Wall clock time and date at job start Mon Mar 30 2020 03:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34621 * 124.46852 * 2 1 4 4 O 1.21277 * 124.91214 * 359.55995 * 3 2 1 5 5 C 1.51284 * 110.14912 * 179.53195 * 3 2 1 6 6 C 1.54632 * 104.19276 * 343.77249 * 5 3 2 7 7 C 1.46760 * 124.34634 * 179.97438 * 2 1 3 8 8 H 1.09000 * 110.25330 * 316.12857 * 7 2 1 9 9 C 1.53001 * 110.24313 * 78.04038 * 7 2 1 10 10 H 1.09005 * 109.47002 * 170.15240 * 9 7 2 11 11 C 1.52996 * 109.47473 * 50.15037 * 9 7 2 12 12 C 1.50702 * 109.47033 * 176.06767 * 11 9 7 13 13 H 1.07998 * 120.00318 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99728 * 180.02562 * 12 11 9 15 15 N 1.31512 * 120.00301 * 180.02562 * 14 12 11 16 16 Si 1.86809 * 120.00126 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47093 * 89.99781 * 16 14 12 18 18 H 1.48495 * 109.47194 * 210.00147 * 16 14 12 19 19 H 1.48503 * 109.46622 * 330.00039 * 16 14 12 20 20 C 1.52998 * 109.47026 * 290.15219 * 9 7 2 21 21 C 1.53004 * 117.51770 * 231.28700 * 20 9 7 22 22 C 1.53003 * 60.00116 * 107.47976 * 21 20 9 23 23 H 1.08997 * 109.47567 * 270.02552 * 1 2 3 24 24 H 1.09000 * 109.46575 * 30.02284 * 1 2 3 25 25 H 1.08996 * 109.47323 * 150.02209 * 1 2 3 26 26 H 1.08991 * 110.48859 * 225.09380 * 5 3 2 27 27 H 1.08996 * 110.48211 * 102.44538 * 5 3 2 28 28 H 1.09001 * 110.96629 * 266.67509 * 6 5 3 29 29 H 1.09006 * 110.96873 * 142.91454 * 6 5 3 30 30 H 1.08998 * 109.47088 * 296.07108 * 11 9 7 31 31 H 1.09004 * 109.47169 * 56.07061 * 11 9 7 32 32 H 0.96994 * 120.00760 * 180.02562 * 15 14 12 33 33 H 1.08993 * 115.55405 * 85.58398 * 20 9 7 34 34 H 1.09003 * 117.50032 * 214.96590 * 21 20 9 35 35 H 1.08994 * 117.50089 * 359.97438 * 21 20 9 36 36 H 1.09002 * 117.49837 * 252.50946 * 22 21 20 37 37 H 1.09003 * 117.49550 * 107.49136 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2269 1.1099 0.0000 4 8 1.7999 2.2449 -0.0076 5 6 3.6927 0.7357 0.0116 6 6 3.7012 -0.7508 0.4375 7 6 2.2930 -1.2117 0.0005 8 1 1.8973 -1.9388 0.7096 9 6 2.3461 -1.8173 -1.4035 10 1 3.0966 -2.6073 -1.4303 11 6 2.7143 -0.7296 -2.4145 12 6 2.8612 -1.3443 -3.7826 13 1 2.7069 -2.4047 -3.9176 14 6 3.1925 -0.5530 -4.8620 15 7 3.3202 -1.0893 -6.0560 16 14 3.4601 1.2810 -4.6285 17 1 4.8894 1.5371 -4.3180 18 1 3.0879 1.9982 -5.8744 19 1 2.6155 1.7656 -3.5072 20 6 0.9775 -2.4016 -1.7590 21 6 0.9352 -3.8442 -2.2671 22 6 0.4293 -3.5130 -0.8616 23 1 -0.3634 0.0005 1.0276 24 1 -0.3632 0.8898 -0.5142 25 1 -0.3634 -0.8901 -0.5135 26 1 4.2358 1.3431 0.7356 27 1 4.1234 0.8500 -0.9831 28 1 3.8260 -0.8468 1.5161 29 1 4.4753 -1.3044 -0.0941 30 1 1.9287 0.0257 -2.4380 31 1 3.6561 -0.2652 -2.1219 32 1 3.5537 -0.5327 -6.8153 33 1 0.2614 -1.6976 -2.1826 34 1 0.1911 -4.0892 -3.0250 35 1 1.8824 -4.3771 -2.3486 36 1 1.0438 -3.8281 -0.0182 37 1 -0.6476 -3.5401 -0.6950 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260354145.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:30 Heat of formation + Delta-G solvation = -33.107842 kcal Electronic energy + Delta-G solvation = -18052.702557 eV Core-core repulsion = 15408.783024 eV Total energy + Delta-G solvation = -2643.919532 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.79194 -38.96625 -37.03229 -35.10939 -33.79046 -32.42001 -29.43930 -27.49852 -26.19019 -23.46857 -23.06649 -22.12089 -21.21175 -19.83128 -19.05790 -17.61176 -17.09341 -16.64117 -16.09094 -15.95729 -15.70511 -14.80367 -14.67534 -14.46752 -14.23086 -13.87112 -13.66060 -13.20765 -13.16099 -12.95284 -12.68148 -12.51311 -12.23845 -12.18632 -11.82763 -11.58755 -11.44350 -11.20612 -10.86317 -10.80149 -10.65826 -10.61070 -9.47800 -8.26683 -6.24316 1.24745 1.31257 1.41183 1.59764 2.20969 2.32091 3.06657 3.13231 3.45262 3.62789 3.96927 4.03502 4.18962 4.22026 4.31313 4.37901 4.50404 4.57629 4.65301 4.72477 4.83966 4.89887 4.90831 4.91851 5.09694 5.13304 5.20388 5.24891 5.38034 5.40627 5.54985 5.62172 5.73061 5.77713 6.23162 6.37578 6.85512 7.20889 7.38498 8.89916 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018000 B = 0.012591 C = 0.008858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.141301 B = 2223.363614 C = 3160.277016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.605 5.605 3 C 0.504 3.496 4 O -0.596 6.596 5 C -0.163 4.163 6 C -0.116 4.116 7 C 0.136 3.864 8 H 0.119 0.881 9 C -0.050 4.050 10 H 0.081 0.919 11 C -0.002 4.002 12 C -0.500 4.500 13 H 0.050 0.950 14 C 0.013 3.987 15 N -0.949 5.949 16 Si 0.922 3.078 17 H -0.260 1.260 18 H -0.291 1.291 19 H -0.271 1.271 20 C -0.138 4.138 21 C -0.187 4.187 22 C -0.155 4.155 23 H 0.076 0.924 24 H 0.045 0.955 25 H 0.090 0.910 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.102 0.898 30 H -0.005 1.005 31 H 0.024 0.976 32 H 0.261 0.739 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.122 -3.809 16.608 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.336 5.336 3 C 0.293 3.707 4 O -0.478 6.478 5 C -0.202 4.202 6 C -0.154 4.154 7 C 0.033 3.967 8 H 0.137 0.863 9 C -0.069 4.069 10 H 0.100 0.900 11 C -0.039 4.039 12 C -0.539 4.539 13 H 0.068 0.932 14 C -0.183 4.183 15 N -0.592 5.592 16 Si 0.749 3.251 17 H -0.185 1.185 18 H -0.217 1.217 19 H -0.196 1.196 20 C -0.156 4.156 21 C -0.225 4.225 22 C -0.191 4.191 23 H 0.095 0.905 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.135 0.865 27 H 0.109 0.891 28 H 0.133 0.867 29 H 0.120 0.880 30 H 0.014 0.986 31 H 0.042 0.958 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.132 0.868 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.407 -3.212 16.438 16.921 hybrid contribution -0.072 1.090 -1.235 1.649 sum -2.479 -2.122 15.203 15.550 Atomic orbital electron populations 1.21718 0.78013 1.02927 1.02528 1.48276 1.06901 1.07236 1.71198 1.21543 0.91071 0.84036 0.74012 1.90621 1.80118 1.23244 1.53848 1.22549 0.92736 1.00199 1.04739 1.22718 0.96013 0.92892 1.03756 1.22054 0.91291 0.86423 0.96894 0.86334 1.21023 0.95251 0.97427 0.93220 0.90033 1.19644 0.95549 0.94998 0.93726 1.21496 1.44129 0.95690 0.92540 0.93176 1.25700 0.95715 1.01718 0.95211 1.70025 1.51571 1.37180 1.00380 0.86086 0.79550 0.82178 0.77326 1.18512 1.21723 1.19564 1.22007 0.97977 0.91076 1.04541 1.22863 1.02471 0.99060 0.98057 1.23097 1.01532 1.01232 0.93268 0.90527 0.93636 0.89148 0.86488 0.89075 0.86734 0.87983 0.98645 0.95808 0.92954 0.90764 0.90459 0.89667 0.86830 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.41 10.74 127.77 1.37 3.78 16 2 N -0.60 -18.32 2.29 -818.61 -1.87 -20.20 16 3 C 0.50 18.15 7.03 87.87 0.62 18.77 16 4 O -0.60 -26.58 17.60 -3.02 -0.05 -26.64 16 5 C -0.16 -4.61 6.07 30.59 0.19 -4.43 16 6 C -0.12 -2.45 6.33 31.65 0.20 -2.25 16 7 C 0.14 3.38 2.98 45.45 0.14 3.52 16 8 H 0.12 2.15 7.11 -2.39 -0.02 2.13 16 9 C -0.05 -1.63 1.72 -10.80 -0.02 -1.65 16 10 H 0.08 2.62 7.83 -2.38 -0.02 2.60 16 11 C 0.00 -0.09 2.30 29.85 0.07 -0.02 16 12 C -0.50 -27.43 9.14 25.60 0.23 -27.19 16 13 H 0.05 2.96 7.49 -2.91 -0.02 2.94 16 14 C 0.01 0.75 5.47 84.66 0.46 1.21 16 15 N -0.95 -59.44 13.96 21.45 0.30 -59.14 16 16 Si 0.92 46.51 27.47 68.60 1.88 48.39 16 17 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 19 H -0.27 -13.87 6.54 99.48 0.65 -13.22 16 20 C -0.14 -4.37 2.76 -10.79 -0.03 -4.40 16 21 C -0.19 -5.73 9.83 30.60 0.30 -5.43 16 22 C -0.15 -3.45 9.44 30.60 0.29 -3.16 16 23 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.04 1.42 7.93 -2.39 -0.02 1.40 16 25 H 0.09 2.20 5.33 -2.39 -0.01 2.19 16 26 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.09 2.99 6.03 -2.39 -0.01 2.98 16 28 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.10 2.05 7.84 -2.38 -0.02 2.03 16 30 H 0.00 -0.24 6.27 -2.39 -0.01 -0.25 16 31 H 0.02 1.03 4.42 -2.38 -0.01 1.02 16 32 H 0.26 15.54 8.31 -92.71 -0.77 14.76 16 33 H 0.07 2.72 7.20 -2.39 -0.02 2.70 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.08 2.68 8.05 -2.39 -0.02 2.66 16 36 H 0.11 1.99 7.62 -2.39 -0.02 1.98 16 37 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -73.32 288.03 5.07 -68.25 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.99 Total: 10.58 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: 3.82 Total: -21.25 kcal Atomic # 7 Polarization: -77.76 SS G_CDS: -1.57 Total: -79.34 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.05 Total: -26.64 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.39 kcal Total: -73.32 5.07 -68.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260354145.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.138 kcal (2) G-P(sol) polarization free energy of solvation -73.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds