Wall clock time and date at job start Mon Mar 30 2020 03:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46922 * 2 1 4 4 C 1.50696 * 109.47384 * 240.00420 * 2 1 3 5 5 H 1.07999 * 119.99881 * 240.00392 * 4 2 1 6 6 C 1.37883 * 120.00172 * 59.99550 * 4 2 1 7 7 N 1.31516 * 119.99854 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00113 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47190 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47313 * 120.00141 * 8 6 4 11 11 H 1.48497 * 109.46792 * 240.00307 * 8 6 4 12 12 N 1.46493 * 109.46983 * 120.00091 * 2 1 3 13 13 C 1.46500 * 120.00061 * 60.00438 * 12 2 1 14 14 C 1.34787 * 120.00053 * 240.00006 * 12 2 1 15 15 O 1.21273 * 119.99592 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99785 * 180.02562 * 14 12 2 17 17 H 1.09002 * 110.67359 * 56.76964 * 16 14 12 18 18 C 1.54892 * 110.75587 * 293.32829 * 16 14 12 19 19 C 1.54264 * 104.19651 * 279.62693 * 18 16 14 20 20 H 1.08999 * 117.41507 * 117.57861 * 19 18 16 21 21 C 1.52998 * 118.20354 * 272.21420 * 19 18 16 22 22 C 1.53165 * 60.49458 * 93.66026 * 21 19 18 23 23 H 1.08999 * 119.93352 * 111.13128 * 22 21 19 24 24 C 1.54266 * 118.09930 * 266.60163 * 22 21 19 25 25 H 1.09002 * 109.46970 * 59.99992 * 1 2 3 26 26 H 1.08995 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46796 * 299.99975 * 1 2 3 28 28 H 0.96997 * 119.99779 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46744 * 269.99627 * 13 12 2 30 30 H 1.08999 * 109.47111 * 29.99519 * 13 12 2 31 31 H 1.09000 * 109.47082 * 150.00259 * 13 12 2 32 32 H 1.08993 * 110.48715 * 38.31113 * 18 16 14 33 33 H 1.09006 * 110.48300 * 160.95607 * 18 16 14 34 34 H 1.09003 * 117.46306 * 201.21298 * 21 19 18 35 35 H 1.08998 * 117.45808 * 346.04249 * 21 19 18 36 36 H 1.09002 * 110.48609 * 328.86434 * 24 22 21 37 37 H 1.08998 * 110.48769 * 206.35527 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 3.1467 -2.2867 -3.6039 10 1 1.1663 -1.5864 -4.8161 11 1 3.1467 -0.1870 -4.8164 12 7 2.0183 -0.6906 1.1961 13 6 1.6645 -2.0932 1.4279 14 6 2.7932 -0.0356 2.0834 15 8 3.0858 1.1256 1.8917 16 6 3.2960 -0.7462 3.3135 17 1 3.8575 -1.6394 3.0395 18 6 2.1229 -1.0996 4.2612 19 6 1.8367 0.2152 5.0155 20 1 0.8546 0.6681 4.8797 21 6 2.6205 0.4981 6.2986 22 6 3.1353 1.0456 4.9639 23 1 3.1167 2.1185 4.7727 24 6 4.1616 0.2020 4.1799 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7095 1.1619 -3.4844 29 1 0.7376 -2.1444 1.9992 30 1 1.5296 -2.5968 0.4707 31 1 2.4629 -2.5818 1.9863 32 1 1.2490 -1.4085 3.6878 33 1 2.4190 -1.8830 4.9590 34 1 2.1926 1.2124 7.0020 35 1 3.1683 -0.3312 6.7461 36 1 4.7869 -0.3712 4.8645 37 1 4.7772 0.8414 3.5471 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251440754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:26 Heat of formation + Delta-G solvation = -31.320466 kcal Electronic energy + Delta-G solvation = -17606.968432 eV Core-core repulsion = 14963.126406 eV Total energy + Delta-G solvation = -2643.842026 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.48010 -39.25580 -37.05548 -34.87506 -32.94776 -31.00032 -29.08769 -27.56530 -27.31853 -24.93249 -22.88322 -21.62283 -20.61342 -19.51247 -18.45151 -17.82257 -17.32711 -16.91322 -16.26963 -15.89192 -14.91938 -14.72489 -14.33111 -13.86994 -13.77906 -13.68242 -13.49721 -13.04731 -12.95447 -12.76705 -12.68565 -12.43393 -12.26046 -12.20592 -12.10472 -12.02972 -11.71136 -11.18701 -10.93220 -10.69703 -10.55186 -10.26256 -9.27650 -8.15411 -6.32312 1.40005 1.41629 1.53207 1.88938 2.33496 2.52510 2.75485 3.12384 3.59374 3.69297 3.77638 4.06428 4.26976 4.41426 4.44609 4.52407 4.60836 4.68357 4.75221 4.77711 4.86988 4.87952 4.93227 4.98760 5.06625 5.07452 5.25023 5.30282 5.34841 5.42018 5.47647 5.62441 5.68234 6.05442 6.16545 6.76856 6.90490 7.33683 7.55471 8.89281 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044930 B = 0.006274 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.038678 B = 4461.474260 C = 4475.764268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.261 3.739 3 H 0.003 0.997 4 C -0.536 4.536 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.967 3.033 9 H -0.263 1.263 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.601 5.601 13 C 0.080 3.920 14 C 0.502 3.498 15 O -0.605 6.605 16 C -0.109 4.109 17 H 0.123 0.877 18 C -0.077 4.077 19 C -0.187 4.187 20 H 0.090 0.910 21 C -0.119 4.119 22 C -0.180 4.180 23 H 0.082 0.918 24 C -0.073 4.073 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.016 0.984 28 H 0.264 0.736 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.234 -8.412 15.274 17.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.158 3.842 3 H 0.021 0.979 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.792 3.208 9 H -0.187 1.187 10 H -0.199 1.199 11 H -0.212 1.212 12 N -0.331 5.331 13 C -0.062 4.062 14 C 0.291 3.709 15 O -0.488 6.488 16 C -0.130 4.130 17 H 0.141 0.859 18 C -0.114 4.114 19 C -0.205 4.205 20 H 0.109 0.891 21 C -0.155 4.155 22 C -0.199 4.199 23 H 0.100 0.900 24 C -0.110 4.110 25 H 0.084 0.916 26 H 0.066 0.934 27 H 0.035 0.965 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.093 0.907 33 H 0.131 0.869 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.123 0.877 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.276 -7.729 15.008 17.034 hybrid contribution -0.017 0.488 -1.472 1.551 sum 2.259 -7.241 13.536 15.516 Atomic orbital electron populations 1.21846 0.97340 1.00013 0.99629 1.18485 0.91494 0.92088 0.82083 0.97864 1.21624 1.31721 1.13001 0.91136 0.91976 1.25790 0.95090 0.95664 1.02187 1.70045 1.37507 1.24029 1.24345 0.85367 0.78210 0.78472 0.78714 1.18712 1.19921 1.21233 1.48199 1.49290 1.13330 1.22328 1.21909 1.01181 0.80675 1.02414 1.21279 0.77978 0.86665 0.84955 1.90586 1.60173 1.19855 1.78150 1.22520 0.98701 0.99584 0.92182 0.85892 1.22015 0.96594 0.96300 0.96496 1.23344 0.95730 0.98464 1.03011 0.89140 1.23177 1.00459 1.02774 0.89095 1.23221 0.96839 0.98031 1.01782 0.90016 1.21776 0.96201 0.96367 0.96688 0.91586 0.93394 0.96530 0.92685 0.91678 0.91558 0.89019 0.90721 0.86868 0.87639 0.86531 0.87670 0.93170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.48 8.97 71.98 0.65 -5.83 16 2 C 0.26 14.03 2.64 44.25 0.12 14.14 16 3 H 0.00 0.22 6.90 -2.38 -0.02 0.20 16 4 C -0.54 -29.73 7.99 25.60 0.20 -29.53 16 5 H 0.06 3.33 7.33 -2.91 -0.02 3.31 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.28 11.32 21.45 0.24 -54.04 16 8 Si 0.97 43.59 29.54 68.60 2.03 45.62 16 9 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 12 N -0.60 -25.98 2.75 -826.79 -2.28 -28.26 16 13 C 0.08 2.53 8.08 127.77 1.03 3.56 16 14 C 0.50 21.29 6.74 87.65 0.59 21.89 16 15 O -0.61 -32.08 14.85 -3.01 -0.04 -32.13 16 16 C -0.11 -3.09 2.47 -10.25 -0.03 -3.12 16 17 H 0.12 2.81 7.27 -2.39 -0.02 2.80 16 18 C -0.08 -1.72 5.68 31.67 0.18 -1.54 16 19 C -0.19 -4.73 6.77 -9.95 -0.07 -4.80 16 20 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 21 C -0.12 -2.26 10.06 30.65 0.31 -1.95 16 22 C -0.18 -4.97 6.58 -9.89 -0.07 -5.04 16 23 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 24 C -0.07 -1.98 5.78 31.67 0.18 -1.79 16 25 H 0.07 3.65 6.07 -2.39 -0.01 3.64 16 26 H 0.05 2.15 7.67 -2.39 -0.02 2.13 16 27 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.06 1.76 7.03 -2.38 -0.02 1.75 16 30 H 0.07 2.26 7.02 -2.39 -0.02 2.25 16 31 H 0.09 2.17 6.27 -2.39 -0.01 2.16 16 32 H 0.07 1.76 5.69 -2.39 -0.01 1.75 16 33 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 37 H 0.05 1.67 7.47 -2.39 -0.02 1.65 16 Total: -1.00 -71.75 290.88 4.55 -67.20 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.05 Total: 14.50 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 3.55 Total: -12.89 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -2.03 Total: -82.29 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.04 Total: -32.13 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -71.75 4.55 -67.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251440754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.878 kcal (2) G-P(sol) polarization free energy of solvation -71.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds