Wall clock time and date at job start Mon Mar 30 2020 03:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34621 * 124.46852 * 2 1 4 4 O 1.21277 * 124.91214 * 359.55995 * 3 2 1 5 5 C 1.51284 * 110.14912 * 179.53195 * 3 2 1 6 6 C 1.54632 * 104.19276 * 343.77249 * 5 3 2 7 7 C 1.46760 * 124.34634 * 179.97438 * 2 1 3 8 8 H 1.09000 * 110.25330 * 316.12857 * 7 2 1 9 9 C 1.53001 * 110.24313 * 78.04038 * 7 2 1 10 10 H 1.09005 * 109.47002 * 170.15240 * 9 7 2 11 11 C 1.52996 * 109.47473 * 50.15037 * 9 7 2 12 12 C 1.50702 * 109.47033 * 176.06767 * 11 9 7 13 13 H 1.07998 * 120.00318 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99728 * 180.02562 * 12 11 9 15 15 N 1.31512 * 120.00301 * 180.02562 * 14 12 11 16 16 Si 1.86809 * 120.00126 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47093 * 89.99781 * 16 14 12 18 18 H 1.48495 * 109.47194 * 210.00147 * 16 14 12 19 19 H 1.48503 * 109.46622 * 330.00039 * 16 14 12 20 20 C 1.52998 * 109.47026 * 290.15219 * 9 7 2 21 21 C 1.53004 * 117.51770 * 231.28700 * 20 9 7 22 22 C 1.53003 * 60.00116 * 107.47976 * 21 20 9 23 23 H 1.08997 * 109.47567 * 270.02552 * 1 2 3 24 24 H 1.09000 * 109.46575 * 30.02284 * 1 2 3 25 25 H 1.08996 * 109.47323 * 150.02209 * 1 2 3 26 26 H 1.08991 * 110.48859 * 225.09380 * 5 3 2 27 27 H 1.08996 * 110.48211 * 102.44538 * 5 3 2 28 28 H 1.09001 * 110.96629 * 266.67509 * 6 5 3 29 29 H 1.09006 * 110.96873 * 142.91454 * 6 5 3 30 30 H 1.08998 * 109.47088 * 296.07108 * 11 9 7 31 31 H 1.09004 * 109.47169 * 56.07061 * 11 9 7 32 32 H 0.96994 * 120.00760 * 180.02562 * 15 14 12 33 33 H 1.08993 * 115.55405 * 85.58398 * 20 9 7 34 34 H 1.09003 * 117.50032 * 214.96590 * 21 20 9 35 35 H 1.08994 * 117.50089 * 359.97438 * 21 20 9 36 36 H 1.09002 * 117.49837 * 252.50946 * 22 21 20 37 37 H 1.09003 * 117.49550 * 107.49136 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2269 1.1099 0.0000 4 8 1.7999 2.2449 -0.0076 5 6 3.6927 0.7357 0.0116 6 6 3.7012 -0.7508 0.4375 7 6 2.2930 -1.2117 0.0005 8 1 1.8973 -1.9388 0.7096 9 6 2.3461 -1.8173 -1.4035 10 1 3.0966 -2.6073 -1.4303 11 6 2.7143 -0.7296 -2.4145 12 6 2.8612 -1.3443 -3.7826 13 1 2.7069 -2.4047 -3.9176 14 6 3.1925 -0.5530 -4.8620 15 7 3.3202 -1.0893 -6.0560 16 14 3.4601 1.2810 -4.6285 17 1 4.8894 1.5371 -4.3180 18 1 3.0879 1.9982 -5.8744 19 1 2.6155 1.7656 -3.5072 20 6 0.9775 -2.4016 -1.7590 21 6 0.9352 -3.8442 -2.2671 22 6 0.4293 -3.5130 -0.8616 23 1 -0.3634 0.0005 1.0276 24 1 -0.3632 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 4.2358 1.3431 0.7356 27 1 4.1234 0.8500 -0.9831 28 1 3.8260 -0.8468 1.5161 29 1 4.4753 -1.3044 -0.0941 30 1 1.9287 0.0257 -2.4380 31 1 3.6561 -0.2652 -2.1219 32 1 3.5537 -0.5327 -6.8153 33 1 0.2614 -1.6976 -2.1826 34 1 0.1911 -4.0892 -3.0250 35 1 1.8824 -4.3771 -2.3486 36 1 1.0438 -3.8281 -0.0182 37 1 -0.6476 -3.5401 -0.6950 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260354145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:31 Heat of formation + Delta-G solvation = -12.925657 kcal Electronic energy + Delta-G solvation = -18051.827391 eV Core-core repulsion = 15408.783024 eV Total energy + Delta-G solvation = -2643.044367 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.49732 -37.58489 -35.71768 -33.18324 -32.43498 -30.76276 -27.87855 -26.33648 -24.61391 -22.12221 -21.55590 -20.92735 -19.82676 -18.51512 -17.08962 -16.23631 -15.62970 -15.23977 -14.77252 -14.39131 -14.03289 -13.42958 -13.28277 -12.91035 -12.63904 -12.52700 -12.28997 -11.91420 -11.59480 -11.50465 -11.25025 -11.01572 -10.95647 -10.70042 -10.23654 -9.82360 -9.76745 -9.69764 -9.41225 -9.35415 -9.00721 -8.51560 -8.18602 -6.02684 -3.99386 2.99245 3.30920 3.40692 3.41670 3.49085 4.30747 4.47238 4.66133 4.73749 5.09090 5.18558 5.29913 5.37496 5.44804 5.46329 5.56160 5.61318 5.76009 5.88144 5.92469 5.95539 5.99412 6.07819 6.10112 6.28906 6.30841 6.39105 6.55486 6.75520 6.79855 6.97978 7.20839 7.38449 7.52588 7.80423 8.55442 8.57266 9.04721 9.60979 11.10488 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.012591 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.141301 B = 2223.363614 C = 3160.277016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.606 5.606 3 C 0.521 3.479 4 O -0.547 6.547 5 C -0.161 4.161 6 C -0.126 4.126 7 C 0.135 3.865 8 H 0.080 0.920 9 C -0.055 4.055 10 H 0.077 0.923 11 C -0.008 4.008 12 C -0.511 4.511 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.904 5.904 16 Si 0.865 3.135 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.263 1.263 20 C -0.112 4.112 21 C -0.166 4.166 22 C -0.203 4.203 23 H 0.047 0.953 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.093 0.907 27 H 0.113 0.887 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.374 -2.911 13.600 14.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.339 5.339 3 C 0.310 3.690 4 O -0.425 6.425 5 C -0.201 4.201 6 C -0.164 4.164 7 C 0.031 3.969 8 H 0.098 0.902 9 C -0.075 4.075 10 H 0.095 0.905 11 C -0.045 4.045 12 C -0.549 4.549 13 H 0.094 0.906 14 C -0.132 4.132 15 N -0.543 5.543 16 Si 0.692 3.308 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.188 1.188 20 C -0.131 4.131 21 C -0.203 4.203 22 C -0.240 4.240 23 H 0.066 0.934 24 H 0.087 0.913 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.131 0.869 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.662 -2.277 13.415 13.864 hybrid contribution 0.072 0.894 -0.262 0.935 sum -2.590 -1.383 13.152 13.476 Atomic orbital electron populations 1.21581 0.78751 1.03506 1.00894 1.48066 1.06084 1.07091 1.72705 1.20891 0.89405 0.84231 0.74507 1.90660 1.79048 1.21337 1.51499 1.22511 0.94879 0.97544 1.05125 1.22612 0.97109 0.95393 1.01251 1.21894 0.90073 0.86595 0.98336 0.90205 1.21128 0.94803 0.98935 0.92612 0.90490 1.19747 0.95940 0.94113 0.94749 1.21116 1.46641 0.96774 0.90350 0.90555 1.24974 0.95023 0.97947 0.95250 1.69898 1.49157 1.35763 0.99493 0.87004 0.79043 0.86633 0.78091 1.20251 1.21430 1.18764 1.22125 0.98357 0.90953 1.01618 1.22838 1.02462 0.99440 0.95535 1.23015 1.00074 1.06382 0.94501 0.93397 0.91295 0.90258 0.88852 0.86932 0.90610 0.88758 0.96443 0.96582 0.92870 0.88278 0.89551 0.89059 0.89533 0.89823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.36 10.74 59.85 0.64 2.00 16 2 N -0.61 -9.87 2.29 -172.65 -0.39 -10.27 16 3 C 0.52 9.71 7.03 -10.77 -0.08 9.64 16 4 O -0.55 -12.15 17.60 5.56 0.10 -12.05 16 5 C -0.16 -2.47 6.07 -26.74 -0.16 -2.63 16 6 C -0.13 -1.60 6.33 -25.10 -0.16 -1.76 16 7 C 0.13 1.93 2.98 -67.01 -0.20 1.73 16 8 H 0.08 0.98 7.11 -51.93 -0.37 0.61 16 9 C -0.06 -0.96 1.72 -90.62 -0.16 -1.12 16 10 H 0.08 1.33 7.83 -51.93 -0.41 0.93 16 11 C -0.01 -0.19 2.30 -27.88 -0.06 -0.25 16 12 C -0.51 -13.76 9.14 -34.44 -0.31 -14.08 16 13 H 0.08 2.19 7.49 -52.49 -0.39 1.80 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 16 Si 0.86 22.03 27.47 -169.99 -4.67 17.36 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.26 -6.76 6.54 56.52 0.37 -6.39 16 20 C -0.11 -1.87 2.76 -90.62 -0.25 -2.12 16 21 C -0.17 -2.63 9.83 -26.73 -0.26 -2.89 16 22 C -0.20 -2.67 9.44 -26.73 -0.25 -2.92 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.07 1.08 7.93 -51.93 -0.41 0.67 16 25 H 0.08 1.05 5.33 -51.93 -0.28 0.77 16 26 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.11 1.92 6.03 -51.93 -0.31 1.61 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.15 7.84 -51.93 -0.41 0.75 16 30 H 0.02 0.42 6.27 -51.93 -0.33 0.10 16 31 H 0.02 0.36 4.42 -51.93 -0.23 0.13 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.10 1.82 7.20 -51.93 -0.37 1.44 16 34 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 35 H 0.09 1.47 8.05 -51.93 -0.42 1.06 16 36 H 0.09 1.03 7.62 -51.93 -0.40 0.63 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 288.03 15.07 4.34 4.34 Total: -1.00 -32.41 288.03 -6.80 -39.22 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -5.60 Total: 0.70 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.35 Total: -12.53 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.38 Total: -37.04 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.10 Total: -12.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -32.41 -6.80 -39.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.290 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds