Wall clock time and date at job start Mon Mar 30 2020 03:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46913 * 2 1 4 4 C 1.46502 * 120.00114 * 266.24311 * 3 2 1 5 5 C 1.50692 * 109.47107 * 269.99965 * 4 3 2 6 6 H 1.08001 * 120.00322 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00289 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99656 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00308 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47545 * 89.99846 * 9 7 5 11 11 H 1.48509 * 109.47216 * 209.99871 * 9 7 5 12 12 H 1.48500 * 109.47057 * 329.99339 * 9 7 5 13 13 C 1.34776 * 120.00024 * 86.23831 * 3 2 1 14 14 O 1.21283 * 119.99795 * 4.62467 * 13 3 2 15 15 C 1.50696 * 120.00092 * 184.34760 * 13 3 2 16 16 H 1.08999 * 110.67302 * 33.32285 * 15 13 3 17 17 C 1.54898 * 110.75605 * 269.88941 * 15 13 3 18 18 C 1.54261 * 104.19278 * 203.74340 * 17 15 13 19 19 H 1.09004 * 117.41224 * 163.58728 * 18 17 15 20 20 C 1.52998 * 118.20099 * 319.42666 * 18 17 15 21 21 C 1.52996 * 60.37689 * 93.62217 * 20 18 17 22 22 H 1.08994 * 119.75647 * 111.12798 * 21 20 18 23 23 C 1.54272 * 118.19709 * 266.38341 * 21 20 18 24 24 H 1.08998 * 109.47231 * 295.81824 * 1 2 3 25 25 H 1.08997 * 109.47956 * 55.82450 * 1 2 3 26 26 H 1.09004 * 109.46976 * 175.82785 * 1 2 3 27 27 H 1.09006 * 109.47050 * 240.00555 * 2 1 3 28 28 H 1.09001 * 109.47557 * 120.00008 * 2 1 3 29 29 H 1.09007 * 109.46878 * 29.99859 * 4 3 2 30 30 H 1.08999 * 109.47231 * 149.99844 * 4 3 2 31 31 H 0.97003 * 120.00010 * 179.97438 * 8 7 5 32 32 H 1.09002 * 110.48135 * 322.41824 * 17 15 13 33 33 H 1.08998 * 110.48691 * 85.05978 * 17 15 13 34 34 H 1.09000 * 117.46177 * 346.02261 * 20 18 17 35 35 H 1.09002 * 117.46244 * 201.21546 * 20 18 17 36 36 H 1.08994 * 110.48806 * 281.89389 * 23 21 20 37 37 H 1.08998 * 110.59602 * 159.30313 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3408 2.0442 -1.2660 5 6 3.7880 1.7990 -1.6070 6 1 4.4057 1.2081 -0.9469 7 6 4.3237 2.3291 -2.7616 8 7 3.5713 3.0483 -3.5657 9 14 6.1174 2.0245 -3.1846 10 1 6.2314 0.7859 -3.9959 11 1 6.6452 3.1752 -3.9611 12 1 6.9018 1.8705 -1.9332 13 6 2.1707 2.0422 1.1647 14 8 1.9843 1.4680 2.2166 15 6 2.5787 3.4928 1.1601 16 1 2.1657 4.0060 0.2916 17 6 4.1211 3.6294 1.2012 18 6 4.3608 5.0329 1.7949 19 1 5.3584 5.2534 2.1747 20 6 3.4526 6.1761 1.3377 21 6 3.1005 5.3900 2.6021 22 1 3.1696 5.8735 3.5765 23 6 2.1386 4.1910 2.4708 24 1 -0.3633 0.4476 0.9251 25 1 -0.3635 0.5772 -0.8501 26 1 -0.3633 -1.0250 -0.0748 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.7079 1.6431 -2.0577 30 1 2.1667 3.1159 -1.1696 31 1 3.9482 3.4215 -4.3778 32 1 4.5547 2.8638 1.8446 33 1 4.5367 3.5644 0.1957 34 1 2.8383 6.0071 0.4533 35 1 3.8224 7.1936 1.4651 36 1 1.1077 4.5358 2.3918 37 1 2.2501 3.5154 3.3188 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249832735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:05 Heat of formation + Delta-G solvation = -23.057557 kcal Electronic energy + Delta-G solvation = -17683.173934 eV Core-core repulsion = 15039.690214 eV Total energy + Delta-G solvation = -2643.483719 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.94131 -38.05701 -35.14403 -32.81592 -31.47518 -29.88224 -27.76736 -26.99198 -24.29536 -23.01036 -22.15832 -19.74822 -19.32203 -17.90639 -16.71383 -16.39893 -15.75761 -14.97894 -14.59268 -14.04270 -13.70571 -13.21867 -12.96671 -12.77609 -12.49427 -12.36190 -11.92635 -11.60654 -11.47708 -11.08776 -11.00645 -10.94045 -10.82193 -10.57090 -10.39129 -10.33130 -10.04661 -9.73914 -9.71076 -9.15587 -8.92670 -8.51838 -7.68220 -6.17827 -4.24073 3.22481 3.30076 3.32629 3.44069 3.97593 4.05208 4.34168 4.81517 5.05713 5.15426 5.26538 5.40106 5.51138 5.65614 5.77987 5.83875 5.87943 5.90999 5.93228 5.97450 6.21730 6.27827 6.28034 6.39861 6.45793 6.48687 6.56923 6.65191 6.71314 6.87259 6.89420 7.21741 7.58524 7.77731 8.07413 8.39040 8.81176 9.07894 9.42977 10.88832 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.011257 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.619325 B = 2486.649094 C = 3706.710059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.114 3.886 3 N -0.595 5.595 4 C 0.236 3.764 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.526 3.474 14 O -0.577 6.577 15 C -0.110 4.110 16 H 0.100 0.900 17 C -0.078 4.078 18 C -0.161 4.161 19 H 0.106 0.894 20 C -0.155 4.155 21 C -0.173 4.173 22 H 0.105 0.895 23 C -0.080 4.080 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 2.540 6.504 7.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.325 5.325 4 C 0.116 3.884 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 C 0.314 3.686 14 O -0.459 6.459 15 C -0.131 4.131 16 H 0.118 0.882 17 C -0.115 4.115 18 C -0.179 4.179 19 H 0.124 0.876 20 C -0.191 4.191 21 C -0.191 4.191 22 H 0.123 0.877 23 C -0.118 4.118 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.985 2.318 6.837 7.487 hybrid contribution 1.051 -0.076 -0.539 1.183 sum -0.935 2.242 6.298 6.750 Atomic orbital electron populations 1.22114 0.96991 1.01196 1.01858 1.21218 0.93254 0.84092 1.02348 1.48264 1.62803 1.13194 1.08236 1.19463 0.96172 0.93367 0.79357 1.21463 0.95485 1.33285 1.06823 0.92106 1.24916 0.98041 0.94821 0.95926 1.69922 1.36037 1.34087 1.12884 0.86570 0.84858 0.77871 0.78659 1.20610 1.21063 1.19679 1.20279 0.76317 0.88723 0.83271 1.90556 1.53954 1.69786 1.31612 1.22164 0.98200 0.93262 0.99438 0.88234 1.21824 0.93151 0.93579 1.02988 1.23124 0.94909 0.95497 1.04349 0.87578 1.22903 1.02738 0.95499 0.98003 1.23125 0.99324 1.00654 0.95962 0.87678 1.21827 0.97721 0.94489 0.97715 0.92900 0.92616 0.92463 0.90495 0.91339 0.94844 0.94239 0.92564 0.91389 0.88506 0.88603 0.88837 0.91994 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 10.22 37.16 0.38 -2.27 16 2 C 0.11 2.16 6.13 -4.04 -0.02 2.14 16 3 N -0.60 -12.71 2.46 -175.06 -0.43 -13.14 16 4 C 0.24 5.55 5.02 -5.20 -0.03 5.53 16 5 C -0.53 -13.53 8.20 -34.44 -0.28 -13.81 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.14 13.29 55.43 0.74 -23.41 16 9 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 C 0.53 11.21 6.83 -10.99 -0.08 11.13 16 14 O -0.58 -13.30 15.42 5.55 0.09 -13.21 16 15 C -0.11 -2.07 2.05 -89.78 -0.18 -2.26 16 16 H 0.10 1.94 5.42 -51.93 -0.28 1.66 16 17 C -0.08 -1.45 6.17 -25.07 -0.15 -1.60 16 18 C -0.16 -2.51 7.06 -89.51 -0.63 -3.14 16 19 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 20 C -0.15 -2.22 9.83 -26.73 -0.26 -2.48 16 21 C -0.17 -2.51 7.06 -89.50 -0.63 -3.14 16 22 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 23 C -0.08 -1.32 6.06 -25.07 -0.15 -1.47 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.08 1.43 8.04 -51.93 -0.42 1.01 16 28 H 0.07 1.31 7.48 -51.93 -0.39 0.92 16 29 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.04 0.96 5.81 -51.93 -0.30 0.66 16 31 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 33 H 0.10 2.02 6.95 -51.93 -0.36 1.66 16 34 H 0.10 1.48 7.21 -51.93 -0.37 1.11 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.08 1.48 7.23 -51.93 -0.38 1.11 16 LS Contribution 299.49 15.07 4.51 4.51 Total: -1.00 -27.74 299.49 -8.10 -35.84 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -5.84 Total: 3.84 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -2.14 Total: -9.76 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.31 Total: -36.55 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.74 -8.10 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249832735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.781 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds