Wall clock time and date at job start Mon Mar 30 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.32907 * 117.15517 * 2 1 4 4 O 1.21281 * 118.27758 * 354.44624 * 3 2 1 5 5 C 1.50094 * 123.44605 * 174.16949 * 3 2 1 6 6 C 1.53254 * 109.93312 * 51.94672 * 5 3 2 7 7 C 1.52662 * 108.29764 * 268.31051 * 6 5 3 8 8 C 1.53293 * 109.46409 * 32.79244 * 7 6 5 9 9 H 1.09005 * 109.56292 * 300.33764 * 8 7 6 10 10 C 1.50703 * 109.56485 * 179.97438 * 8 7 6 11 11 H 1.08001 * 119.99842 * 240.00094 * 10 8 7 12 12 C 1.37874 * 120.00066 * 59.99803 * 10 8 7 13 13 N 1.31512 * 119.99886 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00120 * 179.97438 * 12 10 8 15 15 H 1.48510 * 109.46864 * 60.00300 * 14 12 10 16 16 H 1.48496 * 109.47042 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47188 * 300.00540 * 14 12 10 18 18 C 1.45929 * 117.19389 * 180.27305 * 2 1 3 19 19 H 1.08997 * 109.37046 * 90.85398 * 18 2 1 20 20 C 1.53005 * 109.08158 * 331.49117 * 18 2 1 21 21 C 1.52998 * 117.49667 * 134.19864 * 20 18 2 22 22 C 1.53003 * 117.49581 * 65.54435 * 20 18 2 23 23 H 1.08998 * 109.46902 * 357.42040 * 1 2 3 24 24 H 1.08994 * 109.47214 * 117.41993 * 1 2 3 25 25 H 1.08997 * 109.46869 * 237.42180 * 1 2 3 26 26 H 1.08997 * 109.39546 * 172.08790 * 5 3 2 27 27 H 1.09000 * 109.39214 * 291.89935 * 5 3 2 28 28 H 1.08996 * 109.70066 * 28.00955 * 6 5 3 29 29 H 1.09000 * 109.70082 * 148.57395 * 6 5 3 30 30 H 1.09009 * 109.46905 * 152.78725 * 7 6 5 31 31 H 1.08994 * 109.47710 * 272.79028 * 7 6 5 32 32 H 0.97003 * 120.00117 * 179.97438 * 13 12 10 33 33 H 1.08998 * 115.55228 * 279.87628 * 20 18 2 34 34 H 1.09003 * 117.49914 * 0.02562 * 21 20 18 35 35 H 1.08998 * 117.49683 * 145.01806 * 21 20 18 36 36 H 1.09006 * 117.49798 * 214.97997 * 22 20 18 37 37 H 1.09005 * 117.50047 * 359.97263 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0716 1.1826 0.0000 4 8 1.3879 2.1790 -0.1034 5 6 3.5577 1.3500 0.1272 6 6 4.2726 0.4741 -0.9074 7 6 4.5754 -0.8769 -0.2643 8 6 3.4683 -1.2256 0.7370 9 1 3.4167 -0.4555 1.5068 10 6 3.7647 -2.5594 1.3728 11 1 3.0652 -3.3755 1.2667 12 6 4.9287 -2.7380 2.0897 13 7 5.7802 -1.7441 2.2192 14 14 5.2957 -4.3911 2.8784 15 1 5.3577 -5.4382 1.8271 16 1 6.5993 -4.3233 3.5862 17 1 4.2221 -4.7262 3.8480 18 6 2.1319 -1.2980 -0.0062 19 1 2.3107 -1.6076 -1.0358 20 6 1.2303 -2.3268 0.6791 21 6 1.0513 -3.6804 -0.0114 22 6 -0.0967 -2.6680 -0.0019 23 1 -0.3633 1.0266 0.0463 24 1 -0.3633 -0.4732 -0.9122 25 1 -0.3633 -0.5533 0.8660 26 1 3.8199 2.3947 -0.0399 27 1 3.8709 1.0539 1.1284 28 1 3.6293 0.3318 -1.7757 29 1 5.2029 0.9525 -1.2138 30 1 4.6217 -1.6447 -1.0368 31 1 5.5323 -0.8260 0.2550 32 1 6.5990 -1.8696 2.7239 33 1 1.2486 -2.3162 1.7688 34 1 1.5763 -3.8381 -0.9536 35 1 0.9517 -4.5603 0.6242 36 1 -0.9513 -2.8823 0.6400 37 1 -0.3276 -2.1592 -0.9378 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259765595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:21 Heat of formation + Delta-G solvation = -17.845974 kcal Electronic energy + Delta-G solvation = -18232.265686 eV Core-core repulsion = 15589.007958 eV Total energy + Delta-G solvation = -2643.257728 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.77381 -39.02773 -37.14225 -35.28042 -34.28272 -31.46695 -29.07079 -27.20918 -26.43572 -24.41564 -23.02242 -21.77071 -20.78780 -20.12659 -18.29669 -17.36326 -17.15864 -16.71098 -16.36495 -15.87567 -15.39789 -15.08963 -14.73959 -14.16244 -14.02819 -13.56698 -13.32879 -13.09347 -13.00133 -12.76157 -12.59238 -12.47668 -11.99545 -11.86369 -11.78960 -11.46379 -11.34058 -11.08708 -10.78629 -10.51718 -10.43010 -10.23414 -9.54803 -8.00309 -6.08459 1.47080 1.48857 1.53941 1.67094 2.17932 2.51392 3.14970 3.30036 3.71769 3.85641 4.07647 4.18227 4.20396 4.31512 4.34291 4.46557 4.57638 4.68442 4.73166 4.89922 4.90750 4.95908 5.03421 5.10052 5.11117 5.18609 5.22083 5.39595 5.44480 5.52848 5.63051 5.79982 5.99657 6.16588 6.40128 6.66012 7.00905 7.21556 7.58105 9.05137 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.010976 C = 0.008139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.014485 B = 2550.426756 C = 3439.490486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.593 5.593 3 C 0.516 3.484 4 O -0.607 6.607 5 C -0.134 4.134 6 C -0.105 4.105 7 C -0.113 4.113 8 C 0.040 3.960 9 H 0.012 0.988 10 C -0.514 4.514 11 H 0.080 0.920 12 C 0.015 3.985 13 N -0.917 5.917 14 Si 0.942 3.058 15 H -0.271 1.271 16 H -0.295 1.295 17 H -0.275 1.275 18 C 0.186 3.814 19 H 0.062 0.938 20 C -0.147 4.147 21 C -0.165 4.165 22 C -0.171 4.171 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 -1.909 -5.120 9.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.322 5.322 3 C 0.306 3.694 4 O -0.492 6.492 5 C -0.174 4.174 6 C -0.142 4.142 7 C -0.151 4.151 8 C 0.021 3.979 9 H 0.030 0.970 10 C -0.553 4.553 11 H 0.098 0.902 12 C -0.183 4.183 13 N -0.557 5.557 14 Si 0.769 3.231 15 H -0.196 1.196 16 H -0.221 1.221 17 H -0.201 1.201 18 C 0.084 3.916 19 H 0.080 0.920 20 C -0.166 4.166 21 C -0.203 4.203 22 C -0.208 4.208 23 H 0.086 0.914 24 H 0.098 0.902 25 H 0.094 0.906 26 H 0.112 0.888 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.544 -1.396 -5.092 9.209 hybrid contribution 0.768 -0.778 0.798 1.354 sum -6.776 -2.174 -4.294 8.312 Atomic orbital electron populations 1.22124 0.79768 1.03072 1.02903 1.47494 1.08322 1.05957 1.70391 1.20295 0.91509 0.82583 0.74997 1.90586 1.66614 1.37977 1.53974 1.21822 0.90415 1.02226 1.02920 1.21532 0.99839 0.96374 0.96489 1.21676 1.02345 0.93776 0.97305 1.19166 0.89148 0.96432 0.93109 0.96987 1.21690 1.04596 0.98021 1.30963 0.90199 1.25604 0.96572 0.98906 0.97212 1.69994 1.11138 1.32445 1.42167 0.85859 0.76847 0.81573 0.78812 1.19616 1.22130 1.20087 1.20789 0.92848 0.79669 0.98280 0.92028 1.22115 0.98342 0.97442 0.98697 1.22979 1.02279 0.92829 1.02194 1.23411 0.91907 1.02524 1.02969 0.91383 0.90248 0.90604 0.88838 0.89227 0.92489 0.90528 0.94282 0.91208 0.93457 0.89160 0.89006 0.88612 0.87348 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.90 8.60 127.77 1.10 3.00 16 2 N -0.59 -21.56 3.11 -827.33 -2.58 -24.14 16 3 C 0.52 20.74 6.74 87.76 0.59 21.33 16 4 O -0.61 -26.93 15.85 -3.03 -0.05 -26.97 16 5 C -0.13 -5.11 5.38 29.74 0.16 -4.95 16 6 C -0.10 -3.76 5.74 30.57 0.18 -3.59 16 7 C -0.11 -4.83 4.77 30.58 0.15 -4.68 16 8 C 0.04 1.79 1.65 -11.41 -0.02 1.77 16 9 H 0.01 0.62 5.54 -2.38 -0.01 0.61 16 10 C -0.51 -24.91 7.67 25.60 0.20 -24.72 16 11 H 0.08 3.66 5.08 -2.91 -0.01 3.65 16 12 C 0.02 0.78 5.30 84.65 0.45 1.23 16 13 N -0.92 -49.59 11.33 21.45 0.24 -49.34 16 14 Si 0.94 41.07 29.54 68.60 2.03 43.09 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.30 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 C 0.19 6.87 2.47 45.13 0.11 6.99 16 19 H 0.06 2.24 7.55 -2.39 -0.02 2.22 16 20 C -0.15 -4.84 2.57 -10.79 -0.03 -4.87 16 21 C -0.17 -4.65 9.07 30.62 0.28 -4.37 16 22 C -0.17 -4.16 7.69 30.62 0.24 -3.92 16 23 H 0.07 2.21 6.54 -2.39 -0.02 2.20 16 24 H 0.08 1.98 6.10 -2.39 -0.01 1.96 16 25 H 0.08 2.09 6.24 -2.39 -0.01 2.08 16 26 H 0.09 3.25 8.09 -2.39 -0.02 3.23 16 27 H 0.09 3.82 5.89 -2.39 -0.01 3.80 16 28 H 0.06 1.93 7.82 -2.39 -0.02 1.91 16 29 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.04 1.63 8.09 -2.38 -0.02 1.61 16 31 H 0.07 3.42 6.09 -2.39 -0.01 3.41 16 32 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 33 H 0.09 3.38 7.73 -2.39 -0.02 3.36 16 34 H 0.09 2.57 8.08 -2.39 -0.02 2.55 16 35 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.10 2.31 6.06 -2.38 -0.01 2.29 16 Total: -1.00 -57.60 276.47 4.10 -53.49 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 1.06 Total: 20.65 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 3.40 Total: -16.79 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -2.33 Total: -73.48 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.97 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 2.03 Total: 43.09 kcal Total: -57.60 4.10 -53.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259765595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.648 kcal (2) G-P(sol) polarization free energy of solvation -57.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds