Wall clock time and date at job start Mon Mar 30 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34415 * 124.34995 * 2 1 4 4 O 1.21281 * 124.94577 * 359.62726 * 3 2 1 5 5 C 1.51285 * 110.11358 * 179.59304 * 3 2 1 6 6 C 1.54623 * 104.19688 * 343.74514 * 5 3 2 7 7 H 1.08993 * 110.97505 * 266.64462 * 6 5 3 8 8 C 1.50706 * 110.96910 * 142.91560 * 6 5 3 9 9 H 1.07995 * 120.00167 * 244.21638 * 8 6 5 10 10 C 1.37879 * 119.99394 * 64.49336 * 8 6 5 11 11 N 1.31514 * 120.00338 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99424 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47487 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47233 * 120.00158 * 12 10 8 15 15 H 1.48508 * 109.46883 * 239.99963 * 12 10 8 16 16 C 1.46820 * 124.33240 * 179.97438 * 2 1 3 17 17 H 1.09000 * 110.24246 * 78.01672 * 16 2 1 18 18 C 1.53006 * 110.28309 * 315.99646 * 16 2 1 19 19 C 1.54265 * 110.03407 * 181.13698 * 18 16 2 20 20 C 1.54887 * 104.19389 * 217.10476 * 19 18 16 21 21 C 1.54893 * 102.74907 * 37.94248 * 20 19 18 22 22 C 1.53870 * 110.03116 * 63.96619 * 18 16 2 23 23 H 1.08997 * 109.46913 * 359.96940 * 1 2 3 24 24 H 1.08998 * 109.47318 * 119.97471 * 1 2 3 25 25 H 1.08999 * 109.47069 * 239.97463 * 1 2 3 26 26 H 1.09001 * 110.48498 * 225.06996 * 5 3 2 27 27 H 1.09003 * 110.59901 * 102.48399 * 5 3 2 28 28 H 0.96996 * 119.99730 * 179.97438 * 11 10 8 29 29 H 1.08998 * 110.01192 * 302.57747 * 18 16 2 30 30 H 1.09003 * 110.48738 * 335.78201 * 19 18 16 31 31 H 1.08997 * 110.48747 * 98.42316 * 19 18 16 32 32 H 1.09001 * 110.75593 * 279.62644 * 20 19 18 33 33 H 1.09002 * 110.75785 * 156.25407 * 20 19 18 34 34 H 1.08994 * 110.48577 * 203.37950 * 21 20 19 35 35 H 1.08993 * 110.60132 * 80.79280 * 21 20 19 36 36 H 1.09005 * 110.03419 * 238.57127 * 22 18 16 37 37 H 1.08998 * 110.03170 * 359.95409 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1097 0.0000 4 8 1.7946 2.2442 -0.0065 5 6 3.6898 0.7377 0.0101 6 6 3.7010 -0.7487 0.4357 7 1 3.8274 -0.8449 1.5140 8 6 4.7716 -1.5124 -0.3003 9 1 4.4984 -2.3054 -0.9806 10 6 6.1002 -1.2024 -0.1008 11 7 6.4331 -0.2407 0.7322 12 14 7.4272 -2.1485 -1.0136 13 1 6.7954 -3.1724 -1.8839 14 1 8.2195 -1.2097 -1.8479 15 1 8.3219 -2.8160 -0.0341 16 6 2.2930 -1.2124 0.0005 17 1 2.3304 -1.6440 -0.9997 18 6 1.7397 -2.2322 0.9980 19 6 2.6300 -3.4919 1.0147 20 6 1.6298 -4.6616 1.1895 21 6 0.4248 -4.2128 0.3259 22 6 0.3376 -2.6905 0.5601 23 1 -0.3633 1.0277 0.0005 24 1 -0.3634 -0.5134 -0.8902 25 1 -0.3633 -0.5142 0.8897 26 1 4.2326 1.3458 0.7338 27 1 4.1216 0.8532 -0.9841 28 1 7.3678 -0.0229 0.8728 29 1 1.6946 -1.7927 1.9945 30 1 3.1705 -3.5896 0.0731 31 1 3.3257 -3.4563 1.8530 32 1 1.3381 -4.7675 2.2343 33 1 2.0526 -5.5915 0.8091 34 1 -0.4888 -4.7033 0.6617 35 1 0.6068 -4.4270 -0.7272 36 1 -0.3878 -2.4744 1.3445 37 1 0.0511 -2.1859 -0.3625 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259697244.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:11 Heat of formation + Delta-G solvation = -68.277435 kcal Electronic energy + Delta-G solvation = -17888.880705 eV Core-core repulsion = 15243.436105 eV Total energy + Delta-G solvation = -2645.444600 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.57090 -39.06540 -36.91579 -35.25412 -32.96934 -30.77775 -29.39113 -28.29679 -26.92444 -25.30490 -22.27776 -21.20061 -20.77332 -20.14284 -18.57388 -17.37659 -17.16869 -16.46198 -16.30146 -15.81076 -15.55364 -14.70747 -14.54722 -14.25063 -14.01307 -13.83657 -13.47829 -13.14781 -12.99322 -12.79744 -12.59108 -12.39334 -12.03680 -11.89555 -11.70144 -11.58115 -11.34576 -11.23021 -11.19586 -10.85292 -10.71725 -10.37827 -9.56879 -8.11782 -6.20987 1.44881 1.49008 1.58104 1.62956 2.22726 2.46798 3.21221 3.67575 3.83149 3.90802 3.97291 4.19420 4.41154 4.51201 4.56663 4.59746 4.71238 4.77307 4.78222 4.79917 4.92093 4.92411 5.00975 5.08009 5.22279 5.24954 5.36438 5.41477 5.55566 5.58582 5.62627 5.72351 5.82335 5.86860 6.14286 6.31948 6.86573 7.26927 7.47657 8.98368 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018610 B = 0.010987 C = 0.007370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.198270 B = 2547.846279 C = 3798.190426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.612 5.612 3 C 0.507 3.493 4 O -0.595 6.595 5 C -0.127 4.127 6 C 0.054 3.946 7 H 0.020 0.980 8 C -0.510 4.510 9 H 0.070 0.930 10 C 0.017 3.983 11 N -0.920 5.920 12 Si 0.950 3.050 13 H -0.259 1.259 14 H -0.289 1.289 15 H -0.285 1.285 16 C 0.149 3.851 17 H 0.074 0.926 18 C -0.087 4.087 19 C -0.108 4.108 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.124 4.124 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.260 0.740 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.064 -9.237 -0.716 14.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.343 5.343 3 C 0.297 3.703 4 O -0.478 6.478 5 C -0.168 4.168 6 C 0.035 3.965 7 H 0.038 0.962 8 C -0.548 4.548 9 H 0.088 0.912 10 C -0.182 4.182 11 N -0.558 5.558 12 Si 0.777 3.223 13 H -0.183 1.183 14 H -0.215 1.215 15 H -0.211 1.211 16 C 0.046 3.954 17 H 0.092 0.908 18 C -0.106 4.106 19 C -0.146 4.146 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.161 4.161 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.251 -8.592 -0.655 14.172 hybrid contribution 1.330 0.213 -0.195 1.361 sum -9.921 -8.379 -0.849 13.014 Atomic orbital electron populations 1.21951 0.77549 1.02845 1.03203 1.48438 1.07128 1.07242 1.71537 1.21583 0.91003 0.84006 0.73667 1.90556 1.80055 1.22899 1.54310 1.22278 0.90417 1.01687 1.02432 1.19552 0.91110 0.89845 0.96004 0.96233 1.21248 0.90443 1.17892 1.25221 0.91168 1.25696 1.00889 0.95835 0.95801 1.70090 1.17866 1.31112 1.36775 0.85611 0.79355 0.78794 0.78564 1.18307 1.21493 1.21094 1.22082 0.90076 0.84000 0.99219 0.90768 1.21924 0.96135 0.95173 0.97410 1.22249 0.97066 0.93422 1.01880 1.22512 0.95655 0.97457 1.00227 1.22349 0.98381 0.94886 0.99971 1.22528 0.95165 0.96619 1.01795 0.91806 0.89916 0.89941 0.91713 0.90392 0.93059 0.92567 0.91658 0.93374 0.91285 0.91074 0.90227 0.91673 0.90724 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.35 9.14 127.77 1.17 3.52 16 2 N -0.61 -22.65 3.19 -818.75 -2.61 -25.26 16 3 C 0.51 23.09 8.02 87.90 0.71 23.80 16 4 O -0.60 -30.00 17.35 -3.03 -0.05 -30.05 16 5 C -0.13 -6.20 5.62 30.59 0.17 -6.03 16 6 C 0.05 2.50 2.14 -10.48 -0.02 2.48 16 7 H 0.02 1.01 7.91 -2.39 -0.02 0.99 16 8 C -0.51 -25.05 7.43 25.60 0.19 -24.86 16 9 H 0.07 3.30 6.88 -2.91 -0.02 3.28 16 10 C 0.02 0.89 5.35 84.66 0.45 1.35 16 11 N -0.92 -51.14 12.63 21.45 0.27 -50.87 16 12 Si 0.95 41.11 29.54 68.60 2.03 43.14 16 13 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 14 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 C 0.15 5.49 2.22 45.44 0.10 5.59 16 17 H 0.07 2.75 7.76 -2.39 -0.02 2.73 16 18 C -0.09 -2.66 2.41 -10.07 -0.02 -2.69 16 19 C -0.11 -3.31 5.52 31.67 0.17 -3.13 16 20 C -0.12 -2.74 6.91 31.89 0.22 -2.52 16 21 C -0.12 -2.36 6.83 31.67 0.22 -2.14 16 22 C -0.12 -2.79 4.56 31.32 0.14 -2.65 16 23 H 0.06 1.89 7.53 -2.39 -0.02 1.87 16 24 H 0.08 1.86 6.99 -2.39 -0.02 1.84 16 25 H 0.08 1.92 6.13 -2.39 -0.01 1.90 16 26 H 0.06 3.44 8.08 -2.39 -0.02 3.42 16 27 H 0.08 3.93 7.89 -2.39 -0.02 3.91 16 28 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 2.21 6.49 -2.39 -0.02 2.19 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.47 7.54 -2.38 -0.02 1.45 16 37 H 0.07 1.60 5.15 -2.39 -0.01 1.59 16 Total: -1.00 -60.70 285.69 4.18 -56.53 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.04 Total: 13.81 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 3.50 Total: -7.30 kcal Atomic # 7 Polarization: -73.79 SS G_CDS: -2.34 Total: -76.13 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -0.05 Total: -30.05 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -60.70 4.18 -56.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259697244.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.749 kcal (2) G-P(sol) polarization free energy of solvation -60.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds