Wall clock time and date at job start Mon Mar 30 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.40514 * 2 1 4 4 C 1.53068 * 109.40266 * 240.16605 * 2 1 3 5 5 C 1.53347 * 108.42254 * 191.05944 * 4 2 1 6 6 C 1.52919 * 108.67819 * 67.53592 * 5 4 2 7 7 N 1.45762 * 110.48188 * 309.24597 * 6 5 4 8 8 C 1.46505 * 117.94104 * 199.07504 * 7 6 5 9 9 C 1.53000 * 109.46961 * 93.82696 * 8 7 6 10 10 C 1.50698 * 115.55113 * 305.03531 * 9 8 7 11 11 H 1.07999 * 120.00527 * 95.18006 * 10 9 8 12 12 C 1.37881 * 119.99847 * 275.18333 * 10 9 8 13 13 N 1.31517 * 119.99896 * 6.13037 * 12 10 9 14 14 Si 1.86803 * 120.00029 * 186.13317 * 12 10 9 15 15 H 1.48500 * 109.46866 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46892 * 299.99798 * 14 12 10 17 17 H 1.48501 * 109.47080 * 59.99890 * 14 12 10 18 18 C 1.52998 * 117.49922 * 90.70477 * 9 8 7 19 19 C 1.53000 * 117.49949 * 159.36458 * 9 8 7 20 20 C 1.33348 * 124.10802 * 19.35551 * 7 6 5 21 21 O 1.21281 * 118.24470 * 177.50264 * 20 7 6 22 22 H 1.09000 * 109.47142 * 179.82828 * 1 2 3 23 23 H 1.08993 * 109.47412 * 299.82929 * 1 2 3 24 24 H 1.08997 * 109.46901 * 59.83605 * 1 2 3 25 25 H 1.09001 * 109.67176 * 71.32883 * 4 2 1 26 26 H 1.09004 * 109.70435 * 310.80650 * 4 2 1 27 27 H 1.09002 * 109.60438 * 307.77341 * 5 4 2 28 28 H 1.09005 * 109.73261 * 187.36984 * 5 4 2 29 29 H 1.09000 * 109.30220 * 188.93646 * 6 5 4 30 30 H 1.08996 * 109.30250 * 69.55602 * 6 5 4 31 31 H 1.08995 * 109.47026 * 333.82603 * 8 7 6 32 32 H 1.08999 * 109.46917 * 213.82222 * 8 7 6 33 33 H 0.97000 * 120.00043 * 355.20219 * 13 12 10 34 34 H 1.09002 * 117.50009 * 214.99987 * 18 9 8 35 35 H 1.08998 * 117.49873 * 0.02562 * 18 9 8 36 36 H 1.09010 * 117.49586 * 359.97438 * 19 9 8 37 37 H 1.08990 * 117.50217 * 144.96915 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0385 -0.7182 -1.2524 5 6 3.5462 -0.9518 -1.0986 6 6 3.7730 -1.9628 0.0260 7 7 3.0463 -1.5637 1.2249 8 6 3.4620 -2.1436 2.5045 9 6 4.4578 -1.2058 3.1898 10 6 5.6671 -0.8318 2.3720 11 1 5.6708 0.0854 1.8017 12 6 6.7688 -1.6606 2.3518 13 7 6.7210 -2.8326 2.9465 14 14 8.3293 -1.1187 1.4796 15 1 9.3595 -2.1812 1.6027 16 1 8.0356 -0.8772 0.0441 17 1 8.8335 0.1332 2.0992 18 6 3.8931 -0.1480 4.1402 19 6 4.6461 -1.3572 4.7006 20 6 2.0236 -0.7081 1.2292 21 8 1.4655 -0.4860 2.2829 22 1 -0.3633 -1.0277 -0.0031 23 1 -0.3634 0.5111 0.8914 24 1 -0.3633 0.5164 -0.8885 25 1 1.8505 -0.1012 -2.1311 26 1 1.5280 -1.6754 -1.3600 27 1 4.0385 -0.0115 -0.8499 28 1 3.9550 -1.3432 -2.0302 29 1 4.8379 -2.0178 0.2518 30 1 3.4250 -2.9442 -0.2962 31 1 3.9345 -3.1099 2.3290 32 1 2.5891 -2.2765 3.1437 33 1 5.9366 -3.0852 3.4582 34 1 4.3962 0.8183 4.1739 35 1 2.8121 -0.1206 4.2775 36 1 4.0600 -2.1247 5.2064 37 1 5.6445 -1.1868 5.1030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229451669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:21 Heat of formation + Delta-G solvation = -29.119677 kcal Electronic energy + Delta-G solvation = -18073.127455 eV Core-core repulsion = 15429.380862 eV Total energy + Delta-G solvation = -2643.746593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.02192 -36.76740 -35.84687 -33.88348 -31.85904 -30.45802 -26.44682 -26.34486 -24.83458 -22.39016 -21.82730 -21.07076 -19.38372 -18.14763 -16.64066 -16.02126 -15.69269 -14.84940 -14.24760 -13.84400 -13.76840 -13.59612 -13.03209 -12.79443 -12.60012 -12.46962 -12.12637 -11.79817 -11.25806 -11.10779 -10.97772 -10.81570 -10.72635 -10.63170 -10.39389 -10.25861 -10.15326 -9.61130 -8.97150 -8.50363 -8.41779 -8.26222 -7.70731 -6.34910 -4.06722 3.33774 3.36985 3.41562 3.58826 3.76723 4.47323 4.86948 4.95039 5.00775 5.16389 5.31154 5.33881 5.59256 5.64338 5.69522 5.79202 5.90511 5.99181 6.09352 6.14374 6.20604 6.27088 6.30701 6.42614 6.47205 6.56477 6.62424 6.70076 6.82554 7.00929 7.22617 7.35905 7.46861 8.25118 8.37267 8.42206 8.88723 8.93057 9.65486 11.03680 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025738 B = 0.010002 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.613019 B = 2798.744766 C = 3486.813926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.105 4.105 3 H 0.097 0.903 4 C -0.117 4.117 5 C -0.134 4.134 6 C 0.113 3.887 7 N -0.569 5.569 8 C 0.147 3.853 9 C 0.008 3.992 10 C -0.558 4.558 11 H 0.047 0.953 12 C 0.025 3.975 13 N -0.907 5.907 14 Si 1.061 2.939 15 H -0.283 1.283 16 H -0.288 1.288 17 H -0.289 1.289 18 C -0.186 4.186 19 C -0.182 4.182 20 C 0.513 3.487 21 O -0.563 6.563 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.275 0.725 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.148 2.137 -8.663 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 H 0.115 0.885 4 C -0.154 4.154 5 C -0.172 4.172 6 C -0.010 4.010 7 N -0.298 5.298 8 C 0.025 3.975 9 C 0.006 3.994 10 C -0.596 4.596 11 H 0.065 0.935 12 C -0.180 4.180 13 N -0.542 5.542 14 Si 0.890 3.110 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.216 1.216 18 C -0.223 4.223 19 C -0.220 4.220 20 C 0.301 3.699 21 O -0.443 6.443 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.891 1.723 -8.571 10.543 hybrid contribution -1.325 0.592 0.452 1.520 sum -7.216 2.315 -8.119 11.106 Atomic orbital electron populations 1.21620 0.93100 1.02076 1.02096 1.21186 0.97393 1.00626 0.93421 0.88524 1.21731 0.96210 1.00630 0.96857 1.21853 0.95890 1.00774 0.98682 1.21420 0.99568 0.95899 0.84094 1.46967 1.30677 1.43453 1.08744 1.21138 0.96314 0.96116 0.83950 1.19432 0.95748 0.96074 0.88121 1.21164 0.98450 1.09000 1.30954 0.93472 1.25694 1.01067 0.93679 0.97550 1.70739 1.33752 1.18903 1.30803 0.83658 0.75971 0.75628 0.75789 1.20830 1.21448 1.21610 1.22880 0.97834 0.93621 1.07963 1.22736 1.00072 0.99827 0.99347 1.19820 0.80068 0.79677 0.90353 1.90614 1.57661 1.63795 1.32263 0.92826 0.91495 0.92384 0.91330 0.91554 0.90847 0.90473 0.88239 0.93282 0.91396 0.92514 0.91378 0.91094 0.90281 0.91741 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.72 8.87 37.16 0.33 -1.39 16 2 C -0.11 -1.58 2.96 -91.98 -0.27 -1.85 16 3 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 4 C -0.12 -1.46 5.33 -26.52 -0.14 -1.60 16 5 C -0.13 -1.89 6.02 -26.59 -0.16 -2.06 16 6 C 0.11 2.00 6.04 -4.48 -0.03 1.97 16 7 N -0.57 -11.55 2.62 -174.95 -0.46 -12.01 16 8 C 0.15 3.36 5.08 -4.04 -0.02 3.34 16 9 C 0.01 0.19 1.16 -155.66 -0.18 0.01 16 10 C -0.56 -14.77 7.04 -34.44 -0.24 -15.01 16 11 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 12 C 0.03 0.68 5.37 -17.82 -0.10 0.58 16 13 N -0.91 -25.57 13.57 55.43 0.75 -24.82 16 14 Si 1.06 23.97 29.91 -169.99 -5.08 18.88 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.29 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 18 C -0.19 -4.47 9.54 -26.69 -0.25 -4.73 16 19 C -0.18 -4.38 8.69 -26.69 -0.23 -4.61 16 20 C 0.51 10.18 6.99 -11.86 -0.08 10.10 16 21 O -0.56 -12.89 13.95 5.56 0.08 -12.81 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.96 7.78 -51.93 -0.40 0.56 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 27 H 0.07 1.13 8.12 -51.93 -0.42 0.70 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.10 2.05 6.77 -51.93 -0.35 1.70 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.57 7.64 -51.93 -0.40 1.18 16 32 H 0.06 1.31 7.21 -51.93 -0.37 0.94 16 33 H 0.27 7.75 6.14 -40.82 -0.25 7.50 16 34 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 35 H 0.08 1.91 7.06 -51.93 -0.37 1.54 16 36 H 0.06 1.45 8.14 -51.92 -0.42 1.02 16 37 H 0.08 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 294.38 15.07 4.44 4.44 Total: -1.00 -29.84 294.38 -7.65 -37.49 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -6.00 Total: 4.07 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.38 Total: -15.25 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.29 Total: -36.82 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.08 Total: -12.81 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.08 Total: 18.88 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.84 -7.65 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229451669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.375 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds