Wall clock time and date at job start Mon Mar 30 2020 03:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46922 * 2 1 4 4 C 1.50696 * 109.47384 * 240.00420 * 2 1 3 5 5 H 1.07999 * 119.99881 * 240.00392 * 4 2 1 6 6 C 1.37883 * 120.00172 * 59.99550 * 4 2 1 7 7 N 1.31516 * 119.99854 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00113 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47190 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47313 * 120.00141 * 8 6 4 11 11 H 1.48497 * 109.46792 * 240.00307 * 8 6 4 12 12 N 1.46493 * 109.46983 * 120.00091 * 2 1 3 13 13 C 1.46500 * 120.00061 * 60.00438 * 12 2 1 14 14 C 1.34787 * 120.00053 * 240.00006 * 12 2 1 15 15 O 1.21273 * 119.99592 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99785 * 180.02562 * 14 12 2 17 17 H 1.09002 * 110.67359 * 56.76964 * 16 14 12 18 18 C 1.54892 * 110.75587 * 293.32829 * 16 14 12 19 19 C 1.54264 * 104.19651 * 279.62693 * 18 16 14 20 20 H 1.08999 * 117.41507 * 117.57861 * 19 18 16 21 21 C 1.52998 * 118.20354 * 272.21420 * 19 18 16 22 22 C 1.53165 * 60.49458 * 93.66026 * 21 19 18 23 23 H 1.08999 * 119.93352 * 111.13128 * 22 21 19 24 24 C 1.54266 * 118.09930 * 266.60163 * 22 21 19 25 25 H 1.09002 * 109.46970 * 59.99992 * 1 2 3 26 26 H 1.08995 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46796 * 299.99975 * 1 2 3 28 28 H 0.96997 * 119.99779 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46744 * 269.99627 * 13 12 2 30 30 H 1.08999 * 109.47111 * 29.99519 * 13 12 2 31 31 H 1.09000 * 109.47082 * 150.00259 * 13 12 2 32 32 H 1.08993 * 110.48715 * 38.31113 * 18 16 14 33 33 H 1.09006 * 110.48300 * 160.95607 * 18 16 14 34 34 H 1.09003 * 117.46306 * 201.21298 * 21 19 18 35 35 H 1.08998 * 117.45808 * 346.04249 * 21 19 18 36 36 H 1.09002 * 110.48609 * 328.86434 * 24 22 21 37 37 H 1.08998 * 110.48769 * 206.35527 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 3.1467 -2.2867 -3.6039 10 1 1.1663 -1.5864 -4.8161 11 1 3.1467 -0.1870 -4.8164 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1256 1.8917 16 6 3.2960 -0.7462 3.3135 17 1 3.8575 -1.6394 3.0395 18 6 2.1229 -1.0996 4.2612 19 6 1.8367 0.2152 5.0155 20 1 0.8546 0.6681 4.8797 21 6 2.6205 0.4981 6.2986 22 6 3.1353 1.0456 4.9639 23 1 3.1167 2.1185 4.7727 24 6 4.1616 0.2020 4.1799 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7095 1.1619 -3.4844 29 1 0.7376 -2.1444 1.9992 30 1 1.5296 -2.5968 0.4707 31 1 2.4629 -2.5818 1.9863 32 1 1.2490 -1.4085 3.6878 33 1 2.4190 -1.8830 4.9590 34 1 2.1926 1.2124 7.0020 35 1 3.1683 -0.3312 6.7461 36 1 4.7869 -0.3712 4.8645 37 1 4.7772 0.8414 3.5471 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251440754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:27 Heat of formation + Delta-G solvation = -12.889883 kcal Electronic energy + Delta-G solvation = -17606.169222 eV Core-core repulsion = 14963.126406 eV Total energy + Delta-G solvation = -2643.042816 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12792 -37.84221 -35.22518 -32.97664 -31.56712 -29.20444 -27.99109 -26.07481 -25.20120 -23.54676 -21.56995 -20.12228 -19.49878 -17.95921 -16.49859 -16.20545 -16.07908 -15.24259 -14.61173 -14.20584 -13.66252 -13.04744 -12.87801 -12.55657 -12.42179 -12.25383 -11.69263 -11.62324 -11.30609 -11.15319 -11.02267 -10.90978 -10.82150 -10.70321 -10.56101 -10.21697 -10.15670 -9.90169 -9.56192 -9.13542 -8.74010 -8.39870 -7.51241 -6.05545 -4.13356 3.26535 3.34323 3.37052 3.47173 3.75513 4.04116 4.41604 4.62868 4.80508 4.94758 5.21798 5.25825 5.35534 5.50714 5.58101 5.60572 5.68404 5.80536 5.83726 5.91193 5.99316 6.12151 6.24279 6.33547 6.35185 6.45801 6.51436 6.78800 6.87268 7.10624 7.49053 7.58377 7.75151 8.05555 8.23610 8.61076 8.86972 9.16230 9.53457 10.99788 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044930 B = 0.006274 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.038678 B = 4461.474260 C = 4475.764268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.593 5.593 13 C 0.084 3.916 14 C 0.515 3.485 15 O -0.550 6.550 16 C -0.116 4.116 17 H 0.095 0.905 18 C -0.086 4.086 19 C -0.170 4.170 20 H 0.106 0.894 21 C -0.157 4.157 22 C -0.151 4.151 23 H 0.110 0.890 24 C -0.076 4.076 25 H 0.092 0.908 26 H 0.028 0.972 27 H 0.010 0.990 28 H 0.262 0.738 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -5.379 13.541 14.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.325 5.325 13 C -0.060 4.060 14 C 0.301 3.699 15 O -0.429 6.429 16 C -0.137 4.137 17 H 0.113 0.887 18 C -0.124 4.124 19 C -0.188 4.188 20 H 0.124 0.876 21 C -0.194 4.194 22 C -0.169 4.169 23 H 0.128 0.872 24 C -0.114 4.114 25 H 0.111 0.889 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.807 -4.654 13.249 14.158 hybrid contribution 0.141 -0.543 -0.954 1.107 sum 1.948 -5.197 12.294 13.489 Atomic orbital electron populations 1.22070 0.98324 0.99291 1.00680 1.18907 0.90791 0.94524 0.80066 0.92007 1.21373 1.31618 1.12931 0.90360 0.92248 1.24905 0.94983 0.94998 0.98976 1.69896 1.36500 1.22650 1.23590 0.86445 0.78579 0.79584 0.82808 1.19832 1.20951 1.20931 1.48181 1.49235 1.11487 1.23552 1.21644 0.98631 0.83571 1.02125 1.20137 0.79029 0.87006 0.83697 1.90613 1.58380 1.17112 1.76755 1.22470 0.97329 0.99253 0.94652 0.88714 1.21994 0.97937 0.95777 0.96670 1.23231 0.96696 0.98230 1.00649 0.87555 1.23081 1.03013 1.02720 0.90583 1.23243 0.96015 0.99210 0.98451 0.87199 1.21775 0.96321 0.96593 0.96695 0.88949 0.95244 0.97113 0.92779 0.93941 0.90323 0.92815 0.90262 0.90950 0.88864 0.89289 0.91471 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.97 37.16 0.33 -3.21 16 2 C 0.26 6.68 2.64 -69.08 -0.18 6.50 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.52 -14.30 7.99 -34.44 -0.28 -14.58 16 5 H 0.06 1.60 7.33 -52.49 -0.38 1.21 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 8 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.59 -12.81 2.75 -175.26 -0.48 -13.29 16 13 C 0.08 1.43 8.08 59.85 0.48 1.91 16 14 C 0.51 10.79 6.74 -10.98 -0.07 10.72 16 15 O -0.55 -13.75 14.85 5.56 0.08 -13.66 16 16 C -0.12 -1.78 2.47 -89.78 -0.22 -2.00 16 17 H 0.09 1.29 7.27 -51.93 -0.38 0.91 16 18 C -0.09 -1.13 5.68 -25.07 -0.14 -1.27 16 19 C -0.17 -2.31 6.77 -89.32 -0.60 -2.92 16 20 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 21 C -0.16 -1.77 10.06 -26.65 -0.27 -2.04 16 22 C -0.15 -2.14 6.58 -89.23 -0.59 -2.73 16 23 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 24 C -0.08 -1.10 5.78 -25.07 -0.14 -1.24 16 25 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 26 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 27 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.04 0.64 7.03 -51.93 -0.36 0.28 16 30 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 31 H 0.05 0.75 6.27 -51.93 -0.33 0.42 16 32 H 0.08 1.08 5.69 -51.93 -0.30 0.78 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.34 7.47 -51.93 -0.39 0.95 16 LS Contribution 290.88 15.07 4.38 4.38 Total: -1.00 -30.85 290.88 -7.85 -38.71 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -5.67 Total: 1.71 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: -1.78 Total: -9.19 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.15 Total: -38.09 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.08 Total: -13.66 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.85 -7.85 -38.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251440754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.817 kcal (2) G-P(sol) polarization free energy of solvation -30.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds