Wall clock time and date at job start Mon Mar 30 2020 03:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46930 * 2 1 4 4 C 1.46763 * 124.34777 * 90.00018 * 3 2 1 5 5 C 1.54476 * 105.47232 * 163.00331 * 4 3 2 6 6 H 1.09003 * 110.97106 * 143.56647 * 5 4 3 7 7 C 1.52995 * 110.96932 * 267.29532 * 5 4 3 8 8 H 1.09003 * 109.47653 * 56.90779 * 7 5 4 9 9 C 1.50702 * 109.47189 * 176.90904 * 7 5 4 10 10 H 1.07997 * 120.00077 * 58.68695 * 9 7 5 11 11 C 1.37878 * 120.00051 * 238.67983 * 9 7 5 12 12 N 1.31509 * 120.00029 * 5.71069 * 11 9 7 13 13 Si 1.86800 * 119.99813 * 185.71094 * 11 9 7 14 14 H 1.48499 * 109.47283 * 60.00311 * 13 11 9 15 15 H 1.48501 * 109.46980 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47253 * 299.99824 * 13 11 9 17 17 C 1.53006 * 109.47071 * 296.90995 * 7 5 4 18 18 C 1.52995 * 117.49870 * 109.18303 * 17 7 5 19 19 C 1.53001 * 117.49886 * 177.84343 * 17 7 5 20 20 C 1.54631 * 101.79752 * 25.43082 * 5 4 3 21 21 C 1.34413 * 124.34687 * 270.01899 * 3 2 1 22 22 O 1.21288 * 124.94404 * 0.41656 * 21 3 2 23 23 H 1.08989 * 109.47590 * 300.00384 * 1 2 3 24 24 H 1.09004 * 109.46580 * 60.00604 * 1 2 3 25 25 H 1.09003 * 109.47148 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47702 * 239.99477 * 2 1 3 27 27 H 1.09004 * 109.46580 * 119.99396 * 2 1 3 28 28 H 1.08992 * 110.24876 * 44.00001 * 4 3 2 29 29 H 1.08998 * 110.24275 * 281.99774 * 4 3 2 30 30 H 0.97003 * 120.00118 * 179.97438 * 12 11 9 31 31 H 1.08997 * 115.54769 * 323.50912 * 17 7 5 32 32 H 1.09003 * 117.49874 * 215.00460 * 18 17 7 33 33 H 1.09003 * 117.49827 * 0.02562 * 18 17 7 34 34 H 1.09004 * 117.49771 * 359.97206 * 19 17 7 35 35 H 1.08998 * 117.49735 * 144.97276 * 19 17 7 36 36 H 1.09002 * 110.48751 * 93.86732 * 20 5 4 37 37 H 1.09009 * 110.48748 * 216.50640 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1739 3.3444 0.7487 6 1 2.9304 4.2518 1.3015 7 6 4.6601 3.0069 0.8832 8 1 4.8810 2.1047 0.3128 9 6 5.4851 4.1511 0.3528 10 1 5.3833 5.1358 0.7843 11 6 6.3702 3.9406 -0.6833 12 7 6.4141 2.7711 -1.2832 13 14 7.5067 5.3166 -1.2348 14 1 8.3731 5.7275 -0.1008 15 1 8.3534 4.8392 -2.3575 16 1 6.6969 6.4771 -1.6849 17 6 4.9988 2.7741 2.3571 18 6 5.3090 1.3407 2.7927 19 6 6.4355 2.3726 2.6969 20 6 2.7689 3.4767 -0.7378 21 6 2.2707 2.0964 -1.1098 22 8 2.1206 1.6946 -2.2443 23 1 -0.3634 0.5138 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.8326 1.5533 1.9382 29 1 1.3636 2.5306 1.6430 30 1 7.0365 2.6232 -2.0124 31 1 4.4737 3.4134 3.0667 32 1 4.9879 1.0368 3.7891 33 1 5.2722 0.5635 2.0293 34 1 7.1394 2.2738 1.8704 35 1 6.8557 2.7480 3.6299 36 1 1.9737 4.2133 -0.8525 37 1 3.6320 3.7480 -1.3458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260333661.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:47 Heat of formation + Delta-G solvation = -39.935288 kcal Electronic energy + Delta-G solvation = -17744.854326 eV Core-core repulsion = 15100.638734 eV Total energy + Delta-G solvation = -2644.215593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.35808 -38.62745 -37.04820 -35.22409 -34.17522 -31.15756 -29.08759 -28.09221 -25.30933 -24.13525 -22.93923 -21.86607 -20.73162 -20.07935 -18.45483 -17.53953 -17.01551 -16.51767 -16.22548 -15.72950 -15.06421 -14.95471 -14.51308 -14.36615 -14.02707 -13.70489 -13.49336 -13.09672 -12.98004 -12.78499 -12.56005 -12.32515 -12.20231 -12.17136 -11.94390 -11.73518 -11.46278 -11.03326 -10.65193 -10.54688 -10.43651 -10.22502 -9.52639 -8.04000 -6.09550 1.42407 1.44060 1.49729 1.72813 2.27229 2.46576 3.20722 3.39770 3.69432 3.91340 4.07151 4.22753 4.31050 4.40500 4.44006 4.48269 4.54252 4.61629 4.78958 4.82143 4.93688 4.94218 4.99038 5.02700 5.22260 5.29552 5.35458 5.39230 5.45755 5.56756 5.77741 5.80207 5.91017 6.05314 6.27243 6.45924 7.09686 7.33024 7.55255 9.02285 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023627 B = 0.009385 C = 0.007569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.787092 B = 2982.810839 C = 3698.305666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.113 3.887 3 N -0.613 5.613 4 C 0.107 3.893 5 C -0.078 4.078 6 H 0.100 0.900 7 C 0.064 3.936 8 H 0.029 0.971 9 C -0.500 4.500 10 H 0.055 0.945 11 C 0.019 3.981 12 N -0.924 5.924 13 Si 0.933 3.067 14 H -0.270 1.270 15 H -0.298 1.298 16 H -0.271 1.271 17 C -0.124 4.124 18 C -0.179 4.179 19 C -0.183 4.183 20 C -0.141 4.141 21 C 0.514 3.486 22 O -0.599 6.599 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.087 0.913 26 H 0.052 0.948 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.253 0.747 31 H 0.108 0.892 32 H 0.112 0.888 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.105 -2.231 9.984 13.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.009 4.009 3 N -0.346 5.346 4 C -0.015 4.015 5 C -0.097 4.097 6 H 0.119 0.881 7 C 0.045 3.955 8 H 0.047 0.953 9 C -0.538 4.538 10 H 0.073 0.927 11 C -0.179 4.179 12 N -0.564 5.564 13 Si 0.761 3.239 14 H -0.196 1.196 15 H -0.224 1.224 16 H -0.196 1.196 17 C -0.142 4.142 18 C -0.215 4.215 19 C -0.220 4.220 20 C -0.180 4.180 21 C 0.304 3.696 22 O -0.482 6.482 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.113 -2.618 9.291 13.275 hybrid contribution 1.237 0.563 -1.074 1.733 sum -7.875 -2.056 8.217 11.566 Atomic orbital electron populations 1.22058 0.94145 1.03290 1.01823 1.21492 0.95578 0.80918 1.02896 1.48414 1.64664 1.14008 1.07479 1.22446 0.99695 0.93052 0.86260 1.22272 0.96642 0.97977 0.92824 0.88147 1.18515 0.90108 0.96634 0.90216 0.95270 1.21240 1.21054 0.95935 1.15588 0.92707 1.25554 0.98694 0.96798 0.96826 1.70048 1.37976 1.24348 1.24038 0.85987 0.79736 0.80628 0.77582 1.19564 1.22425 1.19588 1.22491 0.97393 0.95810 0.98512 1.22970 1.04122 0.92542 1.01913 1.22623 0.92759 1.05289 1.01294 1.22277 1.01947 0.93680 1.00141 1.21450 0.74976 0.89174 0.84034 1.90575 1.56900 1.77119 1.23570 0.90897 0.94741 0.89430 0.92960 0.88057 0.89313 0.88938 0.93754 0.87440 0.87004 0.91707 0.92774 0.88424 0.87475 0.90388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 10.24 71.98 0.74 -2.73 16 2 C 0.11 3.19 6.65 86.38 0.57 3.76 16 3 N -0.61 -21.11 2.93 -817.85 -2.40 -23.51 16 4 C 0.11 3.09 6.76 86.83 0.59 3.68 16 5 C -0.08 -2.79 2.66 -9.74 -0.03 -2.82 16 6 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 7 C 0.06 2.80 1.82 -11.54 -0.02 2.78 16 8 H 0.03 1.54 6.70 -2.39 -0.02 1.53 16 9 C -0.50 -25.03 6.96 25.60 0.18 -24.85 16 10 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 11 C 0.02 1.05 5.32 84.66 0.45 1.50 16 12 N -0.92 -54.21 12.62 21.45 0.27 -53.94 16 13 Si 0.93 43.42 29.54 68.60 2.03 45.44 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 C -0.12 -4.48 4.19 -10.79 -0.05 -4.52 16 18 C -0.18 -5.83 9.37 30.62 0.29 -5.54 16 19 C -0.18 -6.87 9.93 30.62 0.30 -6.57 16 20 C -0.14 -5.75 6.27 30.62 0.19 -5.56 16 21 C 0.51 22.44 8.02 87.93 0.71 23.14 16 22 O -0.60 -31.08 17.60 -3.05 -0.05 -31.14 16 23 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.73 7.93 -2.39 -0.02 1.71 16 27 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.09 2.41 6.32 -2.39 -0.02 2.40 16 29 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.11 3.33 8.13 -2.39 -0.02 3.31 16 32 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.06 2.37 8.06 -2.39 -0.02 2.35 16 34 H 0.05 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 37 H 0.08 3.92 6.97 -2.38 -0.02 3.91 16 Total: -1.00 -67.13 303.85 4.80 -62.33 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.03 Total: 18.54 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 3.92 Total: -17.73 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.13 Total: -77.45 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.05 Total: -31.14 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -67.13 4.80 -62.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260333661.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.398 kcal (2) G-P(sol) polarization free energy of solvation -67.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds