Wall clock time and date at job start Mon Mar 30 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34415 * 124.34995 * 2 1 4 4 O 1.21281 * 124.94577 * 359.62726 * 3 2 1 5 5 C 1.51285 * 110.11358 * 179.59304 * 3 2 1 6 6 C 1.54623 * 104.19688 * 343.74514 * 5 3 2 7 7 H 1.08993 * 110.97505 * 266.64462 * 6 5 3 8 8 C 1.50706 * 110.96910 * 142.91560 * 6 5 3 9 9 H 1.07995 * 120.00167 * 244.21638 * 8 6 5 10 10 C 1.37879 * 119.99394 * 64.49336 * 8 6 5 11 11 N 1.31514 * 120.00338 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99424 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47487 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47233 * 120.00158 * 12 10 8 15 15 H 1.48508 * 109.46883 * 239.99963 * 12 10 8 16 16 C 1.46820 * 124.33240 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.24246 * 78.01672 * 16 2 1 18 18 C 1.53006 * 110.28309 * 315.99646 * 16 2 1 19 19 C 1.54265 * 110.03407 * 181.13698 * 18 16 2 20 20 C 1.54887 * 104.19389 * 217.10476 * 19 18 16 21 21 C 1.54893 * 102.74907 * 37.94248 * 20 19 18 22 22 C 1.53870 * 110.03116 * 63.96619 * 18 16 2 23 23 H 1.08997 * 109.46913 * 359.96940 * 1 2 3 24 24 H 1.08998 * 109.47318 * 119.97471 * 1 2 3 25 25 H 1.08999 * 109.47069 * 239.97463 * 1 2 3 26 26 H 1.09001 * 110.48498 * 225.06996 * 5 3 2 27 27 H 1.09003 * 110.59901 * 102.48399 * 5 3 2 28 28 H 0.96996 * 119.99730 * 179.97438 * 11 10 8 29 29 H 1.08998 * 110.01192 * 302.57747 * 18 16 2 30 30 H 1.09003 * 110.48738 * 335.78201 * 19 18 16 31 31 H 1.08997 * 110.48747 * 98.42316 * 19 18 16 32 32 H 1.09001 * 110.75593 * 279.62644 * 20 19 18 33 33 H 1.09002 * 110.75785 * 156.25407 * 20 19 18 34 34 H 1.08994 * 110.48577 * 203.37950 * 21 20 19 35 35 H 1.08993 * 110.60132 * 80.79280 * 21 20 19 36 36 H 1.09005 * 110.03419 * 238.57127 * 22 18 16 37 37 H 1.08998 * 110.03170 * 359.95409 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1097 0.0000 4 8 1.7946 2.2442 -0.0065 5 6 3.6898 0.7377 0.0101 6 6 3.7010 -0.7487 0.4357 7 1 3.8274 -0.8449 1.5140 8 6 4.7716 -1.5124 -0.3003 9 1 4.4984 -2.3054 -0.9806 10 6 6.1002 -1.2024 -0.1008 11 7 6.4331 -0.2407 0.7322 12 14 7.4272 -2.1485 -1.0136 13 1 6.7954 -3.1724 -1.8839 14 1 8.2195 -1.2097 -1.8479 15 1 8.3219 -2.8160 -0.0341 16 6 2.2930 -1.2124 0.0005 17 1 2.3304 -1.6440 -0.9997 18 6 1.7397 -2.2322 0.9980 19 6 2.6300 -3.4919 1.0147 20 6 1.6298 -4.6616 1.1895 21 6 0.4248 -4.2128 0.3259 22 6 0.3376 -2.6905 0.5601 23 1 -0.3633 1.0277 0.0005 24 1 -0.3634 -0.5134 -0.8902 25 1 -0.3633 -0.5142 0.8897 26 1 4.2326 1.3458 0.7338 27 1 4.1216 0.8532 -0.9841 28 1 7.3678 -0.0229 0.8728 29 1 1.6946 -1.7927 1.9945 30 1 3.1705 -3.5896 0.0731 31 1 3.3257 -3.4563 1.8530 32 1 1.3381 -4.7675 2.2343 33 1 2.0526 -5.5915 0.8091 34 1 -0.4888 -4.7033 0.6617 35 1 0.6068 -4.4270 -0.7272 36 1 -0.3878 -2.4744 1.3445 37 1 0.0511 -2.1859 -0.3625 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259697244.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:11 Heat of formation + Delta-G solvation = -52.868237 kcal Electronic energy + Delta-G solvation = -17888.212512 eV Core-core repulsion = 15243.436105 eV Total energy + Delta-G solvation = -2644.776407 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.93256 -37.62825 -35.29542 -33.46008 -31.20572 -29.40147 -28.22386 -26.60252 -25.34798 -23.65433 -20.70196 -19.94427 -19.42892 -18.49170 -16.76521 -15.72417 -15.59011 -14.94764 -14.57095 -14.42148 -14.13887 -13.28972 -12.89516 -12.66595 -12.46331 -12.33277 -12.10787 -11.64957 -11.42368 -11.02643 -10.85573 -10.69395 -10.62626 -10.60413 -10.43377 -10.26208 -10.18402 -9.93796 -9.35971 -9.22619 -8.79636 -8.44993 -7.98220 -6.14045 -4.18624 3.24067 3.33528 3.35299 3.44929 3.79293 4.34748 4.94461 5.00633 5.05988 5.20534 5.40168 5.61478 5.67994 5.72743 5.83633 5.88775 5.94051 5.97146 6.06384 6.11416 6.15925 6.20527 6.35569 6.41613 6.49003 6.58488 6.62486 6.81157 6.90137 6.95140 7.34932 7.39990 7.60831 7.82497 7.89545 8.21919 8.81980 9.02885 9.46899 10.95819 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.010987 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.198270 B = 2547.846279 C = 3798.190426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.622 5.622 3 C 0.510 3.490 4 O -0.567 6.567 5 C -0.131 4.131 6 C 0.055 3.945 7 H 0.046 0.954 8 C -0.512 4.512 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.884 5.884 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.140 3.860 17 H 0.071 0.929 18 C -0.090 4.090 19 C -0.106 4.106 20 C -0.128 4.128 21 C -0.124 4.124 22 C -0.129 4.129 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.095 -7.084 -0.032 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.356 5.356 3 C 0.301 3.699 4 O -0.448 6.448 5 C -0.172 4.172 6 C 0.036 3.964 7 H 0.064 0.936 8 C -0.550 4.550 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.521 5.521 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.037 3.963 17 H 0.089 0.911 18 C -0.109 4.109 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.161 4.161 22 C -0.166 4.166 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.249 -6.394 0.036 11.244 hybrid contribution 0.717 -0.454 -0.431 0.952 sum -8.532 -6.848 -0.395 10.948 Atomic orbital electron populations 1.21622 0.80620 1.02310 1.00602 1.48419 1.05335 1.08492 1.73358 1.21878 0.91214 0.83595 0.73200 1.90580 1.79828 1.21789 1.52557 1.22445 0.89332 1.01385 1.04004 1.19674 0.88657 0.90329 0.97749 0.93586 1.20963 0.90072 1.18217 1.25782 0.91883 1.24961 0.98683 0.95013 0.94989 1.69960 1.17722 1.29422 1.35046 0.86548 0.81905 0.79930 0.79725 1.19653 1.21028 1.21014 1.22205 0.92123 0.83630 0.98340 0.91059 1.21961 0.93924 0.96083 0.98931 1.22299 0.96633 0.91799 1.03652 1.22544 0.96238 0.98555 0.99198 1.22361 0.97914 0.95933 0.99928 1.22561 0.97372 0.95604 1.01090 0.91197 0.92861 0.92384 0.89096 0.89090 0.92783 0.91475 0.89974 0.91362 0.92244 0.92096 0.92619 0.91937 0.92484 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.39 9.14 59.85 0.55 1.94 16 2 N -0.62 -11.91 3.19 -172.66 -0.55 -12.46 16 3 C 0.51 11.49 8.02 -10.86 -0.09 11.40 16 4 O -0.57 -14.13 17.35 5.56 0.10 -14.04 16 5 C -0.13 -3.07 5.62 -26.74 -0.15 -3.22 16 6 C 0.05 1.24 2.14 -90.13 -0.19 1.05 16 7 H 0.05 1.13 7.91 -51.93 -0.41 0.72 16 8 C -0.51 -12.45 7.43 -34.44 -0.26 -12.70 16 9 H 0.06 1.50 6.88 -52.49 -0.36 1.14 16 10 C 0.07 1.70 5.35 -17.82 -0.10 1.60 16 11 N -0.88 -23.80 12.63 55.43 0.70 -23.10 16 12 Si 0.89 19.92 29.54 -169.99 -5.02 14.90 16 13 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 C 0.14 2.64 2.22 -66.97 -0.15 2.49 16 17 H 0.07 1.38 7.76 -51.93 -0.40 0.98 16 18 C -0.09 -1.45 2.41 -89.50 -0.22 -1.67 16 19 C -0.11 -1.68 5.52 -25.07 -0.14 -1.82 16 20 C -0.13 -1.65 6.91 -24.74 -0.17 -1.82 16 21 C -0.12 -1.50 6.83 -25.07 -0.17 -1.67 16 22 C -0.13 -1.71 4.56 -25.62 -0.12 -1.83 16 23 H 0.07 1.11 7.53 -51.93 -0.39 0.72 16 24 H 0.05 0.71 6.99 -51.93 -0.36 0.35 16 25 H 0.06 0.79 6.13 -51.93 -0.32 0.47 16 26 H 0.09 2.27 8.08 -51.93 -0.42 1.85 16 27 H 0.09 2.20 7.89 -51.93 -0.41 1.79 16 28 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.08 1.43 6.49 -51.93 -0.34 1.09 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.70 7.54 -51.93 -0.39 0.31 16 37 H 0.07 0.90 5.15 -51.93 -0.27 0.63 16 LS Contribution 285.69 15.07 4.31 4.31 Total: -1.00 -27.73 285.69 -7.41 -35.14 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.74 Total: 1.50 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -1.20 Total: -6.25 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.15 Total: -35.55 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: 0.10 Total: -14.04 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.73 -7.41 -35.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259697244.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.730 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds