Wall clock time and date at job start Mon Mar 30 2020 03:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46501 * 109.47348 * 2 1 4 4 C 1.37097 * 120.00090 * 273.96483 * 3 2 1 5 5 H 1.08005 * 119.99940 * 185.18726 * 4 3 2 6 6 C 1.38952 * 119.99955 * 5.19033 * 4 3 2 7 7 N 1.31413 * 119.99793 * 15.23445 * 6 4 3 8 8 Si 1.86800 * 120.00111 * 195.23050 * 6 4 3 9 9 H 1.48498 * 109.46803 * 59.99912 * 8 6 4 10 10 H 1.48491 * 109.47088 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47050 * 300.00305 * 8 6 4 12 12 C 1.34779 * 119.99696 * 93.96913 * 3 2 1 13 13 O 1.21293 * 119.99440 * 185.85266 * 12 3 2 14 14 C 1.50696 * 120.00331 * 5.85465 * 12 3 2 15 15 H 1.09007 * 110.35554 * 320.97855 * 14 12 3 16 16 C 1.54578 * 110.40264 * 198.65326 * 14 12 3 17 17 C 1.56196 * 104.51438 * 241.23344 * 16 14 12 18 18 H 1.08997 * 116.49220 * 199.55038 * 17 16 14 19 19 C 1.55928 * 104.55683 * 70.20802 * 17 16 14 20 20 C 1.54583 * 104.64398 * 289.71478 * 19 17 16 21 21 C 1.55926 * 110.40364 * 83.30273 * 14 12 3 22 22 H 1.08999 * 115.91923 * 278.82504 * 21 14 12 23 23 C 1.56949 * 100.65148 * 152.57302 * 21 14 12 24 24 H 1.09005 * 109.46896 * 302.59777 * 1 2 3 25 25 H 1.09001 * 109.47423 * 62.59018 * 1 2 3 26 26 H 1.08996 * 109.47642 * 182.59474 * 1 2 3 27 27 H 1.09001 * 109.47316 * 240.00284 * 2 1 3 28 28 H 1.09000 * 109.47135 * 120.00363 * 2 1 3 29 29 H 0.97004 * 119.99994 * 180.02562 * 7 6 4 30 30 H 1.09003 * 110.40441 * 359.97438 * 16 14 12 31 31 H 1.08998 * 110.40594 * 122.41530 * 16 14 12 32 32 H 1.08998 * 110.40497 * 48.50809 * 19 17 16 33 33 H 1.09008 * 110.40173 * 170.81102 * 19 17 16 34 34 H 1.09000 * 110.40617 * 241.21023 * 20 19 17 35 35 H 1.09001 * 110.40304 * 118.79282 * 20 19 17 36 36 H 1.09001 * 112.03261 * 63.16961 * 23 21 14 37 37 H 1.09003 * 112.02786 * 189.69760 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1695 2.0549 -1.1844 5 1 2.6078 3.0419 -1.1922 6 6 1.7586 1.4678 -2.3749 7 7 0.9657 0.4201 -2.3515 8 14 2.3333 2.1678 -4.0087 9 1 3.8158 2.1152 -4.0756 10 1 1.7594 1.3670 -5.1196 11 1 1.8821 3.5774 -4.1293 12 6 2.3192 1.9896 1.1645 13 8 2.6214 3.1642 1.1745 14 6 2.2801 1.2104 2.4538 15 1 1.4349 0.5220 2.4554 16 6 2.1948 2.1713 3.6617 17 6 3.4914 1.8831 4.4835 18 1 3.4862 2.1990 5.5266 19 6 4.6469 2.4523 3.6048 20 6 4.7291 1.4914 2.3967 21 6 3.6155 0.4321 2.6593 22 1 3.7045 -0.5116 2.1211 23 6 3.6620 0.3443 4.2256 24 1 -0.3633 0.5537 0.8658 25 1 -0.3634 0.4731 -0.9123 26 1 -0.3634 -1.0265 0.0465 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.6791 0.0100 -3.1826 30 1 2.1815 3.2073 3.3230 31 1 1.3088 1.9540 4.2583 32 1 4.4087 3.4624 3.2714 33 1 5.5847 2.4478 4.1607 34 1 5.7075 1.0125 2.3579 35 1 4.5312 2.0290 1.4694 36 1 2.8290 -0.2323 4.6278 37 1 4.6215 -0.0267 4.5859 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238251032.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:07 Heat of formation + Delta-G solvation = -35.658173 kcal Electronic energy + Delta-G solvation = -18209.415793 eV Core-core repulsion = 15565.385670 eV Total energy + Delta-G solvation = -2644.030123 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.79592 -39.28239 -36.92212 -33.71356 -31.59914 -31.08634 -30.26877 -28.68256 -26.77014 -23.98446 -23.43651 -21.24342 -20.77492 -19.25044 -18.64128 -18.02567 -17.03295 -16.52349 -16.46016 -15.79767 -15.15690 -14.72734 -14.56631 -13.74003 -13.48536 -13.38507 -13.18234 -12.89122 -12.64105 -12.56555 -12.43031 -12.17616 -12.12058 -12.03544 -11.84667 -11.79810 -11.68319 -11.57871 -11.21918 -10.76874 -10.72544 -10.10643 -9.63314 -8.17414 -5.81427 1.37478 1.40450 1.49921 2.10441 2.28671 3.11141 3.14553 3.61161 3.67854 3.71119 4.21568 4.29203 4.39431 4.40927 4.49016 4.52077 4.59997 4.63919 4.76758 4.91049 5.00387 5.01791 5.08306 5.14807 5.18255 5.24603 5.28441 5.34826 5.42722 5.43433 5.45164 5.59838 5.65379 6.05704 6.13270 6.63157 7.26012 7.60617 8.16599 8.70199 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035919 B = 0.008289 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.346539 B = 3377.033610 C = 3713.104044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.128 3.872 3 N -0.461 5.461 4 C -0.337 4.337 5 H 0.067 0.933 6 C -0.005 4.005 7 N -0.876 5.876 8 Si 0.983 3.017 9 H -0.276 1.276 10 H -0.267 1.267 11 H -0.281 1.281 12 C 0.447 3.553 13 O -0.635 6.635 14 C -0.101 4.101 15 H 0.087 0.913 16 C -0.110 4.110 17 C -0.093 4.093 18 H 0.125 0.875 19 C -0.113 4.113 20 C -0.129 4.129 21 C -0.091 4.091 22 H 0.102 0.898 23 C -0.105 4.105 24 H 0.016 0.984 25 H 0.073 0.927 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.270 0.730 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.086 0.914 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -5.513 10.488 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.006 3.994 3 N -0.179 5.179 4 C -0.465 4.465 5 H 0.085 0.915 6 C -0.205 4.205 7 N -0.517 5.517 8 Si 0.808 3.192 9 H -0.202 1.202 10 H -0.192 1.192 11 H -0.207 1.207 12 C 0.238 3.762 13 O -0.524 6.524 14 C -0.122 4.122 15 H 0.105 0.895 16 C -0.148 4.148 17 C -0.111 4.111 18 H 0.143 0.857 19 C -0.151 4.151 20 C -0.167 4.167 21 C -0.110 4.110 22 H 0.120 0.880 23 C -0.142 4.142 24 H 0.035 0.965 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.105 0.895 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.200 -5.091 10.287 11.916 hybrid contribution -0.043 0.743 -1.474 1.651 sum 3.157 -4.348 8.813 10.322 Atomic orbital electron populations 1.22161 0.96127 1.00464 1.00872 1.21531 0.95081 0.82126 1.00685 1.44062 1.56155 1.12811 1.04831 1.19579 1.40007 1.02070 0.84830 0.91468 1.25843 0.95584 0.97430 1.01672 1.70244 1.30614 1.22812 1.27982 0.85154 0.78464 0.77936 0.77660 1.20169 1.19165 1.20696 1.20691 0.82187 0.87471 0.85858 1.90426 1.56022 1.18690 1.87225 1.22280 1.00154 0.97607 0.92199 0.89471 1.22613 0.99051 0.98560 0.94565 1.23659 0.93036 0.96097 0.98262 0.85741 1.22507 0.99168 0.97683 0.95712 1.22656 0.98646 0.97034 0.98362 1.23552 0.92198 0.96609 0.98602 0.87971 1.23535 1.02894 0.95414 0.92335 0.96543 0.90889 0.92126 0.89929 0.92100 0.91994 0.93362 0.90321 0.94562 0.90226 0.91079 0.95167 0.89504 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.97 9.59 71.98 0.69 -5.28 16 2 C 0.13 5.82 5.07 86.38 0.44 6.25 16 3 N -0.46 -24.32 2.63 -635.54 -1.67 -25.99 16 4 C -0.34 -19.57 9.50 84.04 0.80 -18.77 16 5 H 0.07 4.25 7.24 -2.91 -0.02 4.23 16 6 C 0.00 -0.25 5.20 84.93 0.44 0.19 16 7 N -0.88 -44.81 7.43 21.66 0.16 -44.65 16 8 Si 0.98 43.24 29.58 68.60 2.03 45.27 16 9 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 C 0.45 22.55 5.24 87.66 0.46 23.01 16 13 O -0.64 -36.90 14.05 -3.07 -0.04 -36.94 16 14 C -0.10 -3.79 2.09 -9.99 -0.02 -3.81 16 15 H 0.09 3.08 6.87 -2.38 -0.02 3.06 16 16 C -0.11 -3.68 5.77 32.24 0.19 -3.50 16 17 C -0.09 -2.40 5.20 -7.28 -0.04 -2.44 16 18 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 19 C -0.11 -3.51 6.21 32.15 0.20 -3.31 16 20 C -0.13 -4.56 5.89 32.15 0.19 -4.37 16 21 C -0.09 -2.85 4.57 -7.38 -0.03 -2.89 16 22 H 0.10 3.04 7.62 -2.39 -0.02 3.02 16 23 C -0.10 -2.38 6.42 33.37 0.21 -2.17 16 24 H 0.02 0.66 8.14 -2.38 -0.02 0.65 16 25 H 0.07 3.64 5.77 -2.39 -0.01 3.63 16 26 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.08 4.05 6.00 -2.39 -0.01 4.03 16 28 H 0.06 2.35 5.42 -2.39 -0.01 2.33 16 29 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 30 H 0.05 1.99 6.37 -2.39 -0.02 1.97 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.04 1.35 7.84 -2.39 -0.02 1.33 16 33 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.03 1.38 5.64 -2.39 -0.01 1.36 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.80 277.98 5.05 -60.75 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 1.05 Total: 18.64 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: 3.53 Total: -17.08 kcal Atomic # 7 Polarization: -69.13 SS G_CDS: -1.51 Total: -70.64 kcal Atomic # 8 Polarization: -36.90 SS G_CDS: -0.04 Total: -36.94 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -65.80 5.05 -60.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238251032.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.090 kcal (2) G-P(sol) polarization free energy of solvation -65.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds