Wall clock time and date at job start Mon Mar 30 2020 03:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47030 * 2 1 4 4 C 1.33351 * 117.94696 * 96.65391 * 3 2 1 5 5 O 1.21284 * 118.24556 * 357.75422 * 4 3 2 6 6 C 1.50180 * 123.50963 * 177.77783 * 4 3 2 7 7 C 1.53072 * 109.88916 * 17.57829 * 6 4 3 8 8 C 1.53344 * 108.42928 * 311.10205 * 7 6 4 9 9 H 1.09001 * 109.60330 * 307.61473 * 8 7 6 10 10 C 1.50696 * 109.60468 * 187.28332 * 8 7 6 11 11 H 1.07998 * 120.00222 * 244.69834 * 10 8 7 12 12 C 1.37883 * 119.99686 * 64.70183 * 10 8 7 13 13 N 1.31510 * 119.99911 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99802 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47288 * 359.97438 * 14 12 10 16 16 H 1.48503 * 109.47165 * 119.99634 * 14 12 10 17 17 H 1.48503 * 109.46821 * 239.99398 * 14 12 10 18 18 C 1.45755 * 117.94424 * 276.65190 * 3 2 1 19 19 H 1.09002 * 109.29761 * 78.76636 * 18 3 2 20 20 C 1.53000 * 109.30375 * 319.38915 * 18 3 2 21 21 C 1.53002 * 117.49706 * 240.74085 * 20 18 3 22 22 C 1.52992 * 117.49698 * 172.08251 * 20 18 3 23 23 H 1.09002 * 109.47638 * 59.99868 * 1 2 3 24 24 H 1.09000 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47117 * 300.00246 * 1 2 3 26 26 H 1.09002 * 109.46995 * 240.00497 * 2 1 3 27 27 H 1.09001 * 109.47570 * 119.99580 * 2 1 3 28 28 H 1.09002 * 109.40122 * 257.45661 * 6 4 3 29 29 H 1.08998 * 109.33176 * 137.66224 * 6 4 3 30 30 H 1.08999 * 109.67274 * 191.36264 * 7 6 4 31 31 H 1.09003 * 109.69889 * 70.85313 * 7 6 4 32 32 H 0.97001 * 119.99986 * 179.97438 * 13 12 10 33 33 H 1.08996 * 115.54954 * 26.40676 * 20 18 3 34 34 H 1.09003 * 117.49861 * 0.02562 * 21 20 18 35 35 H 1.09004 * 117.49677 * 145.01773 * 21 20 18 36 36 H 1.09003 * 117.49896 * 214.97327 * 22 20 18 37 37 H 1.09000 * 117.50648 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3553 1.9250 1.1701 5 8 2.2014 1.2644 2.1755 6 6 2.9146 3.3118 1.3095 7 6 2.6284 4.1187 0.0406 8 6 3.0436 3.2779 -1.1726 9 1 4.0700 2.9338 -1.0451 10 6 2.9413 4.1110 -2.4242 11 1 2.2278 3.8481 -3.1911 12 6 3.7587 5.2089 -2.5901 13 7 4.6272 5.5293 -1.6560 14 14 3.6314 6.2422 -4.1412 15 1 2.5846 5.6754 -5.0290 16 1 3.2718 7.6367 -3.7788 17 1 4.9369 6.2355 -4.8488 18 6 2.1053 2.0750 -1.2789 19 1 1.1126 2.4172 -1.5714 20 6 2.6368 1.1113 -2.3419 21 6 3.9516 1.4776 -3.0333 22 6 2.6288 1.5886 -3.7954 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.9918 3.2536 1.4662 29 1 2.4503 3.8039 2.1640 30 1 3.2016 5.0457 0.0582 31 1 1.5640 4.3465 -0.0177 32 1 5.2025 6.3015 -1.7729 33 1 2.4423 0.0548 -2.1579 34 1 4.4381 2.4049 -2.7306 35 1 4.6218 0.6619 -3.3046 36 1 2.4293 0.8459 -4.5679 37 1 2.2444 2.5890 -3.9946 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259693281.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:14 Heat of formation + Delta-G solvation = -19.690341 kcal Electronic energy + Delta-G solvation = -18154.858876 eV Core-core repulsion = 15511.521170 eV Total energy + Delta-G solvation = -2643.337706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.69455 -39.09833 -36.11307 -36.04390 -33.92579 -31.08964 -30.32845 -27.31635 -25.23545 -24.62369 -23.26822 -22.17006 -21.21958 -18.94161 -18.62441 -17.69029 -17.23814 -16.53116 -16.27184 -15.78369 -15.26813 -14.76066 -14.62750 -14.50571 -14.39296 -13.34025 -13.24171 -13.09991 -12.96394 -12.79823 -12.64756 -12.38220 -12.21839 -12.03347 -11.79113 -11.39580 -11.31842 -10.89416 -10.77732 -10.66413 -10.37873 -10.26273 -9.54359 -8.04079 -6.11271 1.45482 1.51252 1.58043 1.67788 2.16905 2.50822 3.17218 3.28074 3.76367 3.91990 4.13933 4.21565 4.31712 4.35134 4.40632 4.46817 4.52970 4.60840 4.66459 4.84536 4.87393 4.93181 5.02007 5.06339 5.19696 5.24885 5.30065 5.35008 5.47811 5.71853 5.75546 5.82817 5.94859 6.02617 6.30505 6.63451 6.95870 7.23709 7.53978 9.03157 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027457 B = 0.009761 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.513435 B = 2867.968017 C = 3511.029323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.086 3.914 3 N -0.588 5.588 4 C 0.516 3.484 5 O -0.607 6.607 6 C -0.128 4.128 7 C -0.109 4.109 8 C 0.045 3.955 9 H 0.017 0.983 10 C -0.505 4.505 11 H 0.076 0.924 12 C 0.022 3.978 13 N -0.915 5.915 14 Si 0.939 3.061 15 H -0.261 1.261 16 H -0.291 1.291 17 H -0.289 1.289 18 C 0.181 3.819 19 H 0.064 0.936 20 C -0.167 4.167 21 C -0.183 4.183 22 C -0.164 4.164 23 H 0.060 0.940 24 H 0.088 0.912 25 H 0.036 0.964 26 H 0.101 0.899 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.258 0.742 33 H 0.121 0.879 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.113 -7.701 -2.479 9.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.036 4.036 3 N -0.317 5.317 4 C 0.306 3.694 5 O -0.491 6.491 6 C -0.168 4.168 7 C -0.147 4.147 8 C 0.027 3.973 9 H 0.035 0.965 10 C -0.543 4.543 11 H 0.094 0.906 12 C -0.177 4.177 13 N -0.555 5.555 14 Si 0.767 3.233 15 H -0.185 1.185 16 H -0.218 1.218 17 H -0.216 1.216 18 C 0.078 3.922 19 H 0.082 0.918 20 C -0.186 4.186 21 C -0.220 4.220 22 C -0.201 4.201 23 H 0.079 0.921 24 H 0.106 0.894 25 H 0.055 0.945 26 H 0.118 0.882 27 H 0.089 0.911 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.138 0.862 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.063 -7.890 -1.958 9.578 hybrid contribution 0.363 1.035 -0.518 1.213 sum -4.701 -6.855 -2.475 8.673 Atomic orbital electron populations 1.21994 0.94721 1.03123 1.01389 1.21773 0.95554 0.82771 1.03493 1.47546 1.62433 1.14918 1.06799 1.20480 0.76715 0.89546 0.82657 1.90583 1.57881 1.63709 1.36891 1.21638 1.02023 0.91912 1.01207 1.21631 0.99478 1.00520 0.93065 1.19009 0.93659 0.90545 0.94122 0.96480 1.21441 1.19689 1.10138 1.03032 0.90615 1.25509 0.95320 0.98507 0.98369 1.70026 1.23197 1.27713 1.34540 0.85781 0.77798 0.78741 0.81009 1.18483 1.21751 1.21569 1.20616 0.99117 0.92038 0.80383 0.91806 1.22581 1.03115 0.99094 0.93762 1.23161 0.91093 1.03211 1.04500 1.23217 1.01060 1.03077 0.92739 0.92129 0.89352 0.94503 0.88164 0.91075 0.89482 0.88784 0.90992 0.94054 0.93291 0.86190 0.88653 0.89206 0.87799 0.88268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 10.20 71.98 0.73 -3.19 16 2 C 0.09 2.55 5.77 86.38 0.50 3.04 16 3 N -0.59 -21.32 2.71 -802.48 -2.18 -23.50 16 4 C 0.52 21.09 7.47 87.72 0.66 21.75 16 5 O -0.61 -27.21 16.11 -3.04 -0.05 -27.25 16 6 C -0.13 -5.11 6.03 29.71 0.18 -4.94 16 7 C -0.11 -4.74 5.20 30.73 0.16 -4.58 16 8 C 0.05 2.00 1.04 -11.45 -0.01 1.98 16 9 H 0.02 0.86 6.68 -2.39 -0.02 0.84 16 10 C -0.50 -23.51 5.69 25.60 0.15 -23.37 16 11 H 0.08 3.40 4.95 -2.91 -0.01 3.38 16 12 C 0.02 1.09 5.29 84.66 0.45 1.54 16 13 N -0.92 -48.44 11.68 21.45 0.25 -48.19 16 14 Si 0.94 40.05 29.54 68.60 2.03 42.07 16 15 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 16 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 17 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 18 C 0.18 6.69 2.58 45.11 0.12 6.81 16 19 H 0.06 2.40 8.11 -2.39 -0.02 2.38 16 20 C -0.17 -5.39 5.61 -10.80 -0.06 -5.45 16 21 C -0.18 -6.39 9.23 30.62 0.28 -6.11 16 22 C -0.16 -5.14 9.69 30.61 0.30 -4.84 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.48 16 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.10 2.50 5.18 -2.39 -0.01 2.49 16 27 H 0.07 2.29 6.99 -2.39 -0.02 2.27 16 28 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.07 3.53 6.36 -2.39 -0.02 3.51 16 31 H 0.04 1.75 8.13 -2.39 -0.02 1.73 16 32 H 0.26 13.28 8.31 -92.71 -0.77 12.51 16 33 H 0.12 3.27 5.33 -2.39 -0.01 3.26 16 34 H 0.10 4.15 4.92 -2.39 -0.01 4.13 16 35 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.10 3.52 5.01 -2.39 -0.01 3.51 16 Total: -1.00 -55.83 282.12 4.56 -51.27 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 1.06 Total: 22.96 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 3.44 Total: -17.36 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -1.93 Total: -71.69 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.03 Total: 42.07 kcal Total: -55.83 4.56 -51.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259693281.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.584 kcal (2) G-P(sol) polarization free energy of solvation -55.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds