Wall clock time and date at job start Mon Mar 30 2020 03:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46930 * 2 1 4 4 C 1.46763 * 124.34777 * 90.00018 * 3 2 1 5 5 C 1.54476 * 105.47232 * 163.00331 * 4 3 2 6 6 H 1.09003 * 110.97106 * 143.56647 * 5 4 3 7 7 C 1.52995 * 110.96932 * 267.29532 * 5 4 3 8 8 H 1.09003 * 109.47653 * 56.90779 * 7 5 4 9 9 C 1.50702 * 109.47189 * 176.90904 * 7 5 4 10 10 H 1.07997 * 120.00077 * 58.68695 * 9 7 5 11 11 C 1.37878 * 120.00051 * 238.67983 * 9 7 5 12 12 N 1.31509 * 120.00029 * 5.71069 * 11 9 7 13 13 Si 1.86800 * 119.99813 * 185.71094 * 11 9 7 14 14 H 1.48499 * 109.47283 * 60.00311 * 13 11 9 15 15 H 1.48501 * 109.46980 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47253 * 299.99824 * 13 11 9 17 17 C 1.53006 * 109.47071 * 296.90995 * 7 5 4 18 18 C 1.52995 * 117.49870 * 109.18303 * 17 7 5 19 19 C 1.53001 * 117.49886 * 177.84343 * 17 7 5 20 20 C 1.54631 * 101.79752 * 25.43082 * 5 4 3 21 21 C 1.34413 * 124.34687 * 270.01899 * 3 2 1 22 22 O 1.21288 * 124.94404 * 0.41656 * 21 3 2 23 23 H 1.08989 * 109.47590 * 300.00384 * 1 2 3 24 24 H 1.09004 * 109.46580 * 60.00604 * 1 2 3 25 25 H 1.09003 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47702 * 239.99477 * 2 1 3 27 27 H 1.09004 * 109.46580 * 119.99396 * 2 1 3 28 28 H 1.08992 * 110.24876 * 44.00001 * 4 3 2 29 29 H 1.08998 * 110.24275 * 281.99774 * 4 3 2 30 30 H 0.97003 * 120.00118 * 179.97438 * 12 11 9 31 31 H 1.08997 * 115.54769 * 323.50912 * 17 7 5 32 32 H 1.09003 * 117.49874 * 215.00460 * 18 17 7 33 33 H 1.09003 * 117.49827 * 0.02562 * 18 17 7 34 34 H 1.09004 * 117.49771 * 359.97206 * 19 17 7 35 35 H 1.08998 * 117.49735 * 144.97276 * 19 17 7 36 36 H 1.09002 * 110.48751 * 93.86732 * 20 5 4 37 37 H 1.09009 * 110.48748 * 216.50640 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1739 3.3444 0.7487 6 1 2.9304 4.2518 1.3015 7 6 4.6601 3.0069 0.8832 8 1 4.8810 2.1047 0.3128 9 6 5.4851 4.1511 0.3528 10 1 5.3833 5.1358 0.7843 11 6 6.3702 3.9406 -0.6833 12 7 6.4141 2.7711 -1.2832 13 14 7.5067 5.3166 -1.2348 14 1 8.3731 5.7275 -0.1008 15 1 8.3534 4.8392 -2.3575 16 1 6.6969 6.4771 -1.6849 17 6 4.9988 2.7741 2.3571 18 6 5.3090 1.3407 2.7927 19 6 6.4355 2.3726 2.6969 20 6 2.7689 3.4767 -0.7378 21 6 2.2707 2.0964 -1.1098 22 8 2.1206 1.6946 -2.2443 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.8326 1.5533 1.9382 29 1 1.3636 2.5306 1.6430 30 1 7.0365 2.6232 -2.0124 31 1 4.4737 3.4134 3.0667 32 1 4.9879 1.0368 3.7891 33 1 5.2722 0.5635 2.0293 34 1 7.1394 2.2738 1.8704 35 1 6.8557 2.7480 3.6299 36 1 1.9737 4.2133 -0.8525 37 1 3.6320 3.7480 -1.3458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260333661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:48 Heat of formation + Delta-G solvation = -23.609942 kcal Electronic energy + Delta-G solvation = -17744.146406 eV Core-core repulsion = 15100.638734 eV Total energy + Delta-G solvation = -2643.507673 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.80039 -36.99820 -35.45040 -33.72671 -32.38990 -29.68226 -27.49339 -26.48304 -23.55136 -22.84604 -21.44378 -20.35982 -19.09731 -18.54108 -16.57985 -15.99395 -15.48650 -14.77843 -14.59272 -14.20796 -13.60614 -13.44107 -13.07517 -12.84197 -12.48072 -12.09818 -11.91301 -11.70691 -11.54160 -11.02954 -10.93161 -10.83684 -10.68141 -10.52770 -10.42586 -10.13163 -9.81460 -9.30591 -8.95995 -8.85238 -8.56179 -8.49747 -8.08587 -6.02868 -4.05995 3.31190 3.37986 3.38897 3.39370 3.64797 4.40594 4.84761 5.08123 5.22452 5.39421 5.42696 5.51814 5.55715 5.61539 5.83020 5.86414 5.93827 6.00347 6.03650 6.11733 6.23171 6.26182 6.34226 6.36674 6.55664 6.72829 6.86904 7.05427 7.07062 7.15114 7.21835 7.51585 7.79192 7.80477 7.91042 8.38285 8.94160 9.04936 9.56873 11.04471 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.009385 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.787092 B = 2982.810839 C = 3698.305666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.122 3.878 3 N -0.619 5.619 4 C 0.101 3.899 5 C -0.081 4.081 6 H 0.075 0.925 7 C 0.064 3.936 8 H 0.074 0.926 9 C -0.506 4.506 10 H 0.053 0.947 11 C 0.069 3.931 12 N -0.887 5.887 13 Si 0.885 3.115 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.277 1.277 17 C -0.119 4.119 18 C -0.205 4.205 19 C -0.167 4.167 20 C -0.141 4.141 21 C 0.528 3.472 22 O -0.551 6.551 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.263 0.737 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.423 -2.530 6.828 10.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.000 4.000 3 N -0.354 5.354 4 C -0.021 4.021 5 C -0.101 4.101 6 H 0.094 0.906 7 C 0.046 3.954 8 H 0.092 0.908 9 C -0.544 4.544 10 H 0.071 0.929 11 C -0.134 4.134 12 N -0.524 5.524 13 Si 0.713 3.287 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.137 4.137 18 C -0.242 4.242 19 C -0.204 4.204 20 C -0.181 4.181 21 C 0.317 3.683 22 O -0.429 6.429 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.423 -2.926 6.075 10.029 hybrid contribution 0.714 0.675 -0.139 0.993 sum -6.709 -2.251 5.936 9.236 Atomic orbital electron populations 1.22152 0.96576 1.01599 1.02120 1.21204 0.93601 0.82583 1.02638 1.48272 1.66131 1.13064 1.07919 1.22337 0.98311 0.94351 0.87141 1.22365 0.98395 0.95599 0.93702 0.90642 1.18651 0.88184 0.99682 0.88918 0.90766 1.20853 1.21796 0.95074 1.16692 0.92860 1.24947 0.96975 0.95368 0.96075 1.69888 1.36900 1.22428 1.23170 0.86767 0.81164 0.82594 0.78157 1.20282 1.21433 1.20218 1.22586 0.97358 0.93779 1.00026 1.22995 1.06448 0.94135 1.00637 1.22659 0.93034 1.03219 1.01516 1.22330 1.02813 0.93310 0.99604 1.21199 0.74909 0.88322 0.83833 1.90617 1.54557 1.76128 1.21608 0.92718 0.92478 0.92034 0.90554 0.90937 0.90457 0.93067 0.92728 0.90317 0.90966 0.89816 0.88611 0.91004 0.90157 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 2 C 0.12 1.84 6.65 -4.04 -0.03 1.81 16 3 N -0.62 -11.14 2.93 -172.37 -0.51 -11.65 16 4 C 0.10 1.65 6.76 -3.12 -0.02 1.63 16 5 C -0.08 -1.54 2.66 -88.99 -0.24 -1.78 16 6 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 7 C 0.06 1.42 1.82 -91.77 -0.17 1.26 16 8 H 0.07 1.92 6.70 -51.93 -0.35 1.58 16 9 C -0.51 -12.62 6.96 -34.44 -0.24 -12.86 16 10 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 11 C 0.07 1.81 5.32 -17.82 -0.09 1.72 16 12 N -0.89 -24.71 12.62 55.43 0.70 -24.01 16 13 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 C -0.12 -2.31 4.19 -90.62 -0.38 -2.69 16 18 C -0.21 -3.65 9.37 -26.70 -0.25 -3.90 16 19 C -0.17 -3.27 9.93 -26.69 -0.27 -3.54 16 20 C -0.14 -2.88 6.27 -26.69 -0.17 -3.05 16 21 C 0.53 11.38 8.02 -10.82 -0.09 11.29 16 22 O -0.55 -13.70 17.60 5.55 0.10 -13.60 16 23 H 0.05 0.64 8.14 -51.94 -0.42 0.21 16 24 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.23 6.32 -51.93 -0.33 0.90 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.08 1.41 8.13 -51.93 -0.42 0.99 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.59 8.06 -51.93 -0.42 1.17 16 34 H 0.10 2.15 8.14 -51.93 -0.42 1.73 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.12 2.94 6.97 -51.92 -0.36 2.58 16 LS Contribution 303.85 15.07 4.58 4.58 Total: -1.00 -28.95 303.85 -7.77 -36.72 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.06 Total: 4.12 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: -1.55 Total: -11.81 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.19 Total: -35.66 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.10 Total: -13.60 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.95 -7.77 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.109 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds