Wall clock time and date at job start Mon Mar 30 2020 03:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47030 * 2 1 4 4 C 1.33351 * 117.94696 * 96.65391 * 3 2 1 5 5 O 1.21284 * 118.24556 * 357.75422 * 4 3 2 6 6 C 1.50180 * 123.50963 * 177.77783 * 4 3 2 7 7 C 1.53072 * 109.88916 * 17.57829 * 6 4 3 8 8 C 1.53344 * 108.42928 * 311.10205 * 7 6 4 9 9 H 1.09001 * 109.60330 * 307.61473 * 8 7 6 10 10 C 1.50696 * 109.60468 * 187.28332 * 8 7 6 11 11 H 1.07998 * 120.00222 * 244.69834 * 10 8 7 12 12 C 1.37883 * 119.99686 * 64.70183 * 10 8 7 13 13 N 1.31510 * 119.99911 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99802 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47288 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47165 * 119.99634 * 14 12 10 17 17 H 1.48503 * 109.46821 * 239.99398 * 14 12 10 18 18 C 1.45755 * 117.94424 * 276.65190 * 3 2 1 19 19 H 1.09002 * 109.29761 * 78.76636 * 18 3 2 20 20 C 1.53000 * 109.30375 * 319.38915 * 18 3 2 21 21 C 1.53002 * 117.49706 * 240.74085 * 20 18 3 22 22 C 1.52992 * 117.49698 * 172.08251 * 20 18 3 23 23 H 1.09002 * 109.47638 * 59.99868 * 1 2 3 24 24 H 1.09000 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47117 * 300.00246 * 1 2 3 26 26 H 1.09002 * 109.46995 * 240.00497 * 2 1 3 27 27 H 1.09001 * 109.47570 * 119.99580 * 2 1 3 28 28 H 1.09002 * 109.40122 * 257.45661 * 6 4 3 29 29 H 1.08998 * 109.33176 * 137.66224 * 6 4 3 30 30 H 1.08999 * 109.67274 * 191.36264 * 7 6 4 31 31 H 1.09003 * 109.69889 * 70.85313 * 7 6 4 32 32 H 0.97001 * 119.99986 * 179.97438 * 13 12 10 33 33 H 1.08996 * 115.54954 * 26.40676 * 20 18 3 34 34 H 1.09003 * 117.49861 * 0.02562 * 21 20 18 35 35 H 1.09004 * 117.49677 * 145.01773 * 21 20 18 36 36 H 1.09003 * 117.49896 * 214.97327 * 22 20 18 37 37 H 1.09000 * 117.50648 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3553 1.9250 1.1701 5 8 2.2014 1.2644 2.1755 6 6 2.9146 3.3118 1.3095 7 6 2.6284 4.1187 0.0406 8 6 3.0436 3.2779 -1.1726 9 1 4.0700 2.9338 -1.0451 10 6 2.9413 4.1110 -2.4242 11 1 2.2278 3.8481 -3.1911 12 6 3.7587 5.2089 -2.5901 13 7 4.6272 5.5293 -1.6560 14 14 3.6314 6.2422 -4.1412 15 1 2.5846 5.6754 -5.0290 16 1 3.2718 7.6367 -3.7788 17 1 4.9369 6.2355 -4.8488 18 6 2.1053 2.0750 -1.2789 19 1 1.1126 2.4172 -1.5714 20 6 2.6368 1.1113 -2.3419 21 6 3.9516 1.4776 -3.0333 22 6 2.6288 1.5886 -3.7954 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9918 3.2536 1.4662 29 1 2.4503 3.8039 2.1640 30 1 3.2016 5.0457 0.0582 31 1 1.5640 4.3465 -0.0177 32 1 5.2025 6.3015 -1.7729 33 1 2.4423 0.0548 -2.1579 34 1 4.4381 2.4049 -2.7306 35 1 4.6218 0.6619 -3.3046 36 1 2.4293 0.8459 -4.5679 37 1 2.2444 2.5890 -3.9946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259693281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:14 Heat of formation + Delta-G solvation = -6.499446 kcal Electronic energy + Delta-G solvation = -18154.286876 eV Core-core repulsion = 15511.521170 eV Total energy + Delta-G solvation = -2642.765706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.10590 -37.51596 -34.61298 -34.40126 -32.15128 -29.70073 -28.63397 -25.61895 -23.62873 -23.14012 -21.82047 -20.55475 -19.72018 -17.31388 -16.94237 -16.12004 -15.59038 -14.92880 -14.51969 -14.24677 -13.72872 -13.35427 -13.08537 -12.99806 -12.71317 -11.96937 -11.66820 -11.64778 -11.28929 -11.25790 -10.92692 -10.71892 -10.59776 -10.52540 -10.30177 -9.72118 -9.63390 -9.45668 -9.27962 -8.90841 -8.65360 -8.46894 -8.00463 -6.15114 -4.19666 3.21782 3.31518 3.32063 3.32902 3.67736 4.32834 4.59661 5.16621 5.22624 5.32520 5.54313 5.60563 5.67430 5.74173 5.80499 5.90518 6.03120 6.05649 6.16473 6.18135 6.31632 6.35802 6.40520 6.49394 6.53354 6.69309 6.89791 6.95982 7.02552 7.26621 7.30566 7.59509 7.75748 7.86311 8.07279 8.31064 8.79979 8.86564 9.43830 10.92129 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.009761 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.513435 B = 2867.968017 C = 3511.029323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.091 3.909 3 N -0.590 5.590 4 C 0.521 3.479 5 O -0.584 6.584 6 C -0.134 4.134 7 C -0.115 4.115 8 C 0.043 3.957 9 H 0.046 0.954 10 C -0.512 4.512 11 H 0.069 0.931 12 C 0.066 3.934 13 N -0.885 5.885 14 Si 0.888 3.112 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.284 1.284 18 C 0.176 3.824 19 H 0.064 0.936 20 C -0.172 4.172 21 C -0.171 4.171 22 C -0.177 4.177 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.040 0.960 32 H 0.262 0.738 33 H 0.095 0.905 34 H 0.133 0.867 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.876 -6.127 -1.220 7.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.032 4.032 3 N -0.321 5.321 4 C 0.311 3.689 5 O -0.466 6.466 6 C -0.173 4.173 7 C -0.153 4.153 8 C 0.024 3.976 9 H 0.063 0.937 10 C -0.550 4.550 11 H 0.087 0.913 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C 0.074 3.926 19 H 0.082 0.918 20 C -0.190 4.190 21 C -0.208 4.208 22 C -0.214 4.214 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.115 0.885 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.151 0.849 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.807 -6.303 -0.671 7.394 hybrid contribution -0.031 0.566 -0.910 1.072 sum -3.838 -5.738 -1.581 7.082 Atomic orbital electron populations 1.22051 0.96459 1.01337 1.02135 1.21530 0.94146 0.84610 1.02903 1.47501 1.63215 1.13797 1.07579 1.20449 0.76586 0.89533 0.82306 1.90595 1.56659 1.63204 1.36151 1.21712 1.02050 0.92011 1.01564 1.21790 1.00066 1.01377 0.92104 1.19133 0.94483 0.89456 0.94505 0.93654 1.21174 1.20557 1.10679 1.02616 0.91276 1.24907 0.95171 0.97227 0.96315 1.69908 1.22134 1.27224 1.32985 0.86592 0.78016 0.80344 0.83452 1.19654 1.21109 1.21027 1.20780 0.99911 0.92348 0.79610 0.91831 1.22561 1.03982 0.98341 0.94162 1.23298 0.90314 1.04011 1.03144 1.23242 1.02727 1.03165 0.92281 0.92563 0.92354 0.92652 0.90435 0.90069 0.89136 0.90207 0.88472 0.94157 0.92836 0.88765 0.84897 0.91303 0.91023 0.86408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.20 37.15 0.38 -1.92 16 2 C 0.09 1.47 5.77 -4.04 -0.02 1.45 16 3 N -0.59 -11.15 2.71 -167.32 -0.45 -11.60 16 4 C 0.52 10.80 7.47 -11.87 -0.09 10.71 16 5 O -0.58 -13.27 16.11 5.55 0.09 -13.18 16 6 C -0.13 -2.65 6.03 -28.10 -0.17 -2.82 16 7 C -0.12 -2.48 5.20 -26.52 -0.14 -2.62 16 8 C 0.04 0.94 1.04 -91.63 -0.09 0.84 16 9 H 0.05 1.11 6.68 -51.93 -0.35 0.76 16 10 C -0.51 -11.95 5.69 -34.44 -0.20 -12.14 16 11 H 0.07 1.59 4.95 -52.49 -0.26 1.33 16 12 C 0.07 1.62 5.29 -17.82 -0.09 1.53 16 13 N -0.88 -22.81 11.68 55.43 0.65 -22.16 16 14 Si 0.89 19.47 29.54 -169.99 -5.02 14.45 16 15 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 C 0.18 3.38 2.58 -68.37 -0.18 3.21 16 19 H 0.06 1.26 8.11 -51.93 -0.42 0.84 16 20 C -0.17 -3.01 5.61 -90.62 -0.51 -3.51 16 21 C -0.17 -3.14 9.23 -26.69 -0.25 -3.38 16 22 C -0.18 -3.04 9.69 -26.70 -0.26 -3.30 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.12 5.18 -51.93 -0.27 0.85 16 27 H 0.08 1.39 6.99 -51.93 -0.36 1.02 16 28 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.10 2.31 6.36 -51.93 -0.33 1.98 16 31 H 0.04 0.85 8.13 -51.93 -0.42 0.43 16 32 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.09 1.50 5.33 -51.93 -0.28 1.22 16 34 H 0.13 2.87 4.92 -51.93 -0.26 2.62 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.12 2.22 5.01 -51.93 -0.26 1.96 16 LS Contribution 282.12 15.07 4.25 4.25 Total: -1.00 -26.10 282.12 -7.40 -33.50 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -5.30 Total: 6.71 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -1.62 Total: -11.96 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 0.19 Total: -33.76 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.10 -7.40 -33.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259693281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.996 kcal (2) G-P(sol) polarization free energy of solvation -26.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds