833 0.648 1.075 1.507 sum -2.925 -9.595 -14.378 17.531 Atomic orbital electron populations 1.22158 0.94525 1.03594 1.01674 1.21774 0.95469 0.81341 1.03784 1.48309 1.63303 1.15090 1.06583 1.18686 0.95777 0.90807 0.80703 1.21669 0.99416 1.30718 1.06304 0.93091 1.25875 1.01844 0.94436 0.97055 1.70047 1.37146 1.32846 1.16820 0.85478 0.78897 0.79096 0.77405 1.20525 1.20113 1.18301 1.21304 0.77216 0.85853 0.86594 1.90615 1.45980 1.23440 1.88159 1.22555 1.01526 0.98111 0.90199 1.21856 1.01966 0.96765 0.91862 1.23225 0.94572 1.00490 0.99048 0.84615 1.23547 0.95478 1.00242 1.00419 1.23666 1.06015 0.95512 0.92284 0.83972 1.21901 0.95125 0.99986 0.95086 0.88426 0.94380 0.92070 0.91165 0.88012 0.98982 0.95885 0.92376 0.85809 0.90315 0.93258 0.85776 0.90960 0.94009 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.11 71.98 0.73 -3.38 16 2 C 0.10 3.09 5.72 86.38 0.49 3.58 16 3 N -0.60 -26.53 2.46 -826.16 -2.03 -28.56 16 4 C 0.26 14.67 5.14 85.63 0.44 15.11 16 5 C -0.54 -32.38 9.39 25.60 0.24 -32.14 16 6 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 9 Si 0.97 46.04 29.54 68.60 2.03 48.06 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 13 C 0.50 21.92 6.83 87.66 0.60 22.51 16 14 O -0.60 -33.05 15.47 -3.04 -0.05 -33.10 16 15 C -0.10 -3.07 2.26 -10.25 -0.02 -3.09 16 16 C -0.09 -2.45 5.93 31.67 0.19 -2.27 16 17 C -0.16 -3.17 6.85 -10.07 -0.07 -3.24 16 18 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 19 C -0.16 -3.21 10.22 31.45 0.32 -2.89 16 20 C -0.16 -3.08 7.03 -9.15 -0.06 -3.14 16 21 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 22 C -0.08 -2.19 5.92 31.74 0.19 -2.00 16 23 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.06 1.44 7.43 -2.39 -0.02 1.42 16 26 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 27 H 0.10 2.47 5.57 -2.39 -0.01 2.46 16 28 H -0.01 -0.52 7.50 -2.39 -0.02 -0.53 16 29 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 30 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.12 2.92 6.13 -2.39 -0.01 2.90 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.05 1.75 7.24 -2.39 -0.02 1.74 16 34 H 0.12 1.79 8.14 -2.39 -0.02 1.78 16 35 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 36 H 0.04 1.37 8.04 -2.39 -0.02 1.35 16 37 H 0.09 2.07 7.32 -2.39 -0.02 2.06 16 Total: -1.00 -75.91 301.45 4.77 -71.14 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.04 Total: 9.80 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 3.50 Total: -10.07 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -1.74 Total: -85.84 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.05 Total: -33.10 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.91 4.77 -71.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156793599.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.368 kcal (2) G-P(sol) polarization free energy of solvation -75.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds