Wall clock time and date at job start Mon Mar 30 2020 03:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46865 * 2 1 4 4 C 1.50692 * 109.47033 * 120.00433 * 2 1 3 5 5 H 1.08005 * 119.99978 * 120.00373 * 4 2 1 6 6 C 1.37873 * 120.00100 * 299.99597 * 4 2 1 7 7 N 1.31511 * 120.00174 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00112 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47248 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47382 * 120.00436 * 8 6 4 11 11 H 1.48502 * 109.47484 * 240.00528 * 8 6 4 12 12 N 1.46497 * 109.46985 * 240.00759 * 2 1 3 13 13 C 1.46503 * 119.99993 * 299.99703 * 12 2 1 14 14 C 1.34780 * 120.00186 * 120.00049 * 12 2 1 15 15 O 1.21282 * 119.99829 * 359.97438 * 14 12 2 16 16 C 1.50699 * 119.99968 * 179.97438 * 14 12 2 17 17 C 1.54326 * 110.25608 * 293.35486 * 16 14 12 18 18 C 1.54270 * 104.46612 * 278.97782 * 17 16 14 19 19 H 1.09002 * 117.41500 * 117.17000 * 18 17 16 20 20 C 1.52999 * 118.68445 * 272.98240 * 18 17 16 21 21 C 1.53000 * 60.37711 * 93.34448 * 20 18 17 22 22 H 1.09000 * 119.75259 * 111.12703 * 21 20 18 23 23 C 1.54271 * 118.19743 * 266.37669 * 21 20 18 24 24 H 1.09001 * 109.47210 * 299.99481 * 1 2 3 25 25 H 1.09004 * 109.47637 * 59.99818 * 1 2 3 26 26 H 1.09000 * 109.47063 * 179.97438 * 1 2 3 27 27 H 0.96996 * 120.00158 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46676 * 269.99976 * 13 12 2 29 29 H 1.08995 * 109.46975 * 30.00347 * 13 12 2 30 30 H 1.08999 * 109.47402 * 150.00760 * 13 12 2 31 31 H 1.09000 * 110.67548 * 56.76497 * 16 14 12 32 32 H 1.09002 * 109.67722 * 160.54949 * 17 16 14 33 33 H 1.09002 * 111.04220 * 38.08617 * 17 16 14 34 34 H 1.09010 * 117.45722 * 200.94272 * 20 18 17 35 35 H 1.08997 * 117.46363 * 345.74505 * 20 18 17 36 36 H 1.08993 * 110.48418 * 206.47064 * 23 21 20 37 37 H 1.08996 * 110.48262 * 328.98575 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8295 2.6034 8 14 2.3225 -1.1198 4.0078 9 1 3.1484 -2.2859 3.6036 10 1 3.1472 -0.1861 4.8160 11 1 1.1678 -1.5870 4.8164 12 7 2.0183 -0.6904 -1.1962 13 6 1.6644 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0858 1.1259 -1.8915 16 6 3.2959 -0.7458 -3.3136 17 6 4.2889 -1.8594 -2.9192 18 6 5.6253 -1.1221 -2.6944 19 1 6.0529 -1.1526 -1.6922 20 6 6.5452 -0.8872 -3.8942 21 6 5.5406 0.1931 -3.4885 22 1 5.8975 1.1332 -3.0679 23 6 4.1615 0.2026 -4.1799 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7083 1.1606 3.4844 28 1 2.4158 -2.7375 -0.9720 29 1 0.6904 -2.3001 -0.9849 30 1 1.6238 -2.2850 -2.5004 31 1 2.4644 -1.1471 -3.8931 32 1 4.3809 -2.5753 -3.7361 33 1 3.9715 -2.3610 -2.0050 34 1 7.5988 -0.6960 -3.6898 35 1 6.3381 -1.4500 -4.8043 36 1 3.7418 1.2085 -4.1802 37 1 4.2430 -0.1761 -5.1987 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156801106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:21 Heat of formation + Delta-G solvation = -30.775748 kcal Electronic energy + Delta-G solvation = -17662.463271 eV Core-core repulsion = 15018.644866 eV Total energy + Delta-G solvation = -2643.818405 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.50674 -39.27738 -37.06080 -34.88659 -32.98826 -30.99898 -29.07777 -27.60821 -27.30645 -24.95087 -22.87072 -21.59332 -20.62922 -19.53786 -18.52308 -17.73307 -17.32127 -16.93656 -16.24539 -15.95333 -15.07512 -14.53516 -14.38065 -14.05742 -13.83906 -13.58700 -13.42745 -13.00444 -12.99311 -12.74801 -12.67308 -12.44251 -12.26247 -12.21127 -12.13311 -12.03307 -11.72396 -11.16919 -10.93940 -10.70667 -10.55881 -10.26052 -9.27840 -8.16082 -6.32785 1.37888 1.39587 1.50964 1.88922 2.32993 2.51743 2.75391 3.11407 3.58505 3.69695 3.76880 4.06434 4.28589 4.40488 4.44319 4.52084 4.60586 4.66141 4.73007 4.82449 4.86575 4.87800 4.91934 4.96826 5.04406 5.10021 5.25669 5.30336 5.34886 5.41546 5.46553 5.64712 5.69039 6.05131 6.16239 6.76218 6.90644 7.33262 7.55431 8.88384 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.030505 B = 0.007306 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.653568 B = 3831.287892 C = 4141.159362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.004 0.996 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.272 1.272 12 N -0.602 5.602 13 C 0.083 3.917 14 C 0.500 3.500 15 O -0.606 6.606 16 C -0.107 4.107 17 C -0.078 4.078 18 C -0.191 4.191 19 H 0.082 0.918 20 C -0.116 4.116 21 C -0.181 4.181 22 H 0.079 0.921 23 C -0.071 4.071 24 H 0.066 0.934 25 H 0.019 0.981 26 H 0.049 0.951 27 H 0.264 0.736 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.053 0.947 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 -9.429 -13.579 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.022 0.978 4 C -0.574 4.574 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.189 1.189 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.332 5.332 13 C -0.059 4.059 14 C 0.290 3.710 15 O -0.488 6.488 16 C -0.128 4.128 17 C -0.115 4.115 18 C -0.209 4.209 19 H 0.101 0.899 20 C -0.152 4.152 21 C -0.199 4.199 22 H 0.098 0.902 23 C -0.108 4.108 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.148 0.852 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.138 0.862 36 H 0.072 0.928 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.267 -8.740 -13.318 16.778 hybrid contribution 0.122 0.431 1.623 1.683 sum 5.389 -8.309 -11.695 15.325 Atomic orbital electron populations 1.21871 0.97198 1.00142 0.99850 1.18488 0.91593 0.92048 0.82059 0.97834 1.21607 1.31638 1.12882 0.91232 0.92296 1.25757 0.95141 0.95671 1.02084 1.70032 1.37479 1.24013 1.24321 0.85417 0.78286 0.78480 0.78901 1.18878 1.21249 1.19751 1.48197 1.49225 1.13351 1.22402 1.21876 1.01181 0.80516 1.02317 1.21333 0.77557 0.86535 0.85583 1.90588 1.59910 1.19980 1.78312 1.22453 1.00246 0.97009 0.93081 1.21902 0.90534 0.95901 1.03196 1.23287 1.00013 1.00735 0.96913 0.89943 1.23140 0.95604 0.98866 0.97614 1.23169 0.98474 0.93258 1.05045 0.90246 1.21779 0.91593 0.98972 0.98464 0.91543 0.96172 0.93203 0.92672 0.92697 0.91388 0.88483 0.85193 0.86824 0.91092 0.87776 0.86247 0.92839 0.87368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.54 8.95 71.98 0.64 -5.89 16 2 C 0.26 14.00 2.64 44.24 0.12 14.12 16 3 H 0.00 0.24 6.90 -2.39 -0.02 0.22 16 4 C -0.54 -29.89 8.37 25.60 0.21 -29.67 16 5 H 0.06 3.21 7.65 -2.91 -0.02 3.18 16 6 C 0.01 0.71 5.30 84.65 0.45 1.16 16 7 N -0.92 -54.31 11.32 21.45 0.24 -54.07 16 8 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 9 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 10 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.60 -25.97 2.75 -826.81 -2.28 -28.24 16 13 C 0.08 2.62 8.32 127.77 1.06 3.68 16 14 C 0.50 21.17 6.72 87.66 0.59 21.76 16 15 O -0.61 -32.03 14.85 -3.04 -0.05 -32.07 16 16 C -0.11 -3.01 2.49 -10.44 -0.03 -3.03 16 17 C -0.08 -1.88 5.61 31.47 0.18 -1.70 16 18 C -0.19 -5.27 6.76 -10.07 -0.07 -5.34 16 19 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 20 C -0.12 -2.35 10.09 30.59 0.31 -2.04 16 21 C -0.18 -5.19 6.55 -10.07 -0.07 -5.26 16 22 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 23 C -0.07 -1.89 5.81 31.67 0.18 -1.71 16 24 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 25 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 26 H 0.05 2.21 6.66 -2.39 -0.02 2.20 16 27 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 28 H 0.05 1.67 7.01 -2.39 -0.02 1.65 16 29 H 0.07 2.17 6.43 -2.39 -0.02 2.16 16 30 H 0.10 2.17 6.26 -2.39 -0.01 2.15 16 31 H 0.13 2.74 7.27 -2.39 -0.02 2.73 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.89 5.68 -2.39 -0.01 1.88 16 34 H 0.10 1.89 8.14 -2.38 -0.02 1.88 16 35 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.05 1.73 7.47 -2.39 -0.02 1.71 16 37 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -72.31 290.08 4.58 -67.73 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 1.05 Total: 14.59 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 3.59 Total: -13.92 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -2.03 Total: -82.31 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.05 Total: -32.07 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -72.31 4.58 -67.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156801106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.952 kcal (2) G-P(sol) polarization free energy of solvation -72.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds