Wall clock time and date at job start Mon Mar 30 2020 03:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47348 * 2 1 4 4 C 1.37097 * 120.00090 * 273.96483 * 3 2 1 5 5 H 1.08005 * 119.99940 * 185.18726 * 4 3 2 6 6 C 1.38952 * 119.99955 * 5.19033 * 4 3 2 7 7 N 1.31413 * 119.99793 * 15.23445 * 6 4 3 8 8 Si 1.86800 * 120.00111 * 195.23050 * 6 4 3 9 9 H 1.48498 * 109.46803 * 59.99912 * 8 6 4 10 10 H 1.48491 * 109.47088 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47050 * 300.00305 * 8 6 4 12 12 C 1.34779 * 119.99696 * 93.96913 * 3 2 1 13 13 O 1.21293 * 119.99440 * 185.85266 * 12 3 2 14 14 C 1.50696 * 120.00331 * 5.85465 * 12 3 2 15 15 H 1.09007 * 110.35554 * 320.97855 * 14 12 3 16 16 C 1.54578 * 110.40264 * 198.65326 * 14 12 3 17 17 C 1.56196 * 104.51438 * 241.23344 * 16 14 12 18 18 H 1.08997 * 116.49220 * 199.55038 * 17 16 14 19 19 C 1.55928 * 104.55683 * 70.20802 * 17 16 14 20 20 C 1.54583 * 104.64398 * 289.71478 * 19 17 16 21 21 C 1.55926 * 110.40364 * 83.30273 * 14 12 3 22 22 H 1.08999 * 115.91923 * 278.82504 * 21 14 12 23 23 C 1.56949 * 100.65148 * 152.57302 * 21 14 12 24 24 H 1.09005 * 109.46896 * 302.59777 * 1 2 3 25 25 H 1.09001 * 109.47423 * 62.59018 * 1 2 3 26 26 H 1.08996 * 109.47642 * 182.59474 * 1 2 3 27 27 H 1.09001 * 109.47316 * 240.00284 * 2 1 3 28 28 H 1.09000 * 109.47135 * 120.00363 * 2 1 3 29 29 H 0.97004 * 119.99994 * 180.02562 * 7 6 4 30 30 H 1.09003 * 110.40441 * 359.97438 * 16 14 12 31 31 H 1.08998 * 110.40594 * 122.41530 * 16 14 12 32 32 H 1.08998 * 110.40497 * 48.50809 * 19 17 16 33 33 H 1.09008 * 110.40173 * 170.81102 * 19 17 16 34 34 H 1.09000 * 110.40617 * 241.21023 * 20 19 17 35 35 H 1.09001 * 110.40304 * 118.79282 * 20 19 17 36 36 H 1.09001 * 112.03261 * 63.16961 * 23 21 14 37 37 H 1.09003 * 112.02786 * 189.69760 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1695 2.0549 -1.1844 5 1 2.6078 3.0419 -1.1922 6 6 1.7586 1.4678 -2.3749 7 7 0.9657 0.4201 -2.3515 8 14 2.3333 2.1678 -4.0087 9 1 3.8158 2.1152 -4.0756 10 1 1.7594 1.3670 -5.1196 11 1 1.8821 3.5774 -4.1293 12 6 2.3192 1.9896 1.1645 13 8 2.6214 3.1642 1.1745 14 6 2.2801 1.2104 2.4538 15 1 1.4349 0.5220 2.4554 16 6 2.1948 2.1713 3.6617 17 6 3.4914 1.8831 4.4835 18 1 3.4862 2.1990 5.5266 19 6 4.6469 2.4523 3.6048 20 6 4.7291 1.4914 2.3967 21 6 3.6155 0.4321 2.6593 22 1 3.7045 -0.5116 2.1211 23 6 3.6620 0.3443 4.2256 24 1 -0.3633 0.5537 0.8658 25 1 -0.3634 0.4731 -0.9123 26 1 -0.3634 -1.0265 0.0465 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.6791 0.0100 -3.1826 30 1 2.1815 3.2073 3.3230 31 1 1.3088 1.9540 4.2583 32 1 4.4087 3.4624 3.2714 33 1 5.5847 2.4478 4.1607 34 1 5.7075 1.0125 2.3579 35 1 4.5312 2.0290 1.4694 36 1 2.8290 -0.2323 4.6278 37 1 4.6215 -0.0267 4.5859 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238251032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:08 Heat of formation + Delta-G solvation = -20.198095 kcal Electronic energy + Delta-G solvation = -18208.745394 eV Core-core repulsion = 15565.385670 eV Total energy + Delta-G solvation = -2643.359724 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30025 -37.55841 -34.96311 -31.73247 -30.07010 -29.28069 -28.91115 -27.41359 -24.85782 -22.23679 -21.81235 -19.78224 -19.43043 -17.64038 -16.71034 -16.29109 -15.64976 -14.98246 -14.63554 -13.96920 -13.46954 -13.06038 -12.67958 -12.23992 -11.92858 -11.72655 -11.62723 -11.06981 -11.02814 -10.92368 -10.88594 -10.70743 -10.60742 -10.52943 -10.37950 -10.24625 -10.02232 -9.89976 -9.75206 -9.43498 -8.77474 -8.18685 -7.66204 -6.17869 -3.73850 3.20200 3.26430 3.30821 3.94013 4.15995 4.82425 4.86754 4.91783 5.13516 5.20209 5.62186 5.65102 5.73475 5.75794 5.89282 5.93679 5.94821 6.04212 6.11167 6.24997 6.38708 6.45587 6.47896 6.55206 6.63144 6.71122 6.75226 6.84743 6.87544 6.91873 6.99406 7.42593 7.58376 7.94876 8.15350 8.61362 9.26508 9.54317 10.09555 10.72792 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035919 B = 0.008289 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.346539 B = 3377.033610 C = 3713.104044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.125 3.875 3 N -0.446 5.446 4 C -0.293 4.293 5 H 0.101 0.899 6 C 0.021 3.979 7 N -0.877 5.877 8 Si 0.926 3.074 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.456 3.544 13 O -0.593 6.593 14 C -0.102 4.102 15 H 0.078 0.922 16 C -0.107 4.107 17 C -0.105 4.105 18 H 0.091 0.909 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.089 4.089 22 H 0.095 0.905 23 C -0.124 4.124 24 H 0.014 0.986 25 H 0.103 0.897 26 H 0.031 0.969 27 H 0.102 0.898 28 H 0.030 0.970 29 H 0.264 0.736 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -3.373 8.742 9.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.002 3.998 3 N -0.164 5.164 4 C -0.421 4.421 5 H 0.119 0.881 6 C -0.179 4.179 7 N -0.519 5.519 8 Si 0.753 3.247 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.245 3.755 13 O -0.479 6.479 14 C -0.124 4.124 15 H 0.096 0.904 16 C -0.144 4.144 17 C -0.123 4.123 18 H 0.109 0.891 19 C -0.150 4.150 20 C -0.162 4.162 21 C -0.107 4.107 22 H 0.113 0.887 23 C -0.161 4.161 24 H 0.033 0.967 25 H 0.122 0.878 26 H 0.050 0.950 27 H 0.120 0.880 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.004 -2.915 8.538 9.509 hybrid contribution 0.037 0.039 -0.886 0.888 sum 3.041 -2.876 7.652 8.722 Atomic orbital electron populations 1.22322 0.96760 0.99037 1.02454 1.21519 0.94643 0.83460 1.00196 1.43831 1.55704 1.11859 1.04981 1.19746 1.37408 1.02228 0.82746 0.88097 1.25217 0.96120 0.97055 0.99541 1.70137 1.31707 1.23042 1.27056 0.86000 0.79040 0.78740 0.80938 1.20146 1.21041 1.20082 1.19718 0.83830 0.87524 0.84474 1.90464 1.54622 1.16477 1.86309 1.22223 0.98205 0.97387 0.94601 0.90416 1.22594 0.96078 1.01217 0.94555 1.23581 0.96039 0.95234 0.97477 0.89131 1.22516 0.96870 0.99892 0.95746 1.22681 0.97097 0.96487 0.99979 1.23453 0.94632 0.97235 0.95413 0.88698 1.23585 1.00559 0.96224 0.95766 0.96711 0.87847 0.95020 0.88039 0.95128 0.92534 0.89641 0.92722 0.91149 0.93116 0.92994 0.89850 0.91677 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 9.59 37.16 0.36 -2.89 16 2 C 0.13 2.85 5.07 -4.04 -0.02 2.83 16 3 N -0.45 -11.37 2.63 -114.81 -0.30 -11.67 16 4 C -0.29 -8.11 9.50 -14.93 -0.14 -8.25 16 5 H 0.10 2.95 7.24 -52.48 -0.38 2.57 16 6 C 0.02 0.55 5.20 -17.47 -0.09 0.45 16 7 N -0.88 -22.36 7.43 55.50 0.41 -21.95 16 8 Si 0.93 20.72 29.58 -169.99 -5.03 15.69 16 9 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.46 11.05 5.24 -10.99 -0.06 10.99 16 13 O -0.59 -16.08 14.05 5.55 0.08 -16.00 16 14 C -0.10 -1.97 2.09 -89.38 -0.19 -2.16 16 15 H 0.08 1.45 6.87 -51.93 -0.36 1.10 16 16 C -0.11 -1.85 5.77 -24.19 -0.14 -1.99 16 17 C -0.11 -1.54 5.20 -85.20 -0.44 -1.98 16 18 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.11 -1.81 6.21 -24.33 -0.15 -1.97 16 20 C -0.13 -2.22 5.89 -24.34 -0.14 -2.37 16 21 C -0.09 -1.49 4.57 -85.35 -0.39 -1.88 16 22 H 0.09 1.54 7.62 -51.93 -0.40 1.14 16 23 C -0.12 -1.71 6.42 -22.45 -0.14 -1.86 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.10 2.58 5.77 -51.93 -0.30 2.28 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 2.49 6.00 -51.93 -0.31 2.18 16 28 H 0.03 0.61 5.42 -51.93 -0.28 0.33 16 29 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 30 H 0.09 1.71 6.37 -51.93 -0.33 1.38 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.27 7.84 -51.93 -0.41 0.86 16 33 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.82 5.64 -51.93 -0.29 1.53 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 277.98 15.07 4.19 4.19 Total: -1.00 -28.35 277.98 -7.78 -36.13 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -5.57 Total: 4.68 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -1.55 Total: -11.07 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.11 Total: -33.62 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.08 Total: -16.00 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.35 -7.78 -36.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238251032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.930 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds