Wall clock time and date at job start Mon Mar 30 2020 03:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46763 * 124.34806 * 2 1 4 4 C 1.54480 * 105.47393 * 162.98185 * 3 2 1 5 5 H 1.09001 * 110.96462 * 267.29191 * 4 3 2 6 6 C 1.53002 * 110.96977 * 143.53270 * 4 3 2 7 7 H 1.09006 * 109.46989 * 299.99734 * 6 4 3 8 8 C 1.52994 * 109.47060 * 59.99789 * 6 4 3 9 9 C 1.50708 * 109.47135 * 185.00041 * 8 6 4 10 10 H 1.07994 * 119.99657 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00113 * 180.02562 * 9 8 6 12 12 N 1.31514 * 120.00089 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 120.00103 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.46883 * 90.00191 * 13 11 9 15 15 H 1.48496 * 109.47216 * 210.00033 * 13 11 9 16 16 H 1.48498 * 109.47471 * 330.00291 * 13 11 9 17 17 C 1.53001 * 109.47121 * 179.97438 * 6 4 3 18 18 C 1.53003 * 117.49584 * 128.74448 * 17 6 4 19 19 C 1.53001 * 117.49824 * 60.08730 * 17 6 4 20 20 C 1.54629 * 101.76319 * 25.41207 * 4 3 2 21 21 C 1.34415 * 124.35240 * 179.69552 * 2 1 3 22 22 O 1.21285 * 124.93848 * 0.38955 * 21 2 1 23 23 H 1.08999 * 109.46892 * 90.00728 * 1 2 3 24 24 H 1.09000 * 109.46803 * 209.99902 * 1 2 3 25 25 H 1.09000 * 109.47214 * 330.00695 * 1 2 3 26 26 H 1.09006 * 110.24107 * 281.97891 * 3 2 1 27 27 H 1.08996 * 110.24614 * 43.88621 * 3 2 1 28 28 H 1.09003 * 109.47606 * 304.99930 * 8 6 4 29 29 H 1.08997 * 109.47420 * 65.00333 * 8 6 4 30 30 H 0.97004 * 120.00225 * 180.02562 * 12 11 9 31 31 H 1.08996 * 115.54758 * 274.41361 * 17 6 4 32 32 H 1.08996 * 117.50449 * 359.97438 * 18 17 6 33 33 H 1.09001 * 117.48995 * 145.02214 * 18 17 6 34 34 H 1.08996 * 117.49744 * 214.97907 * 19 17 6 35 35 H 1.09004 * 117.49912 * 359.97438 * 19 17 6 36 36 H 1.09000 * 110.48716 * 93.88350 * 20 4 3 37 37 H 1.09002 * 110.48668 * 216.39059 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7010 0.7488 0.4357 5 1 3.8268 0.8450 1.5142 6 6 4.7880 1.5240 -0.3115 7 1 4.6813 1.3576 -1.3835 8 6 4.6473 3.0175 -0.0108 9 6 5.6380 3.7926 -0.8409 10 1 6.3013 3.2720 -1.5157 11 6 5.6976 5.1662 -0.7388 12 7 6.5618 5.8426 -1.4636 13 14 4.5498 6.0668 0.4278 14 1 5.1941 6.1883 1.7603 15 1 4.2622 7.4214 -0.1082 16 1 3.2809 5.3066 0.5590 17 6 6.1655 1.0398 0.1456 18 6 7.1676 0.6358 -0.9377 19 6 6.5030 -0.4367 -0.0710 20 6 3.6898 -0.7378 0.0103 21 6 2.2235 -1.1097 0.0059 22 8 1.7947 -2.2442 0.0052 23 1 -0.3633 -0.0001 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5137 26 1 2.3307 1.6429 -1.0005 27 1 1.8974 1.9390 0.7089 28 1 3.6360 3.3435 -0.2540 29 1 4.8419 3.1952 1.0468 30 1 6.6040 6.8091 -1.3915 31 1 6.5591 1.5199 1.0415 32 1 6.8455 0.7146 -1.9760 33 1 8.2205 0.8498 -0.7541 34 1 7.1190 -0.9279 0.6823 35 1 5.7435 -1.0632 -0.5388 36 1 4.1195 -0.8530 -0.9848 37 1 4.2346 -1.3455 0.7327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260404392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:53 Heat of formation + Delta-G solvation = -35.199528 kcal Electronic energy + Delta-G solvation = -17338.788376 eV Core-core repulsion = 14694.778141 eV Total energy + Delta-G solvation = -2644.010235 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.57982 -39.15156 -37.18774 -35.16728 -34.09911 -32.21432 -28.62584 -28.07756 -26.32213 -23.31888 -23.06620 -22.16445 -20.86579 -20.24031 -18.74836 -17.68884 -17.07471 -16.62858 -16.27002 -15.84765 -15.66667 -14.82548 -14.62768 -14.46535 -14.15830 -13.88036 -13.52803 -13.34224 -13.18038 -13.13922 -12.74079 -12.32690 -12.18442 -11.97389 -11.73318 -11.64498 -11.39609 -11.32313 -10.83698 -10.66834 -10.58120 -10.38153 -9.70845 -8.16290 -6.17212 1.42318 1.43627 1.53819 1.54494 2.11336 2.44915 3.08187 3.21005 3.47918 3.57930 3.77578 4.10987 4.16778 4.30038 4.33023 4.40921 4.49114 4.59857 4.69348 4.73363 4.75449 4.83714 4.91165 4.93879 4.99711 5.16116 5.23901 5.26204 5.39044 5.41743 5.54698 5.64721 5.77027 5.79722 6.09311 6.45766 6.93112 7.14411 7.45975 9.00453 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023225 B = 0.007960 C = 0.006220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.294134 B = 3516.704550 C = 4500.853393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.622 5.622 3 C 0.103 3.897 4 C -0.082 4.082 5 H 0.101 0.899 6 C -0.023 4.023 7 H 0.057 0.943 8 C -0.007 4.007 9 C -0.507 4.507 10 H 0.039 0.961 11 C -0.001 4.001 12 N -0.958 5.958 13 Si 0.940 3.060 14 H -0.274 1.274 15 H -0.296 1.296 16 H -0.235 1.235 17 C -0.131 4.131 18 C -0.190 4.190 19 C -0.174 4.174 20 C -0.142 4.142 21 C 0.508 3.492 22 O -0.585 6.585 23 H 0.061 0.939 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.029 0.971 29 H 0.020 0.980 30 H 0.260 0.740 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.814 -10.106 5.649 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.355 5.355 3 C -0.019 4.019 4 C -0.101 4.101 5 H 0.119 0.881 6 C -0.042 4.042 7 H 0.075 0.925 8 C -0.044 4.044 9 C -0.545 4.545 10 H 0.057 0.943 11 C -0.196 4.196 12 N -0.601 5.601 13 Si 0.764 3.236 14 H -0.199 1.199 15 H -0.222 1.222 16 H -0.158 1.158 17 C -0.149 4.149 18 C -0.228 4.228 19 C -0.211 4.211 20 C -0.181 4.181 21 C 0.297 3.703 22 O -0.466 6.466 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.114 0.886 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.047 0.953 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.103 -10.508 5.613 14.993 hybrid contribution 0.109 1.095 -0.013 1.101 sum -8.994 -9.413 5.599 14.172 Atomic orbital electron populations 1.21717 0.77173 1.03826 1.02548 1.48422 1.07428 1.07535 1.72069 1.22355 0.90155 0.86457 1.02922 1.22128 0.93194 0.92933 1.01814 0.88066 1.20495 0.91353 0.94339 0.97993 0.92458 1.19630 0.96103 0.92663 0.96009 1.21490 1.18584 0.91580 1.22863 0.94262 1.25958 0.97131 0.98978 0.97564 1.70086 1.38904 1.07498 1.43576 0.85815 0.81133 0.77671 0.78969 1.19944 1.22233 1.15778 1.22061 0.96029 0.96874 0.99979 1.22854 0.98072 1.05403 0.96427 1.23420 1.03502 0.91323 1.02827 1.22670 0.92295 0.97847 1.05287 1.21478 0.90766 0.83871 0.74161 1.90657 1.79817 1.22775 1.53361 0.92055 0.91453 0.88629 0.90791 0.88749 0.95290 0.96158 0.93112 0.89219 0.90326 0.90096 0.87886 0.86969 0.87166 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.70 10.96 127.77 1.40 3.10 16 2 N -0.62 -15.22 3.33 -842.90 -2.81 -18.03 16 3 C 0.10 2.45 5.76 86.83 0.50 2.95 16 4 C -0.08 -2.03 2.67 -9.74 -0.03 -2.06 16 5 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 6 C -0.02 -0.74 1.42 -10.79 -0.02 -0.75 16 7 H 0.06 1.98 7.82 -2.38 -0.02 1.96 16 8 C -0.01 -0.27 3.36 29.85 0.10 -0.17 16 9 C -0.51 -26.74 9.16 25.60 0.23 -26.51 16 10 H 0.04 2.31 7.58 -2.91 -0.02 2.29 16 11 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 12 N -0.96 -58.73 13.96 21.44 0.30 -58.43 16 13 Si 0.94 41.74 27.47 68.60 1.88 43.63 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 15 H -0.30 -13.36 7.11 99.48 0.71 -12.66 16 16 H -0.23 -9.15 6.54 99.48 0.65 -8.50 16 17 C -0.13 -4.16 4.50 -10.79 -0.05 -4.21 16 18 C -0.19 -6.12 9.90 30.62 0.30 -5.82 16 19 C -0.17 -4.35 8.95 30.62 0.27 -4.07 16 20 C -0.14 -3.36 4.32 30.58 0.13 -3.23 16 21 C 0.51 14.50 8.02 87.89 0.70 15.20 16 22 O -0.58 -20.87 17.59 -3.04 -0.05 -20.93 16 23 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.07 1.37 7.92 -2.39 -0.02 1.35 16 25 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 1.87 7.72 -2.38 -0.02 1.85 16 27 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.03 1.11 6.07 -2.39 -0.01 1.10 16 29 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 30 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 31 H 0.09 3.04 8.11 -2.39 -0.02 3.02 16 32 H 0.08 2.67 8.05 -2.39 -0.02 2.65 16 33 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.11 2.48 4.70 -2.38 -0.01 2.47 16 36 H 0.11 2.57 6.43 -2.39 -0.02 2.55 16 37 H 0.12 2.45 7.38 -2.39 -0.02 2.44 16 Total: -1.00 -67.35 294.11 4.33 -63.02 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.98 Total: 15.89 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 4.02 Total: -25.16 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -2.51 Total: -76.46 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.05 Total: -20.93 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.88 Total: 43.63 kcal Total: -67.35 4.33 -63.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260404392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.822 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds