Wall clock time and date at job start Mon Mar 30 2020 03:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46763 * 124.34806 * 2 1 4 4 C 1.54480 * 105.47393 * 162.98185 * 3 2 1 5 5 H 1.09001 * 110.96462 * 267.29191 * 4 3 2 6 6 C 1.53002 * 110.96977 * 143.53270 * 4 3 2 7 7 H 1.09006 * 109.46989 * 299.99734 * 6 4 3 8 8 C 1.52994 * 109.47060 * 59.99789 * 6 4 3 9 9 C 1.50708 * 109.47135 * 185.00041 * 8 6 4 10 10 H 1.07994 * 119.99657 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00113 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00103 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46883 * 90.00191 * 13 11 9 15 15 H 1.48496 * 109.47216 * 210.00033 * 13 11 9 16 16 H 1.48498 * 109.47471 * 330.00291 * 13 11 9 17 17 C 1.53001 * 109.47121 * 179.97438 * 6 4 3 18 18 C 1.53003 * 117.49584 * 128.74448 * 17 6 4 19 19 C 1.53001 * 117.49824 * 60.08730 * 17 6 4 20 20 C 1.54629 * 101.76319 * 25.41207 * 4 3 2 21 21 C 1.34415 * 124.35240 * 179.69552 * 2 1 3 22 22 O 1.21285 * 124.93848 * 0.38955 * 21 2 1 23 23 H 1.08999 * 109.46892 * 90.00728 * 1 2 3 24 24 H 1.09000 * 109.46803 * 209.99902 * 1 2 3 25 25 H 1.09000 * 109.47214 * 330.00695 * 1 2 3 26 26 H 1.09006 * 110.24107 * 281.97891 * 3 2 1 27 27 H 1.08996 * 110.24614 * 43.88621 * 3 2 1 28 28 H 1.09003 * 109.47606 * 304.99930 * 8 6 4 29 29 H 1.08997 * 109.47420 * 65.00333 * 8 6 4 30 30 H 0.97004 * 120.00225 * 180.02562 * 12 11 9 31 31 H 1.08996 * 115.54758 * 274.41361 * 17 6 4 32 32 H 1.08996 * 117.50449 * 359.97438 * 18 17 6 33 33 H 1.09001 * 117.48995 * 145.02214 * 18 17 6 34 34 H 1.08996 * 117.49744 * 214.97907 * 19 17 6 35 35 H 1.09004 * 117.49912 * 359.97438 * 19 17 6 36 36 H 1.09000 * 110.48716 * 93.88350 * 20 4 3 37 37 H 1.09002 * 110.48668 * 216.39059 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7488 0.4357 5 1 3.8268 0.8450 1.5142 6 6 4.7880 1.5240 -0.3115 7 1 4.6813 1.3576 -1.3835 8 6 4.6473 3.0175 -0.0108 9 6 5.6380 3.7926 -0.8409 10 1 6.3013 3.2720 -1.5157 11 6 5.6976 5.1662 -0.7388 12 7 6.5618 5.8426 -1.4636 13 14 4.5498 6.0668 0.4278 14 1 5.1941 6.1883 1.7603 15 1 4.2622 7.4214 -0.1082 16 1 3.2809 5.3066 0.5590 17 6 6.1655 1.0398 0.1456 18 6 7.1676 0.6358 -0.9377 19 6 6.5030 -0.4367 -0.0710 20 6 3.6898 -0.7378 0.0103 21 6 2.2235 -1.1097 0.0059 22 8 1.7947 -2.2442 0.0052 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 2.3307 1.6429 -1.0005 27 1 1.8974 1.9390 0.7089 28 1 3.6360 3.3435 -0.2540 29 1 4.8419 3.1952 1.0468 30 1 6.6040 6.8091 -1.3915 31 1 6.5591 1.5199 1.0415 32 1 6.8455 0.7146 -1.9760 33 1 8.2205 0.8498 -0.7541 34 1 7.1190 -0.9279 0.6823 35 1 5.7435 -1.0632 -0.5388 36 1 4.1195 -0.8530 -0.9848 37 1 4.2346 -1.3455 0.7327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260404392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:53 Heat of formation + Delta-G solvation = -16.744541 kcal Electronic energy + Delta-G solvation = -17337.988107 eV Core-core repulsion = 14694.778141 eV Total energy + Delta-G solvation = -2643.209966 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.42847 -37.85684 -35.98673 -33.52347 -32.61640 -30.66262 -27.25237 -26.97638 -24.96260 -21.86988 -21.58976 -20.99267 -19.62266 -19.00776 -16.81128 -16.52356 -15.90569 -15.40750 -14.81449 -14.49437 -14.10196 -13.60131 -13.52226 -12.97078 -12.66501 -12.48402 -12.33461 -12.17494 -11.92980 -11.82845 -11.21753 -10.91725 -10.77263 -10.66687 -10.33978 -10.01478 -9.84645 -9.61439 -9.55788 -9.11114 -8.99156 -8.63675 -8.55578 -6.05175 -4.02419 2.70676 3.13345 3.26878 3.35552 3.35683 4.31691 4.42211 4.59471 4.68370 4.95902 5.21266 5.25047 5.29416 5.36204 5.37799 5.52435 5.57199 5.64697 5.67331 5.76245 5.91587 5.94985 6.06277 6.19401 6.21788 6.44073 6.47196 6.58158 6.62726 6.76300 6.88618 7.17065 7.19259 7.33496 7.76348 8.27994 8.53712 9.02960 9.57371 11.08243 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023225 B = 0.007960 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.294134 B = 3516.704550 C = 4500.853393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.625 5.625 3 C 0.104 3.896 4 C -0.091 4.091 5 H 0.088 0.912 6 C -0.033 4.033 7 H 0.069 0.931 8 C -0.008 4.008 9 C -0.512 4.512 10 H 0.077 0.923 11 C 0.066 3.934 12 N -0.904 5.904 13 Si 0.875 3.125 14 H -0.279 1.279 15 H -0.290 1.290 16 H -0.266 1.266 17 C -0.112 4.112 18 C -0.168 4.168 19 C -0.213 4.213 20 C -0.149 4.149 21 C 0.514 3.486 22 O -0.547 6.547 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.018 0.982 29 H 0.013 0.987 30 H 0.262 0.738 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 -9.332 3.988 12.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.359 5.359 3 C -0.018 4.018 4 C -0.110 4.110 5 H 0.106 0.894 6 C -0.052 4.052 7 H 0.087 0.913 8 C -0.046 4.046 9 C -0.550 4.550 10 H 0.095 0.905 11 C -0.135 4.135 12 N -0.543 5.543 13 Si 0.702 3.298 14 H -0.205 1.205 15 H -0.216 1.216 16 H -0.191 1.191 17 C -0.131 4.131 18 C -0.205 4.205 19 C -0.250 4.250 20 C -0.189 4.189 21 C 0.303 3.697 22 O -0.425 6.425 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.072 0.928 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.115 0.885 36 H 0.125 0.875 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.336 -9.729 3.944 12.808 hybrid contribution -0.491 0.868 0.582 1.155 sum -7.828 -8.862 4.526 12.661 Atomic orbital electron populations 1.21506 0.78678 1.02768 1.01705 1.48301 1.06342 1.08019 1.73247 1.22331 0.90415 0.86318 1.02744 1.22276 0.94076 0.93029 1.01594 0.89392 1.20707 0.89833 0.96422 0.98204 0.91275 1.19664 0.97395 0.90631 0.96881 1.21119 1.18794 0.91341 1.23701 0.90504 1.25017 0.95236 0.97723 0.95518 1.69908 1.36194 1.07320 1.40874 0.86868 0.82129 0.79224 0.81544 1.20459 1.21573 1.19086 1.22083 0.96274 0.94289 1.00413 1.22837 0.98179 1.02734 0.96712 1.23373 1.04435 0.92931 1.04228 1.22698 0.93203 0.98351 1.04639 1.21197 0.89872 0.84088 0.74583 1.90674 1.79129 1.21362 1.51383 0.92762 0.91031 0.91133 0.90250 0.90388 0.96384 0.96850 0.92848 0.88172 0.89173 0.89586 0.89851 0.88476 0.87542 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.05 10.96 59.85 0.66 1.71 16 2 N -0.62 -8.53 3.33 -180.29 -0.60 -9.13 16 3 C 0.10 1.41 5.76 -3.12 -0.02 1.39 16 4 C -0.09 -1.27 2.67 -88.99 -0.24 -1.51 16 5 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 6 C -0.03 -0.56 1.42 -90.62 -0.13 -0.68 16 7 H 0.07 1.22 7.82 -51.93 -0.41 0.81 16 8 C -0.01 -0.18 3.36 -27.88 -0.09 -0.27 16 9 C -0.51 -13.36 9.16 -34.44 -0.32 -13.68 16 10 H 0.08 2.17 7.58 -52.49 -0.40 1.78 16 11 C 0.07 1.82 5.47 -17.82 -0.10 1.72 16 12 N -0.90 -26.88 13.96 55.43 0.77 -26.10 16 13 Si 0.87 20.61 27.47 -169.99 -4.67 15.94 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -5.88 6.54 56.52 0.37 -5.51 16 17 C -0.11 -1.85 4.50 -90.62 -0.41 -2.26 16 18 C -0.17 -2.70 9.90 -26.69 -0.26 -2.96 16 19 C -0.21 -2.92 8.95 -26.69 -0.24 -3.16 16 20 C -0.15 -1.99 4.32 -26.75 -0.12 -2.10 16 21 C 0.51 7.93 8.02 -10.87 -0.09 7.84 16 22 O -0.55 -10.18 17.59 5.55 0.10 -10.08 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.11 7.72 -51.93 -0.40 0.71 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 28 H 0.02 0.37 6.07 -51.93 -0.32 0.06 16 29 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.10 1.75 8.11 -51.93 -0.42 1.33 16 32 H 0.09 1.49 8.05 -51.93 -0.42 1.07 16 33 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.10 1.23 4.70 -51.93 -0.24 0.99 16 36 H 0.11 1.38 6.43 -51.93 -0.33 1.05 16 37 H 0.10 1.26 7.38 -51.93 -0.38 0.88 16 LS Contribution 294.11 15.07 4.43 4.43 Total: -1.00 -30.69 294.11 -7.14 -37.83 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -5.83 Total: 1.07 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -1.35 Total: -13.96 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.17 Total: -35.23 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.10 Total: -10.08 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.69 -7.14 -37.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.084 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds