Wall clock time and date at job start Mon Mar 30 2020 03:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46865 * 2 1 4 4 C 1.50692 * 109.47033 * 120.00433 * 2 1 3 5 5 H 1.08005 * 119.99978 * 120.00373 * 4 2 1 6 6 C 1.37873 * 120.00100 * 299.99597 * 4 2 1 7 7 N 1.31511 * 120.00174 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00112 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47248 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47382 * 120.00436 * 8 6 4 11 11 H 1.48502 * 109.47484 * 240.00528 * 8 6 4 12 12 N 1.46497 * 109.46985 * 240.00759 * 2 1 3 13 13 C 1.46503 * 119.99993 * 299.99703 * 12 2 1 14 14 C 1.34780 * 120.00186 * 120.00049 * 12 2 1 15 15 O 1.21282 * 119.99829 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99968 * 179.97438 * 14 12 2 17 17 C 1.54326 * 110.25608 * 293.35486 * 16 14 12 18 18 C 1.54270 * 104.46612 * 278.97782 * 17 16 14 19 19 H 1.09002 * 117.41500 * 117.17000 * 18 17 16 20 20 C 1.52999 * 118.68445 * 272.98240 * 18 17 16 21 21 C 1.53000 * 60.37711 * 93.34448 * 20 18 17 22 22 H 1.09000 * 119.75259 * 111.12703 * 21 20 18 23 23 C 1.54271 * 118.19743 * 266.37669 * 21 20 18 24 24 H 1.09001 * 109.47210 * 299.99481 * 1 2 3 25 25 H 1.09004 * 109.47637 * 59.99818 * 1 2 3 26 26 H 1.09000 * 109.47063 * 179.97438 * 1 2 3 27 27 H 0.96996 * 120.00158 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46676 * 269.99976 * 13 12 2 29 29 H 1.08995 * 109.46975 * 30.00347 * 13 12 2 30 30 H 1.08999 * 109.47402 * 150.00760 * 13 12 2 31 31 H 1.09000 * 110.67548 * 56.76497 * 16 14 12 32 32 H 1.09002 * 109.67722 * 160.54949 * 17 16 14 33 33 H 1.09002 * 111.04220 * 38.08617 * 17 16 14 34 34 H 1.09010 * 117.45722 * 200.94272 * 20 18 17 35 35 H 1.08997 * 117.46363 * 345.74505 * 20 18 17 36 36 H 1.08993 * 110.48418 * 206.47064 * 23 21 20 37 37 H 1.08996 * 110.48262 * 328.98575 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.1484 -2.2859 3.6036 10 1 3.1472 -0.1861 4.8160 11 1 1.1678 -1.5870 4.8164 12 7 2.0183 -0.6904 -1.1962 13 6 1.6644 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0858 1.1259 -1.8915 16 6 3.2959 -0.7458 -3.3136 17 6 4.2889 -1.8594 -2.9192 18 6 5.6253 -1.1221 -2.6944 19 1 6.0529 -1.1526 -1.6922 20 6 6.5452 -0.8872 -3.8942 21 6 5.5406 0.1931 -3.4885 22 1 5.8975 1.1332 -3.0679 23 6 4.1615 0.2026 -4.1799 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7083 1.1606 3.4844 28 1 2.4158 -2.7375 -0.9720 29 1 0.6904 -2.3001 -0.9849 30 1 1.6238 -2.2850 -2.5004 31 1 2.4644 -1.1471 -3.8931 32 1 4.3809 -2.5753 -3.7361 33 1 3.9715 -2.3610 -2.0050 34 1 7.5988 -0.6960 -3.6898 35 1 6.3381 -1.4500 -4.8043 36 1 3.7418 1.2085 -4.1802 37 1 4.2430 -0.1761 -5.1987 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156801106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:22 Heat of formation + Delta-G solvation = -12.174912 kcal Electronic energy + Delta-G solvation = -17661.656679 eV Core-core repulsion = 15018.644866 eV Total energy + Delta-G solvation = -2643.011812 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.13926 -37.83947 -35.23134 -32.98134 -31.58490 -29.20551 -27.94537 -26.10839 -25.20165 -23.54428 -21.53919 -20.05866 -19.46710 -17.98843 -16.61972 -16.06397 -16.02403 -15.20376 -14.66524 -14.23765 -13.64916 -12.97970 -12.82175 -12.68190 -12.49189 -12.23782 -11.66764 -11.50942 -11.29865 -11.15066 -11.03000 -10.90799 -10.78065 -10.64657 -10.63727 -10.20697 -10.13985 -9.86134 -9.52713 -9.12080 -8.73580 -8.39786 -7.51158 -6.05094 -4.12717 3.26479 3.34301 3.37085 3.48023 3.78781 4.05390 4.41492 4.65242 4.85322 4.97513 5.23547 5.27366 5.40568 5.55239 5.58111 5.63356 5.70593 5.82715 5.86874 5.91573 6.04582 6.11641 6.24568 6.35394 6.39978 6.45968 6.53529 6.79209 6.85751 7.09549 7.49899 7.57281 7.75304 8.05452 8.23689 8.61100 8.87680 9.16062 9.54130 11.00250 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030505 B = 0.007306 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.653568 B = 3831.287892 C = 4141.159362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.522 4.522 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.594 5.594 13 C 0.087 3.913 14 C 0.514 3.486 15 O -0.550 6.550 16 C -0.115 4.115 17 C -0.086 4.086 18 C -0.168 4.168 19 H 0.108 0.892 20 C -0.156 4.156 21 C -0.154 4.154 22 H 0.109 0.891 23 C -0.075 4.075 24 H 0.093 0.907 25 H 0.011 0.989 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.678 -6.416 -11.771 14.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.325 5.325 13 C -0.057 4.057 14 C 0.300 3.700 15 O -0.429 6.429 16 C -0.137 4.137 17 C -0.124 4.124 18 C -0.186 4.186 19 H 0.126 0.874 20 C -0.193 4.193 21 C -0.172 4.172 22 H 0.127 0.873 23 C -0.113 4.113 24 H 0.111 0.889 25 H 0.030 0.970 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.712 -5.684 -11.488 13.656 hybrid contribution 0.267 -0.584 1.055 1.235 sum 4.979 -6.268 -10.434 13.151 Atomic orbital electron populations 1.22094 0.98378 0.99283 1.00785 1.18909 0.90747 0.94526 0.80116 0.91981 1.21364 1.31533 1.12848 0.90331 0.92311 1.24896 0.95021 0.94998 0.98955 1.69889 1.36546 1.22717 1.23568 0.86461 0.78602 0.79595 0.82855 1.19838 1.20953 1.20941 1.48179 1.49156 1.11524 1.23647 1.21605 1.01315 0.83491 0.99265 1.20168 0.78640 0.86910 0.84248 1.90615 1.58172 1.17243 1.76850 1.22385 0.98704 0.96772 0.95815 1.21889 0.92143 0.96198 1.02133 1.23189 0.98225 1.00476 0.96735 0.87437 1.23043 0.95949 1.02109 0.98217 1.23155 0.96654 0.93825 1.03542 0.87253 1.21768 0.92483 1.00370 0.96657 0.88861 0.97036 0.95153 0.92792 0.93320 0.91091 0.92953 0.88792 0.91156 0.89948 0.88843 0.89330 0.90043 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.68 2.64 -69.09 -0.18 6.49 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.29 8.37 -34.45 -0.29 -14.58 16 5 H 0.06 1.59 7.65 -52.48 -0.40 1.19 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.59 -12.80 2.75 -175.27 -0.48 -13.28 16 13 C 0.09 1.48 8.32 59.85 0.50 1.97 16 14 C 0.51 10.76 6.72 -10.98 -0.07 10.69 16 15 O -0.55 -13.74 14.85 5.56 0.08 -13.66 16 16 C -0.12 -1.77 2.49 -90.08 -0.22 -2.00 16 17 C -0.09 -1.19 5.61 -25.37 -0.14 -1.33 16 18 C -0.17 -2.45 6.76 -89.50 -0.60 -3.05 16 19 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 20 C -0.16 -1.86 10.09 -26.73 -0.27 -2.13 16 21 C -0.15 -2.26 6.55 -89.50 -0.59 -2.84 16 22 H 0.11 1.74 8.14 -51.93 -0.42 1.31 16 23 C -0.08 -1.08 5.81 -25.07 -0.15 -1.23 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.03 0.67 6.66 -51.93 -0.35 0.33 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.05 0.80 7.01 -51.93 -0.36 0.43 16 29 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 30 H 0.05 0.70 6.26 -51.93 -0.33 0.37 16 31 H 0.09 1.23 7.27 -51.93 -0.38 0.85 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.21 5.68 -51.93 -0.30 0.92 16 34 H 0.09 1.00 8.14 -51.92 -0.42 0.57 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.30 7.47 -51.93 -0.39 0.92 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 290.08 15.07 4.37 4.37 Total: -1.00 -30.95 290.08 -7.80 -38.76 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -5.60 Total: 1.99 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -1.78 Total: -9.58 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.14 Total: -38.13 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.95 -7.80 -38.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156801106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.580 kcal (2) G-P(sol) polarization free energy of solvation -30.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds