Wall clock time and date at job start Mon Mar 30 2020 04:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.50699 * 109.47352 * 269.99857 * 3 2 1 5 5 H 1.08000 * 119.99828 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00146 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99841 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47166 * 60.00152 * 8 6 4 10 10 H 1.48506 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47159 * 299.99829 * 8 6 4 12 12 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00360 * 179.72577 * 12 2 1 14 14 C 1.50706 * 120.00081 * 359.97438 * 12 2 1 15 15 H 1.08998 * 115.57077 * 34.14350 * 14 12 2 16 16 C 1.52303 * 117.53922 * 179.97438 * 14 12 2 17 17 H 1.08996 * 115.91556 * 1.59317 * 16 14 12 18 18 C 1.52076 * 119.83910 * 217.19527 * 16 14 12 19 19 C 1.52877 * 110.51174 * 310.44949 * 18 16 14 20 20 C 1.53301 * 108.59032 * 305.10888 * 19 18 16 21 21 C 1.52876 * 108.58067 * 74.44752 * 20 19 18 22 22 C 1.52300 * 60.58548 * 107.41170 * 16 14 12 23 23 H 1.09006 * 117.29849 * 252.89887 * 22 16 14 24 24 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 25 25 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 26 26 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 27 27 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 28 28 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 29 29 H 0.97007 * 120.00044 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.26770 * 70.71596 * 18 16 14 31 31 H 1.09000 * 109.26540 * 190.21858 * 18 16 14 32 32 H 1.09001 * 109.61435 * 64.84204 * 19 18 16 33 33 H 1.08997 * 109.61534 * 185.19790 * 19 18 16 34 34 H 1.09003 * 109.61502 * 194.16748 * 20 19 18 35 35 H 1.08992 * 109.61863 * 314.71505 * 20 19 18 36 36 H 1.09005 * 109.35768 * 65.68320 * 21 20 19 37 37 H 1.09004 * 109.35614 * 185.40376 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6730 8 14 3.4366 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1336 10 1 4.1792 4.7038 -3.4337 11 1 4.2395 2.3832 -4.1342 12 6 2.1388 -1.1671 -0.0005 13 8 3.3516 -1.1672 -0.0055 14 6 1.3854 -2.4723 -0.0005 15 1 0.4452 -2.4728 -0.5520 16 6 2.2029 -3.7574 -0.0017 17 1 3.2854 -3.6333 0.0247 18 6 1.7218 -4.9595 -0.7994 19 6 0.2539 -5.2545 -0.4907 20 6 0.0976 -5.4241 1.0248 21 6 0.1802 -4.0454 1.6803 22 6 1.4674 -3.3399 1.2649 23 1 2.0695 -2.9607 2.0907 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1498 1.1385 0.5139 29 1 4.0293 4.4445 -0.8502 30 1 1.8309 -4.7518 -1.8638 31 1 2.3254 -5.8289 -0.5388 32 1 -0.3656 -4.4251 -0.8320 33 1 -0.0496 -6.1706 -0.9974 34 1 -0.8694 -5.8765 1.2447 35 1 0.8970 -6.0592 1.4064 36 1 -0.6755 -3.4458 1.3696 37 1 0.1669 -4.1594 2.7643 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252630830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:34 Heat of formation + Delta-G solvation = -29.350331 kcal Electronic energy + Delta-G solvation = -17128.572842 eV Core-core repulsion = 14484.816248 eV Total energy + Delta-G solvation = -2643.756594 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.09611 -37.93108 -34.75414 -33.03023 -32.47192 -30.80199 -28.03143 -25.99124 -25.02337 -23.12279 -22.53061 -21.14634 -18.82741 -17.86850 -16.79500 -16.45318 -15.38474 -15.04994 -14.57435 -14.31673 -14.01038 -13.96867 -13.35777 -12.88805 -12.38223 -12.24340 -12.17779 -12.03733 -11.86224 -11.50486 -11.23934 -11.10389 -10.91180 -10.83180 -10.53564 -10.30088 -10.13244 -9.71389 -9.60657 -9.56962 -8.79249 -8.40717 -7.58256 -6.01530 -4.06331 3.20338 3.33714 3.37848 3.41698 3.94566 4.10710 4.46893 4.71762 4.75954 4.77488 5.03429 5.11885 5.19176 5.31885 5.35398 5.43376 5.51716 5.57197 5.65503 5.79450 5.88494 5.92542 5.97786 6.03770 6.06977 6.21242 6.23251 6.27179 6.34903 6.48763 7.10593 7.47402 7.59357 7.95121 8.26650 8.48857 8.93481 9.17350 9.58753 11.06498 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041310 B = 0.005587 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.645271 B = 5010.279719 C = 5189.896442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.599 5.599 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.532 3.468 13 O -0.545 6.545 14 C -0.182 4.182 15 H 0.118 0.882 16 C -0.111 4.111 17 H 0.111 0.889 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.118 4.118 21 C -0.089 4.089 22 C -0.123 4.123 23 H 0.104 0.896 24 H 0.043 0.957 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.502 -15.902 2.958 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.330 5.330 3 C 0.126 3.874 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.318 3.682 13 O -0.423 6.423 14 C -0.203 4.203 15 H 0.136 0.864 16 C -0.130 4.130 17 H 0.129 0.871 18 C -0.125 4.125 19 C -0.161 4.161 20 C -0.155 4.155 21 C -0.127 4.127 22 C -0.142 4.142 23 H 0.122 0.878 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.766 -15.670 3.003 18.205 hybrid contribution 0.094 0.617 -1.034 1.208 sum -8.672 -15.053 1.969 17.484 Atomic orbital electron populations 1.21621 0.81523 1.02303 1.00327 1.48056 1.06153 1.07636 1.71189 1.19283 0.92531 0.78128 0.97470 1.21404 1.36530 1.06235 0.92303 0.92558 1.24936 0.95354 0.96375 0.97447 1.69929 1.38431 1.14347 1.30780 0.86553 0.78348 0.77803 0.84676 1.20255 1.21148 1.20185 1.19454 0.87387 0.84221 0.77116 1.90646 1.13901 1.87124 1.50611 1.22588 1.02215 0.91220 1.04325 0.86415 1.21879 0.99353 0.93556 0.98214 0.87058 1.20864 0.95835 0.96235 0.99547 1.21631 0.96820 1.01442 0.96200 1.21556 1.01439 0.96977 0.95539 1.21053 0.95685 0.95718 1.00214 1.22270 0.99368 1.01160 0.91417 0.87785 0.93839 0.90987 0.92480 0.95021 0.93917 0.92682 0.91387 0.91322 0.91831 0.91912 0.92059 0.91682 0.91509 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.45 10.26 59.84 0.61 2.06 16 2 N -0.60 -13.36 2.86 -182.95 -0.52 -13.89 16 3 C 0.25 6.65 5.16 -5.19 -0.03 6.63 16 4 C -0.53 -15.36 9.39 -34.44 -0.32 -15.69 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 8 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 C 0.53 11.70 7.46 -10.98 -0.08 11.62 16 13 O -0.54 -14.40 15.77 5.56 0.09 -14.31 16 14 C -0.18 -2.93 4.42 -91.79 -0.41 -3.33 16 15 H 0.12 1.67 5.55 -51.93 -0.29 1.39 16 16 C -0.11 -1.60 5.58 -91.80 -0.51 -2.11 16 17 H 0.11 1.85 7.55 -51.93 -0.39 1.46 16 18 C -0.09 -0.98 5.93 -27.26 -0.16 -1.14 16 19 C -0.12 -1.17 5.70 -26.64 -0.15 -1.32 16 20 C -0.12 -1.05 5.93 -26.64 -0.16 -1.21 16 21 C -0.09 -0.92 5.82 -27.02 -0.16 -1.07 16 22 C -0.12 -1.67 5.90 -90.87 -0.54 -2.20 16 23 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 26 H 0.06 0.80 5.99 -51.93 -0.31 0.49 16 27 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.04 1.30 7.43 -51.93 -0.39 0.92 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.63 7.11 -51.93 -0.37 0.26 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.58 8.04 -51.93 -0.42 0.16 16 36 H 0.07 0.66 8.06 -51.93 -0.42 0.24 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 298.78 15.07 4.50 4.50 Total: -1.00 -33.24 298.78 -8.14 -41.38 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.92 Total: -2.43 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.00 Total: -6.10 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.21 Total: -40.29 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.09 Total: -14.31 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.24 -8.14 -41.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252630830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.026 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds