Wall clock time and date at job start Mon Mar 30 2020 03:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.40514 * 2 1 4 4 C 1.53068 * 109.40266 * 240.16605 * 2 1 3 5 5 C 1.53347 * 108.42254 * 191.05944 * 4 2 1 6 6 C 1.52919 * 108.67819 * 67.53592 * 5 4 2 7 7 N 1.45762 * 110.48188 * 309.24597 * 6 5 4 8 8 C 1.46505 * 117.94104 * 199.07504 * 7 6 5 9 9 C 1.53000 * 109.46961 * 93.82696 * 8 7 6 10 10 C 1.50698 * 115.55113 * 305.03531 * 9 8 7 11 11 H 1.07999 * 120.00527 * 95.18006 * 10 9 8 12 12 C 1.37881 * 119.99847 * 275.18333 * 10 9 8 13 13 N 1.31517 * 119.99896 * 6.13037 * 12 10 9 14 14 Si 1.86803 * 120.00029 * 186.13317 * 12 10 9 15 15 H 1.48500 * 109.46866 * 179.97438 * 14 12 10 16 16 H 1.48501 * 109.46892 * 299.99798 * 14 12 10 17 17 H 1.48501 * 109.47080 * 59.99890 * 14 12 10 18 18 C 1.52998 * 117.49922 * 90.70477 * 9 8 7 19 19 C 1.53000 * 117.49949 * 159.36458 * 9 8 7 20 20 C 1.33348 * 124.10802 * 19.35551 * 7 6 5 21 21 O 1.21281 * 118.24470 * 177.50264 * 20 7 6 22 22 H 1.09000 * 109.47142 * 179.82828 * 1 2 3 23 23 H 1.08993 * 109.47412 * 299.82929 * 1 2 3 24 24 H 1.08997 * 109.46901 * 59.83605 * 1 2 3 25 25 H 1.09001 * 109.67176 * 71.32883 * 4 2 1 26 26 H 1.09004 * 109.70435 * 310.80650 * 4 2 1 27 27 H 1.09002 * 109.60438 * 307.77341 * 5 4 2 28 28 H 1.09005 * 109.73261 * 187.36984 * 5 4 2 29 29 H 1.09000 * 109.30220 * 188.93646 * 6 5 4 30 30 H 1.08996 * 109.30250 * 69.55602 * 6 5 4 31 31 H 1.08995 * 109.47026 * 333.82603 * 8 7 6 32 32 H 1.08999 * 109.46917 * 213.82222 * 8 7 6 33 33 H 0.97000 * 120.00043 * 355.20219 * 13 12 10 34 34 H 1.09002 * 117.50009 * 214.99987 * 18 9 8 35 35 H 1.08998 * 117.49873 * 0.02562 * 18 9 8 36 36 H 1.09010 * 117.49586 * 359.97438 * 19 9 8 37 37 H 1.08990 * 117.50217 * 144.96915 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0385 -0.7182 -1.2524 5 6 3.5462 -0.9518 -1.0986 6 6 3.7730 -1.9628 0.0260 7 7 3.0463 -1.5637 1.2249 8 6 3.4620 -2.1436 2.5045 9 6 4.4578 -1.2058 3.1898 10 6 5.6671 -0.8318 2.3720 11 1 5.6708 0.0854 1.8017 12 6 6.7688 -1.6606 2.3518 13 7 6.7210 -2.8326 2.9465 14 14 8.3293 -1.1187 1.4796 15 1 9.3595 -2.1812 1.6027 16 1 8.0356 -0.8772 0.0441 17 1 8.8335 0.1332 2.0992 18 6 3.8931 -0.1480 4.1402 19 6 4.6461 -1.3572 4.7006 20 6 2.0236 -0.7081 1.2292 21 8 1.4655 -0.4860 2.2829 22 1 -0.3633 -1.0277 -0.0031 23 1 -0.3634 0.5111 0.8914 24 1 -0.3633 0.5164 -0.8885 25 1 1.8505 -0.1012 -2.1311 26 1 1.5280 -1.6754 -1.3600 27 1 4.0385 -0.0115 -0.8499 28 1 3.9550 -1.3432 -2.0302 29 1 4.8379 -2.0178 0.2518 30 1 3.4250 -2.9442 -0.2962 31 1 3.9345 -3.1099 2.3290 32 1 2.5891 -2.2765 3.1437 33 1 5.9366 -3.0852 3.4582 34 1 4.3962 0.8183 4.1739 35 1 2.8121 -0.1206 4.2775 36 1 4.0600 -2.1247 5.2064 37 1 5.6445 -1.1868 5.1030 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229451669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:21 Heat of formation + Delta-G solvation = -45.568256 kcal Electronic energy + Delta-G solvation = -18073.840719 eV Core-core repulsion = 15429.380862 eV Total energy + Delta-G solvation = -2644.459856 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.53950 -38.65288 -37.29019 -35.31600 -33.93374 -31.76234 -28.19615 -27.56647 -26.88189 -23.75509 -23.10100 -23.03557 -21.32163 -19.54197 -18.56427 -17.45985 -17.34572 -16.47507 -15.63181 -15.52526 -15.43119 -15.19744 -14.52406 -14.40390 -14.23413 -13.88312 -13.63860 -13.10775 -12.95897 -12.78729 -12.58703 -12.31305 -12.23485 -12.02501 -11.94884 -11.83620 -11.53393 -11.47508 -10.59844 -10.51637 -10.42044 -10.18606 -9.40624 -8.49753 -6.21750 1.55249 1.61603 1.79922 1.80947 2.24513 2.58542 3.26595 3.28629 3.66040 3.85521 3.90510 3.98055 4.12351 4.29427 4.40134 4.47073 4.52756 4.58892 4.66169 4.71694 4.81509 4.82791 4.88921 4.98047 5.00324 5.03981 5.12881 5.19901 5.30735 5.35110 5.39649 5.43199 5.67103 6.17951 6.27510 6.73148 6.80208 7.37145 7.56394 8.89486 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025738 B = 0.010002 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.613019 B = 2798.744766 C = 3486.813926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 H 0.101 0.899 4 C -0.106 4.106 5 C -0.128 4.128 6 C 0.108 3.892 7 N -0.575 5.575 8 C 0.157 3.843 9 C -0.006 4.006 10 C -0.558 4.558 11 H 0.034 0.966 12 C -0.011 4.011 13 N -0.928 5.928 14 Si 1.102 2.898 15 H -0.287 1.287 16 H -0.263 1.263 17 H -0.284 1.284 18 C -0.177 4.177 19 C -0.178 4.178 20 C 0.501 3.499 21 O -0.602 6.602 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.094 0.906 25 H 0.106 0.894 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.265 0.735 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.591 2.699 -11.219 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.123 4.123 3 H 0.119 0.881 4 C -0.143 4.143 5 C -0.166 4.166 6 C -0.014 4.014 7 N -0.303 5.303 8 C 0.033 3.967 9 C -0.007 4.007 10 C -0.596 4.596 11 H 0.052 0.948 12 C -0.212 4.212 13 N -0.564 5.564 14 Si 0.926 3.074 15 H -0.212 1.212 16 H -0.188 1.188 17 H -0.211 1.211 18 C -0.214 4.214 19 C -0.216 4.216 20 C 0.291 3.709 21 O -0.485 6.485 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.113 0.887 25 H 0.124 0.876 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.127 0.873 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.351 2.293 -11.155 13.039 hybrid contribution -1.212 0.420 1.308 1.832 sum -7.563 2.712 -9.847 12.709 Atomic orbital electron populations 1.21602 0.91478 1.02324 1.02888 1.21282 0.98639 1.00244 0.92130 0.88145 1.21723 0.94492 1.01529 0.96592 1.21857 0.97464 0.98963 0.98282 1.21558 0.97269 0.98283 0.84302 1.47116 1.31112 1.43558 1.08506 1.20825 0.95186 0.95324 0.85355 1.19583 0.95984 0.96742 0.88371 1.21210 0.99259 1.08337 1.30813 0.94820 1.26853 1.03641 0.93123 0.97569 1.70847 1.33514 1.19968 1.32056 0.83112 0.72755 0.75189 0.76385 1.21227 1.18822 1.21059 1.22762 0.97582 0.93268 1.07788 1.22675 0.99409 1.00231 0.99327 1.20857 0.79283 0.79044 0.91750 1.90585 1.58805 1.64864 1.34216 0.92890 0.93510 0.88734 0.87587 0.90567 0.92320 0.87288 0.91659 0.91443 0.92448 0.93430 0.92481 0.91577 0.90370 0.90323 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.87 71.98 0.64 -2.31 16 2 C -0.10 -2.82 2.96 -11.67 -0.03 -2.85 16 3 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 4 C -0.11 -2.21 5.33 30.73 0.16 -2.04 16 5 C -0.13 -3.23 6.02 30.68 0.18 -3.05 16 6 C 0.11 3.70 6.04 86.49 0.52 4.23 16 7 N -0.57 -23.25 2.62 -826.60 -2.17 -25.41 16 8 C 0.16 7.31 5.08 86.38 0.44 7.75 16 9 C -0.01 -0.28 1.16 -52.93 -0.06 -0.34 16 10 C -0.56 -29.91 7.04 25.60 0.18 -29.73 16 11 H 0.03 1.86 7.82 -2.91 -0.02 1.84 16 12 C -0.01 -0.61 5.37 84.66 0.45 -0.16 16 13 N -0.93 -52.93 13.57 21.45 0.29 -52.64 16 14 Si 1.10 47.82 29.91 68.60 2.05 49.87 16 15 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 18 C -0.18 -8.67 9.54 30.62 0.29 -8.38 16 19 C -0.18 -8.77 8.69 30.62 0.27 -8.51 16 20 C 0.50 19.62 6.99 87.72 0.61 20.23 16 21 O -0.60 -27.85 13.95 -3.03 -0.04 -27.90 16 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.05 1.28 7.78 -2.39 -0.02 1.26 16 24 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 25 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 27 H 0.06 1.67 8.12 -2.39 -0.02 1.65 16 28 H 0.11 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.06 2.69 6.77 -2.39 -0.02 2.67 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.06 2.75 7.64 -2.39 -0.02 2.73 16 32 H 0.05 2.26 7.21 -2.39 -0.02 2.25 16 33 H 0.26 15.27 6.14 -92.71 -0.57 14.70 16 34 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 35 H 0.08 3.85 7.06 -2.39 -0.02 3.83 16 36 H 0.08 3.59 8.14 -2.38 -0.02 3.57 16 37 H 0.06 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -65.43 294.38 5.02 -60.41 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.23 Total: 20.81 kcal Atomic # 6 Polarization: -28.81 SS G_CDS: 3.66 Total: -25.15 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.88 Total: -78.05 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.04 Total: -27.90 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.05 Total: 49.87 kcal Total: -65.43 5.02 -60.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229451669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.847 kcal (2) G-P(sol) polarization free energy of solvation -65.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds