Wall clock time and date at job start Mon Mar 30 2020 03:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46913 * 2 1 4 4 C 1.46502 * 120.00114 * 266.24311 * 3 2 1 5 5 C 1.50692 * 109.47107 * 269.99965 * 4 3 2 6 6 H 1.08001 * 120.00322 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00289 * 180.02562 * 5 4 3 8 8 N 1.31521 * 119.99656 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00308 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47545 * 89.99846 * 9 7 5 11 11 H 1.48509 * 109.47216 * 209.99871 * 9 7 5 12 12 H 1.48500 * 109.47057 * 329.99339 * 9 7 5 13 13 C 1.34776 * 120.00024 * 86.23831 * 3 2 1 14 14 O 1.21283 * 119.99795 * 4.62467 * 13 3 2 15 15 C 1.50696 * 120.00092 * 184.34760 * 13 3 2 16 16 H 1.08999 * 110.67302 * 33.32285 * 15 13 3 17 17 C 1.54898 * 110.75605 * 269.88941 * 15 13 3 18 18 C 1.54261 * 104.19278 * 203.74340 * 17 15 13 19 19 H 1.09004 * 117.41224 * 163.58728 * 18 17 15 20 20 C 1.52998 * 118.20099 * 319.42666 * 18 17 15 21 21 C 1.52996 * 60.37689 * 93.62217 * 20 18 17 22 22 H 1.08994 * 119.75647 * 111.12798 * 21 20 18 23 23 C 1.54272 * 118.19709 * 266.38341 * 21 20 18 24 24 H 1.08998 * 109.47231 * 295.81824 * 1 2 3 25 25 H 1.08997 * 109.47956 * 55.82450 * 1 2 3 26 26 H 1.09004 * 109.46976 * 175.82785 * 1 2 3 27 27 H 1.09006 * 109.47050 * 240.00555 * 2 1 3 28 28 H 1.09001 * 109.47557 * 120.00008 * 2 1 3 29 29 H 1.09007 * 109.46878 * 29.99859 * 4 3 2 30 30 H 1.08999 * 109.47231 * 149.99844 * 4 3 2 31 31 H 0.97003 * 120.00010 * 179.97438 * 8 7 5 32 32 H 1.09002 * 110.48135 * 322.41824 * 17 15 13 33 33 H 1.08998 * 110.48691 * 85.05978 * 17 15 13 34 34 H 1.09000 * 117.46177 * 346.02261 * 20 18 17 35 35 H 1.09002 * 117.46244 * 201.21546 * 20 18 17 36 36 H 1.08994 * 110.48806 * 281.89389 * 23 21 20 37 37 H 1.08998 * 110.59602 * 159.30313 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3408 2.0442 -1.2660 5 6 3.7880 1.7990 -1.6070 6 1 4.4057 1.2081 -0.9469 7 6 4.3237 2.3291 -2.7616 8 7 3.5713 3.0483 -3.5657 9 14 6.1174 2.0245 -3.1846 10 1 6.2314 0.7859 -3.9959 11 1 6.6452 3.1752 -3.9611 12 1 6.9018 1.8705 -1.9332 13 6 2.1707 2.0422 1.1647 14 8 1.9843 1.4680 2.2166 15 6 2.5787 3.4928 1.1601 16 1 2.1657 4.0060 0.2916 17 6 4.1211 3.6294 1.2012 18 6 4.3608 5.0329 1.7949 19 1 5.3584 5.2534 2.1747 20 6 3.4526 6.1761 1.3377 21 6 3.1005 5.3900 2.6021 22 1 3.1696 5.8735 3.5765 23 6 2.1386 4.1910 2.4708 24 1 -0.3633 0.4476 0.9251 25 1 -0.3635 0.5772 -0.8501 26 1 -0.3633 -1.0250 -0.0748 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8900 29 1 1.7079 1.6431 -2.0577 30 1 2.1667 3.1159 -1.1696 31 1 3.9482 3.4215 -4.3778 32 1 4.5547 2.8638 1.8446 33 1 4.5367 3.5644 0.1957 34 1 2.8383 6.0071 0.4533 35 1 3.8224 7.1936 1.4651 36 1 1.1077 4.5358 2.3918 37 1 2.2501 3.5154 3.3188 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249832735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:05 Heat of formation + Delta-G solvation = -36.819710 kcal Electronic energy + Delta-G solvation = -17683.770705 eV Core-core repulsion = 15039.690214 eV Total energy + Delta-G solvation = -2644.080491 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.46755 -39.54296 -36.92009 -34.73432 -32.99939 -31.38788 -29.14801 -28.90505 -25.72973 -24.95077 -23.56901 -21.15045 -20.57736 -19.54808 -18.46458 -18.26642 -17.34997 -16.52605 -16.40051 -15.61240 -15.30130 -14.59199 -14.41000 -14.30393 -14.20020 -13.89311 -13.57337 -13.29605 -13.13408 -12.72808 -12.66800 -12.43306 -12.26664 -12.14736 -11.93865 -11.87112 -11.76308 -11.58451 -10.95713 -10.70616 -10.51151 -10.37388 -9.47101 -8.18975 -6.31538 1.40358 1.43148 1.51855 1.73032 2.30472 2.45845 2.84371 3.11600 3.49530 3.74071 3.78407 4.10566 4.22996 4.24573 4.34384 4.39624 4.47077 4.53242 4.55455 4.76240 4.81294 4.91471 4.94394 4.98942 5.03203 5.06432 5.16317 5.24956 5.28256 5.32438 5.38237 5.41994 5.67257 5.87424 6.07638 6.57275 6.82439 7.30835 7.42419 8.86818 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.016384 B = 0.011257 C = 0.007552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.619325 B = 2486.649094 C = 3706.710059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.253 3.747 5 C -0.535 4.535 6 H 0.049 0.951 7 C 0.026 3.974 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.271 1.271 13 C 0.520 3.480 14 O -0.596 6.596 15 C -0.110 4.110 16 H 0.090 0.910 17 C -0.075 4.075 18 C -0.173 4.173 19 H 0.126 0.874 20 C -0.148 4.148 21 C -0.158 4.158 22 H 0.135 0.865 23 C -0.077 4.077 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.020 0.980 30 H 0.031 0.969 31 H 0.267 0.733 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.123 0.877 36 H 0.072 0.928 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.504 3.311 7.156 8.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.016 4.016 3 N -0.330 5.330 4 C 0.132 3.868 5 C -0.574 4.574 6 H 0.067 0.933 7 C -0.174 4.174 8 N -0.557 5.557 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.196 1.196 13 C 0.309 3.691 14 O -0.479 6.479 15 C -0.131 4.131 16 H 0.108 0.892 17 C -0.113 4.113 18 C -0.191 4.191 19 H 0.144 0.856 20 C -0.184 4.184 21 C -0.176 4.176 22 H 0.152 0.848 23 C -0.115 4.115 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.141 0.859 36 H 0.091 0.909 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.610 3.077 7.491 8.256 hybrid contribution 0.898 -0.374 -0.748 1.227 sum -0.712 2.703 6.743 7.299 Atomic orbital electron populations 1.22009 0.94637 1.03115 1.01208 1.21411 0.95218 0.82803 1.02166 1.48322 1.62879 1.14146 1.07605 1.19118 0.95040 0.92861 0.79804 1.21546 0.96187 1.32978 1.06696 0.93257 1.25548 1.01490 0.94574 0.95813 1.70002 1.37560 1.34853 1.13301 0.85681 0.80623 0.77862 0.78321 1.20212 1.20519 1.19580 1.20714 0.75802 0.89693 0.82852 1.90534 1.54870 1.70499 1.32009 1.22171 0.98527 0.91803 1.00609 0.89160 1.21697 0.92570 0.95787 1.01278 1.23126 0.96522 0.94095 1.05363 0.85606 1.23005 1.01661 0.96508 0.97262 1.23172 0.97283 0.99749 0.97367 0.84764 1.21800 0.99010 0.95033 0.95620 0.93739 0.92901 0.89315 0.90400 0.91723 0.96228 0.95160 0.92362 0.92517 0.91416 0.90246 0.85851 0.90920 0.90757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.78 10.22 71.98 0.74 -4.05 16 2 C 0.11 4.04 6.13 86.38 0.53 4.57 16 3 N -0.60 -26.08 2.46 -826.14 -2.03 -28.12 16 4 C 0.25 12.15 5.02 85.63 0.43 12.58 16 5 C -0.54 -27.67 8.20 25.60 0.21 -27.46 16 6 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 7 C 0.03 1.37 5.46 84.65 0.46 1.83 16 8 N -0.92 -49.99 13.29 21.45 0.28 -49.71 16 9 Si 0.95 41.67 29.54 68.60 2.03 43.70 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 12 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 13 C 0.52 22.49 6.83 87.66 0.60 23.09 16 14 O -0.60 -27.65 15.42 -3.04 -0.05 -27.69 16 15 C -0.11 -4.20 2.05 -10.25 -0.02 -4.22 16 16 H 0.09 3.60 5.42 -2.39 -0.01 3.59 16 17 C -0.08 -2.83 6.17 31.67 0.20 -2.63 16 18 C -0.17 -5.10 7.06 -10.07 -0.07 -5.17 16 19 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 20 C -0.15 -3.89 9.83 30.59 0.30 -3.59 16 21 C -0.16 -4.17 7.06 -10.07 -0.07 -4.25 16 22 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 23 C -0.08 -2.45 6.06 31.67 0.19 -2.26 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.08 2.89 8.04 -2.38 -0.02 2.87 16 28 H 0.06 2.48 7.48 -2.39 -0.02 2.47 16 29 H 0.02 1.00 8.07 -2.38 -0.02 0.98 16 30 H 0.03 1.52 5.81 -2.39 -0.01 1.51 16 31 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 32 H 0.06 2.20 8.04 -2.39 -0.02 2.18 16 33 H 0.07 2.90 6.95 -2.39 -0.02 2.89 16 34 H 0.08 2.37 7.21 -2.39 -0.02 2.36 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.07 2.54 7.23 -2.39 -0.02 2.53 16 Total: -1.00 -58.71 299.49 4.76 -53.95 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 1.04 Total: 19.43 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 3.49 Total: -11.56 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -1.75 Total: -77.82 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.69 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -58.71 4.76 -53.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249832735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.127 kcal (2) G-P(sol) polarization free energy of solvation -58.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds