Wall clock time and date at job start Mon Mar 30 2020 04:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46506 * 119.99800 * 2 1 4 4 C 1.50699 * 109.47352 * 269.99857 * 3 2 1 5 5 H 1.08000 * 119.99828 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00146 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99841 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 120.00215 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47166 * 60.00152 * 8 6 4 10 10 H 1.48506 * 109.47069 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47159 * 299.99829 * 8 6 4 12 12 C 1.34773 * 120.00231 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00360 * 179.72577 * 12 2 1 14 14 C 1.50706 * 120.00081 * 359.97438 * 12 2 1 15 15 H 1.08998 * 115.57077 * 34.14350 * 14 12 2 16 16 C 1.52303 * 117.53922 * 179.97438 * 14 12 2 17 17 H 1.08996 * 115.91556 * 1.59317 * 16 14 12 18 18 C 1.52076 * 119.83910 * 217.19527 * 16 14 12 19 19 C 1.52877 * 110.51174 * 310.44949 * 18 16 14 20 20 C 1.53301 * 108.59032 * 305.10888 * 19 18 16 21 21 C 1.52876 * 108.58067 * 74.44752 * 20 19 18 22 22 C 1.52300 * 60.58548 * 107.41170 * 16 14 12 23 23 H 1.09006 * 117.29849 * 252.89887 * 22 16 14 24 24 H 1.09001 * 109.47443 * 269.99328 * 1 2 3 25 25 H 1.08999 * 109.47479 * 30.00306 * 1 2 3 26 26 H 1.09006 * 109.47080 * 149.99714 * 1 2 3 27 27 H 1.08995 * 109.47161 * 30.00561 * 3 2 1 28 28 H 1.09002 * 109.46900 * 149.99872 * 3 2 1 29 29 H 0.97007 * 120.00044 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.26770 * 70.71596 * 18 16 14 31 31 H 1.09000 * 109.26540 * 190.21858 * 18 16 14 32 32 H 1.09001 * 109.61435 * 64.84204 * 19 18 16 33 33 H 1.08997 * 109.61534 * 185.19790 * 19 18 16 34 34 H 1.09003 * 109.61502 * 194.16748 * 20 19 18 35 35 H 1.08992 * 109.61863 * 314.71505 * 20 19 18 36 36 H 1.09005 * 109.35768 * 65.68320 * 21 20 19 37 37 H 1.09004 * 109.35614 * 185.40376 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0974 1.0963 -2.2417 6 6 3.1259 2.8780 -1.6727 7 7 3.5531 3.6182 -0.6730 8 14 3.4366 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1336 10 1 4.1792 4.7038 -3.4337 11 1 4.2395 2.3832 -4.1342 12 6 2.1388 -1.1671 -0.0005 13 8 3.3516 -1.1672 -0.0055 14 6 1.3854 -2.4723 -0.0005 15 1 0.4452 -2.4728 -0.5520 16 6 2.2029 -3.7574 -0.0017 17 1 3.2854 -3.6333 0.0247 18 6 1.7218 -4.9595 -0.7994 19 6 0.2539 -5.2545 -0.4907 20 6 0.0976 -5.4241 1.0248 21 6 0.1802 -4.0454 1.6803 22 6 1.4674 -3.3399 1.2649 23 1 2.0695 -2.9607 2.0907 24 1 -0.3634 -0.0001 1.0277 25 1 -0.3634 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5139 27 1 1.6084 2.0284 0.5139 28 1 3.1498 1.1385 0.5139 29 1 4.0293 4.4445 -0.8502 30 1 1.8309 -4.7518 -1.8638 31 1 2.3254 -5.8289 -0.5388 32 1 -0.3656 -4.4251 -0.8320 33 1 -0.0496 -6.1706 -0.9974 34 1 -0.8694 -5.8765 1.2447 35 1 0.8970 -6.0592 1.4064 36 1 -0.6755 -3.4458 1.3696 37 1 0.1669 -4.1594 2.7643 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252630830.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:33 Heat of formation + Delta-G solvation = -49.858696 kcal Electronic energy + Delta-G solvation = -17129.462152 eV Core-core repulsion = 14484.816248 eV Total energy + Delta-G solvation = -2644.645904 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.42688 -39.40014 -36.62311 -34.76987 -33.91246 -31.65301 -30.05289 -27.48422 -26.55892 -24.73169 -23.39257 -22.57473 -20.15928 -19.04668 -18.72405 -18.26165 -17.19060 -16.44835 -16.13137 -15.96227 -14.93499 -14.83699 -14.76375 -14.32129 -14.16549 -13.80549 -13.49996 -13.24102 -13.19290 -13.08605 -12.80100 -12.62031 -12.56715 -12.22296 -11.95209 -11.78353 -11.67192 -11.13933 -10.89983 -10.68849 -10.61602 -10.46423 -9.45268 -8.25304 -6.41123 1.34190 1.39247 1.46539 1.63889 2.27605 2.41514 2.83551 3.03718 3.58918 3.74866 3.78790 4.01319 4.05213 4.22252 4.32881 4.40957 4.50133 4.65989 4.71011 4.71999 4.85886 4.87883 4.96710 5.04349 5.09039 5.15267 5.19372 5.29181 5.36704 5.38864 5.48498 5.52412 5.58592 5.81164 6.02310 6.65620 6.75620 7.24547 7.45465 8.81795 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041310 B = 0.005587 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.645271 B = 5010.279719 C = 5189.896442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.607 5.607 3 C 0.258 3.742 4 C -0.546 4.546 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.971 3.029 9 H -0.258 1.258 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.519 3.481 13 O -0.605 6.605 14 C -0.189 4.189 15 H 0.146 0.854 16 C -0.112 4.112 17 H 0.077 0.923 18 C -0.084 4.084 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.086 4.086 22 C -0.103 4.103 23 H 0.084 0.916 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.025 0.975 28 H -0.006 1.006 29 H 0.268 0.732 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.986 -17.626 2.061 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.337 5.337 3 C 0.137 3.863 4 C -0.585 4.585 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.794 3.206 9 H -0.183 1.183 10 H -0.200 1.200 11 H -0.204 1.204 12 C 0.309 3.691 13 O -0.488 6.488 14 C -0.209 4.209 15 H 0.163 0.837 16 C -0.131 4.131 17 H 0.095 0.905 18 C -0.121 4.121 19 C -0.158 4.158 20 C -0.152 4.152 21 C -0.123 4.123 22 C -0.122 4.122 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.043 0.957 28 H 0.012 0.988 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.084 0.916 36 H 0.098 0.902 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.310 -17.408 2.116 20.867 hybrid contribution 0.915 1.156 -0.679 1.623 sum -10.395 -16.252 1.437 19.345 Atomic orbital electron populations 1.21919 0.77829 1.03779 1.02510 1.48110 1.08482 1.06184 1.70920 1.18771 0.90980 0.80382 0.96182 1.21656 1.37240 1.06695 0.92876 0.93009 1.25901 0.94707 0.96284 1.02291 1.70052 1.38778 1.14779 1.33219 0.85427 0.78942 0.77383 0.78808 1.18251 1.20042 1.20423 1.20529 0.87129 0.85956 0.75503 1.90603 1.16785 1.88165 1.53212 1.22491 1.02770 0.88280 1.07374 0.83667 1.21954 0.97604 0.93973 0.99581 0.90474 1.20899 0.97741 0.94838 0.98655 1.21651 0.94886 1.02431 0.96856 1.21564 1.02782 0.95972 0.94848 1.21126 0.93581 0.96401 1.01233 1.22399 1.00544 0.99381 0.89886 0.89743 0.91231 0.91507 0.88983 0.95700 0.98754 0.92286 0.91694 0.90045 0.91819 0.89870 0.89737 0.91642 0.90236 0.90220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.61 10.26 127.77 1.31 3.92 16 2 N -0.61 -27.67 2.86 -851.13 -2.43 -30.11 16 3 C 0.26 14.72 5.16 85.63 0.44 15.16 16 4 C -0.55 -32.84 9.39 25.60 0.24 -32.60 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 6 C 0.01 0.42 5.46 84.65 0.46 0.89 16 7 N -0.93 -57.68 13.29 21.44 0.28 -57.40 16 8 Si 0.97 45.98 29.54 68.60 2.03 48.00 16 9 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 12 C 0.52 23.61 7.46 87.66 0.65 24.26 16 13 O -0.61 -34.12 15.77 -3.04 -0.05 -34.17 16 14 C -0.19 -5.90 4.42 -11.55 -0.05 -5.95 16 15 H 0.15 3.70 5.55 -2.39 -0.01 3.68 16 16 C -0.11 -3.19 5.58 -11.56 -0.06 -3.25 16 17 H 0.08 2.72 7.55 -2.39 -0.02 2.70 16 18 C -0.08 -1.70 5.93 30.25 0.18 -1.52 16 19 C -0.12 -1.80 5.70 30.65 0.17 -1.63 16 20 C -0.11 -1.56 5.93 30.65 0.18 -1.37 16 21 C -0.09 -1.46 5.82 30.41 0.18 -1.28 16 22 C -0.10 -2.66 5.90 -10.95 -0.06 -2.73 16 23 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 24 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.07 2.20 8.07 -2.39 -0.02 2.19 16 26 H 0.09 2.28 5.99 -2.38 -0.01 2.27 16 27 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 28 H -0.01 -0.37 7.43 -2.39 -0.02 -0.39 16 29 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 0.97 7.11 -2.39 -0.02 0.95 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 0.91 8.04 -2.39 -0.02 0.89 16 36 H 0.08 1.21 8.06 -2.38 -0.02 1.19 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -76.54 298.78 4.51 -72.03 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: 1.03 Total: 7.75 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 3.64 Total: -6.10 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -2.15 Total: -87.50 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.05 Total: -34.17 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -76.54 4.51 -72.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252630830.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.168 kcal (2) G-P(sol) polarization free energy of solvation -76.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds