Wall clock time and date at job start Mon Mar 30 2020 03:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 120.00301 * 2 1 4 4 N 1.34774 * 119.99762 * 179.97438 * 2 1 3 5 5 C 1.47429 * 125.65001 * 4.54418 * 4 2 1 6 6 C 1.54905 * 104.83405 * 204.09151 * 5 4 2 7 7 C 1.55411 * 101.66643 * 323.07489 * 6 5 4 8 8 C 1.47024 * 125.64772 * 184.49851 * 4 2 1 9 9 H 1.08997 * 109.88344 * 59.40874 * 8 4 2 10 10 C 1.53005 * 109.88345 * 298.39209 * 8 4 2 11 11 H 1.09005 * 109.46602 * 61.32709 * 10 8 4 12 12 C 1.50701 * 109.47100 * 301.32795 * 10 8 4 13 13 H 1.07997 * 119.99738 * 301.94173 * 12 10 8 14 14 C 1.37875 * 120.00237 * 122.22336 * 12 10 8 15 15 N 1.31512 * 120.00277 * 190.74220 * 14 12 10 16 16 Si 1.86805 * 119.99893 * 10.73739 * 14 12 10 17 17 H 1.48498 * 109.46832 * 89.00906 * 16 14 12 18 18 H 1.48496 * 109.47163 * 209.00907 * 16 14 12 19 19 H 1.48499 * 109.47165 * 329.00949 * 16 14 12 20 20 C 1.52998 * 109.47025 * 181.32295 * 10 8 4 21 21 C 1.53004 * 117.49766 * 244.17560 * 20 10 8 22 22 C 1.52998 * 117.49838 * 175.51811 * 20 10 8 23 23 H 1.08999 * 109.47556 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47079 * 299.99984 * 1 2 3 25 25 H 1.09003 * 109.47205 * 59.99834 * 1 2 3 26 26 H 1.08999 * 110.36553 * 322.93068 * 5 4 2 27 27 H 1.08996 * 110.36897 * 85.25273 * 5 4 2 28 28 H 1.09000 * 111.00830 * 81.05949 * 6 5 4 29 29 H 1.08995 * 111.00740 * 204.87452 * 6 5 4 30 30 H 1.09003 * 110.69325 * 277.04912 * 7 6 5 31 31 H 1.08991 * 110.85222 * 153.69962 * 7 6 5 32 32 H 0.96993 * 119.99904 * 179.97438 * 15 14 12 33 33 H 1.08992 * 115.55201 * 29.84572 * 20 10 8 34 34 H 1.08999 * 117.49828 * 0.02562 * 21 20 10 35 35 H 1.08997 * 117.49640 * 145.02059 * 21 20 10 36 36 H 1.08998 * 117.50129 * 214.98367 * 22 20 10 37 37 H 1.09004 * 117.49915 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5761 -2.5085 -0.0938 6 6 2.6147 -3.4581 0.5535 7 6 3.9544 -2.8248 0.0852 8 6 3.6407 -1.3138 0.0943 9 1 3.9994 -0.8663 1.0212 10 6 4.3097 -0.6363 -1.1034 11 1 4.0736 0.4278 -1.0975 12 6 3.8019 -1.2565 -2.3796 13 1 3.9183 -2.3168 -2.5482 14 6 3.1938 -0.4693 -3.3343 15 7 2.5650 -1.0288 -4.3448 16 14 3.2631 1.3921 -3.1925 17 1 4.4797 1.8958 -3.8791 18 1 2.0569 1.9821 -3.8265 19 1 3.3080 1.7780 -1.7592 20 6 5.8256 -0.8228 -1.0137 21 6 6.6826 0.4324 -0.8378 22 6 6.6713 -0.3054 -2.1790 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.6368 -2.5408 0.4582 27 1 1.4135 -2.7788 -1.1371 28 1 2.5358 -3.4409 1.6405 29 1 2.5068 -4.4735 0.1722 30 1 4.2082 -3.1600 -0.9205 31 1 4.7581 -3.0560 0.7842 32 1 2.1369 -0.4749 -5.0162 33 1 6.1586 -1.7333 -0.5156 34 1 6.1664 1.3910 -0.7857 35 1 7.5796 0.3475 -0.2244 36 1 7.5608 -0.8753 -2.4474 37 1 6.1476 0.1676 -3.0098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260409141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:32 Heat of formation + Delta-G solvation = -8.258303 kcal Electronic energy + Delta-G solvation = -18307.007498 eV Core-core repulsion = 15664.165523 eV Total energy + Delta-G solvation = -2642.841976 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50004 -37.14501 -36.03991 -32.51375 -31.41716 -30.32416 -28.58727 -26.38010 -23.45233 -22.05812 -21.49065 -20.90740 -18.85215 -18.04235 -17.02165 -16.13572 -15.65745 -14.76242 -14.27143 -14.06838 -13.64393 -13.39126 -12.88240 -12.65640 -12.30184 -12.25320 -12.05341 -11.80670 -11.55342 -11.03746 -10.91847 -10.62432 -10.56847 -10.45185 -10.24215 -10.02526 -9.46494 -9.37937 -9.03400 -8.90793 -8.61317 -8.17150 -7.64777 -5.98836 -3.94554 3.36844 3.46361 3.54355 3.77334 3.86052 4.60782 4.79895 5.11522 5.13484 5.35788 5.39481 5.53911 5.64565 5.72329 5.83020 5.89312 5.92887 5.97196 6.07297 6.10746 6.24603 6.26598 6.32970 6.46557 6.51006 6.57258 6.78848 6.87301 6.89714 7.04536 7.09735 7.44202 7.52653 7.90556 8.41519 8.60335 9.00430 9.06134 9.68977 11.12814 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.014311 C = 0.011245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.189508 B = 1956.084719 C = 2489.374333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.520 3.480 3 O -0.548 6.548 4 N -0.588 5.588 5 C 0.107 3.893 6 C -0.132 4.132 7 C -0.123 4.123 8 C 0.154 3.846 9 H 0.047 0.953 10 C 0.011 3.989 11 H 0.069 0.931 12 C -0.484 4.484 13 H 0.072 0.928 14 C 0.081 3.919 15 N -0.903 5.903 16 Si 0.833 3.167 17 H -0.284 1.284 18 H -0.297 1.297 19 H -0.217 1.217 20 C -0.119 4.119 21 C -0.207 4.207 22 C -0.168 4.168 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.259 0.741 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.975 -3.570 9.606 10.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.309 3.691 3 O -0.426 6.426 4 N -0.320 5.320 5 C -0.017 4.017 6 C -0.170 4.170 7 C -0.160 4.160 8 C 0.050 3.950 9 H 0.065 0.935 10 C -0.009 4.009 11 H 0.087 0.913 12 C -0.522 4.522 13 H 0.090 0.910 14 C -0.120 4.120 15 N -0.542 5.542 16 Si 0.661 3.339 17 H -0.211 1.211 18 H -0.224 1.224 19 H -0.141 1.141 20 C -0.138 4.138 21 C -0.244 4.244 22 C -0.205 4.205 23 H 0.092 0.908 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.823 -2.900 9.450 9.919 hybrid contribution -0.024 0.920 -0.345 0.983 sum -0.847 -1.980 9.104 9.356 Atomic orbital electron populations 1.21858 0.93208 1.03733 1.04138 1.20118 0.89649 0.82669 0.76645 1.90708 1.70397 1.30823 1.50721 1.48175 1.07560 1.05074 1.71178 1.22237 0.95509 0.82585 1.01340 1.22743 0.96169 0.98561 0.99544 1.22754 0.95816 0.94646 1.02833 1.21555 0.79892 0.95266 0.98261 0.93532 1.19502 0.87995 0.99212 0.94149 0.91283 1.20691 1.36239 0.95819 0.99422 0.91024 1.24932 0.94203 0.97622 0.95260 1.69927 1.35119 1.35360 1.13748 0.87536 0.77042 0.87921 0.81421 1.21102 1.22389 1.14065 1.22560 0.95902 0.94943 1.00428 1.23040 1.02334 0.97691 1.01360 1.22713 1.01411 1.04011 0.92330 0.90825 0.89805 0.89415 0.92019 0.90394 0.91901 0.90712 0.88786 0.91971 0.93116 0.89654 0.89932 0.90472 0.90420 0.88975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.20 36.00 0.37 -2.30 16 2 C 0.52 10.85 7.77 -10.99 -0.09 10.76 16 3 O -0.55 -13.51 13.97 5.56 0.08 -13.44 16 4 N -0.59 -11.59 2.62 -163.02 -0.43 -12.02 16 5 C 0.11 1.72 6.51 -2.53 -0.02 1.70 16 6 C -0.13 -1.85 7.09 -24.45 -0.17 -2.03 16 7 C -0.12 -2.05 5.09 -24.76 -0.13 -2.18 16 8 C 0.15 3.09 2.69 -66.95 -0.18 2.91 16 9 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 10 C 0.01 0.25 1.64 -91.77 -0.15 0.10 16 11 H 0.07 1.79 2.95 -51.93 -0.15 1.64 16 12 C -0.48 -12.71 7.22 -34.44 -0.25 -12.96 16 13 H 0.07 2.02 6.65 -52.49 -0.35 1.67 16 14 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 15 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 16 Si 0.83 22.38 26.46 -169.99 -4.50 17.88 16 17 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16 18 H -0.30 -8.17 7.11 56.52 0.40 -7.76 16 19 H -0.22 -5.92 4.23 56.52 0.24 -5.68 16 20 C -0.12 -2.45 4.99 -90.62 -0.45 -2.90 16 21 C -0.21 -3.96 10.18 -26.69 -0.27 -4.23 16 22 C -0.17 -3.43 9.79 -26.70 -0.26 -3.69 16 23 H 0.07 0.98 6.00 -51.93 -0.31 0.67 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.06 0.80 6.76 -51.93 -0.35 0.45 16 27 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.78 5.99 -51.93 -0.31 1.47 16 31 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.09 1.59 7.11 -51.93 -0.37 1.22 16 34 H 0.08 1.68 8.03 -51.93 -0.42 1.26 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 2.14 7.25 -51.93 -0.38 1.77 16 LS Contribution 286.35 15.07 4.32 4.32 Total: -1.00 -31.97 286.35 -7.19 -39.16 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -5.74 Total: 3.09 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -1.70 Total: -12.61 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.35 Total: -38.41 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.50 Total: 17.88 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.97 -7.19 -39.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.904 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds