Wall clock time and date at job start Mon Mar 30 2020 03:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21278 * 120.00301 * 2 1 4 4 N 1.34774 * 119.99762 * 179.97438 * 2 1 3 5 5 C 1.47429 * 125.65001 * 4.54418 * 4 2 1 6 6 C 1.54905 * 104.83405 * 204.09151 * 5 4 2 7 7 C 1.55411 * 101.66643 * 323.07489 * 6 5 4 8 8 C 1.47024 * 125.64772 * 184.49851 * 4 2 1 9 9 H 1.08997 * 109.88344 * 59.40874 * 8 4 2 10 10 C 1.53005 * 109.88345 * 298.39209 * 8 4 2 11 11 H 1.09005 * 109.46602 * 61.32709 * 10 8 4 12 12 C 1.50701 * 109.47100 * 301.32795 * 10 8 4 13 13 H 1.07997 * 119.99738 * 301.94173 * 12 10 8 14 14 C 1.37875 * 120.00237 * 122.22336 * 12 10 8 15 15 N 1.31512 * 120.00277 * 190.74220 * 14 12 10 16 16 Si 1.86805 * 119.99893 * 10.73739 * 14 12 10 17 17 H 1.48498 * 109.46832 * 89.00906 * 16 14 12 18 18 H 1.48496 * 109.47163 * 209.00907 * 16 14 12 19 19 H 1.48499 * 109.47165 * 329.00949 * 16 14 12 20 20 C 1.52998 * 109.47025 * 181.32295 * 10 8 4 21 21 C 1.53004 * 117.49766 * 244.17560 * 20 10 8 22 22 C 1.52998 * 117.49838 * 175.51811 * 20 10 8 23 23 H 1.08999 * 109.47556 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47079 * 299.99984 * 1 2 3 25 25 H 1.09003 * 109.47205 * 59.99834 * 1 2 3 26 26 H 1.08999 * 110.36553 * 322.93068 * 5 4 2 27 27 H 1.08996 * 110.36897 * 85.25273 * 5 4 2 28 28 H 1.09000 * 111.00830 * 81.05949 * 6 5 4 29 29 H 1.08995 * 111.00740 * 204.87452 * 6 5 4 30 30 H 1.09003 * 110.69325 * 277.04912 * 7 6 5 31 31 H 1.08991 * 110.85222 * 153.69962 * 7 6 5 32 32 H 0.96993 * 119.99904 * 179.97438 * 15 14 12 33 33 H 1.08992 * 115.55201 * 29.84572 * 20 10 8 34 34 H 1.08999 * 117.49828 * 0.02562 * 21 20 10 35 35 H 1.08997 * 117.49640 * 145.02059 * 21 20 10 36 36 H 1.08998 * 117.50129 * 214.98367 * 22 20 10 37 37 H 1.09004 * 117.49915 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.5761 -2.5085 -0.0938 6 6 2.6147 -3.4581 0.5535 7 6 3.9544 -2.8248 0.0852 8 6 3.6407 -1.3138 0.0943 9 1 3.9994 -0.8663 1.0212 10 6 4.3097 -0.6363 -1.1034 11 1 4.0736 0.4278 -1.0975 12 6 3.8019 -1.2565 -2.3796 13 1 3.9183 -2.3168 -2.5482 14 6 3.1938 -0.4693 -3.3343 15 7 2.5650 -1.0288 -4.3448 16 14 3.2631 1.3921 -3.1925 17 1 4.4797 1.8958 -3.8791 18 1 2.0569 1.9821 -3.8265 19 1 3.3080 1.7780 -1.7592 20 6 5.8256 -0.8228 -1.0137 21 6 6.6826 0.4324 -0.8378 22 6 6.6713 -0.3054 -2.1790 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.6368 -2.5408 0.4582 27 1 1.4135 -2.7788 -1.1371 28 1 2.5358 -3.4409 1.6405 29 1 2.5068 -4.4735 0.1722 30 1 4.2082 -3.1600 -0.9205 31 1 4.7581 -3.0560 0.7842 32 1 2.1369 -0.4749 -5.0162 33 1 6.1586 -1.7333 -0.5156 34 1 6.1664 1.3910 -0.7857 35 1 7.5796 0.3475 -0.2244 36 1 7.5608 -0.8753 -2.4474 37 1 6.1476 0.1676 -3.0098 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260409141.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:32 Heat of formation + Delta-G solvation = -28.352521 kcal Electronic energy + Delta-G solvation = -18307.878849 eV Core-core repulsion = 15664.165523 eV Total energy + Delta-G solvation = -2643.713326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.04355 -38.79467 -37.58071 -34.59452 -32.97604 -31.89709 -29.97520 -28.09487 -25.21794 -23.58181 -23.07485 -22.30702 -20.50704 -19.68580 -19.00040 -17.69992 -17.16724 -16.32289 -16.19605 -15.66300 -15.38737 -15.07856 -14.45904 -14.34698 -13.98666 -13.66032 -13.38812 -13.25993 -13.09775 -12.97440 -12.66011 -12.23593 -12.21846 -11.90941 -11.82693 -11.70511 -11.20030 -11.15959 -10.85725 -10.64184 -10.51842 -10.14722 -9.23905 -8.23933 -6.15397 1.21484 1.29265 1.55545 1.86524 2.39267 2.42599 3.10802 3.23500 3.76366 3.90687 4.05674 4.17172 4.27908 4.31516 4.35086 4.48907 4.58645 4.63805 4.74747 4.79644 4.80983 4.88420 5.02571 5.05166 5.13568 5.18105 5.23269 5.30815 5.39319 5.39755 5.59976 5.69100 5.79032 5.89308 6.41487 6.88794 6.91896 7.43756 7.48481 8.91107 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018451 B = 0.014311 C = 0.011245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.189508 B = 1956.084719 C = 2489.374333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.597 6.597 4 N -0.595 5.595 5 C 0.099 3.901 6 C -0.118 4.118 7 C -0.118 4.118 8 C 0.147 3.853 9 H 0.050 0.950 10 C 0.006 3.994 11 H 0.040 0.960 12 C -0.447 4.447 13 H 0.052 0.948 14 C 0.039 3.961 15 N -0.943 5.943 16 Si 0.872 3.128 17 H -0.288 1.288 18 H -0.309 1.309 19 H -0.222 1.222 20 C -0.129 4.129 21 C -0.188 4.188 22 C -0.180 4.180 23 H 0.100 0.900 24 H 0.110 0.890 25 H 0.079 0.921 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -5.089 12.103 13.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.292 3.708 3 O -0.480 6.480 4 N -0.326 5.326 5 C -0.023 4.023 6 C -0.156 4.156 7 C -0.156 4.156 8 C 0.043 3.957 9 H 0.068 0.932 10 C -0.013 4.013 11 H 0.058 0.942 12 C -0.485 4.485 13 H 0.070 0.930 14 C -0.157 4.157 15 N -0.585 5.585 16 Si 0.701 3.299 17 H -0.215 1.215 18 H -0.237 1.237 19 H -0.146 1.146 20 C -0.148 4.148 21 C -0.225 4.225 22 C -0.217 4.217 23 H 0.118 0.882 24 H 0.129 0.871 25 H 0.098 0.902 26 H 0.118 0.882 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.131 0.869 34 H 0.082 0.918 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.408 -4.443 11.963 12.768 hybrid contribution -0.104 1.361 -1.073 1.736 sum -0.512 -3.081 10.891 11.330 Atomic orbital electron populations 1.21874 0.89467 1.05810 1.05019 1.21093 0.91710 0.82290 0.75704 1.90672 1.71797 1.32538 1.52949 1.48442 1.07736 1.06248 1.70138 1.22442 0.98009 0.81260 1.00560 1.22755 0.93085 0.98660 1.01055 1.22682 0.98479 0.92118 1.02321 1.21578 0.80258 0.97347 0.96517 0.93230 1.19466 0.90376 0.97498 0.93969 0.94213 1.20847 1.33305 0.94578 0.99794 0.92959 1.25311 0.95373 0.99226 0.95825 1.70005 1.37673 1.35778 1.15020 0.86951 0.76039 0.86255 0.80618 1.21461 1.23734 1.14586 1.22523 0.94091 0.96990 1.01192 1.23062 1.02903 0.96003 1.00491 1.22716 1.02268 1.04927 0.91756 0.88156 0.87120 0.90234 0.88189 0.93378 0.89099 0.88640 0.91438 0.89015 0.93574 0.86893 0.91769 0.86607 0.87639 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.81 10.20 71.24 0.73 -4.09 16 2 C 0.50 20.58 7.77 87.66 0.68 21.26 16 3 O -0.60 -29.79 13.97 -3.02 -0.04 -29.83 16 4 N -0.59 -22.61 2.62 -788.05 -2.06 -24.67 16 5 C 0.10 2.95 6.51 86.85 0.57 3.52 16 6 C -0.12 -2.82 7.09 32.07 0.23 -2.60 16 7 C -0.12 -3.60 5.09 31.87 0.16 -3.44 16 8 C 0.15 5.65 2.69 45.34 0.12 5.78 16 9 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 10 C 0.01 0.30 1.64 -11.54 -0.02 0.28 16 11 H 0.04 2.09 2.95 -2.38 -0.01 2.08 16 12 C -0.45 -23.79 7.22 25.60 0.18 -23.61 16 13 H 0.05 2.99 6.65 -2.91 -0.02 2.97 16 14 C 0.04 2.28 5.47 84.65 0.46 2.74 16 15 N -0.94 -58.46 13.96 21.45 0.30 -58.17 16 16 Si 0.87 48.15 26.46 68.60 1.82 49.96 16 17 H -0.29 -15.74 7.11 99.48 0.71 -15.04 16 18 H -0.31 -17.49 7.11 99.48 0.71 -16.78 16 19 H -0.22 -12.48 4.23 99.48 0.42 -12.06 16 20 C -0.13 -5.08 4.99 -10.79 -0.05 -5.13 16 21 C -0.19 -6.79 10.18 30.62 0.31 -6.48 16 22 C -0.18 -7.16 9.79 30.62 0.30 -6.86 16 23 H 0.10 2.36 6.00 -2.39 -0.01 2.35 16 24 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.10 2.20 6.76 -2.39 -0.02 2.18 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.07 2.44 5.99 -2.39 -0.01 2.43 16 31 H 0.09 2.26 8.09 -2.39 -0.02 2.24 16 32 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 33 H 0.11 3.82 7.11 -2.39 -0.02 3.80 16 34 H 0.06 2.56 8.03 -2.39 -0.02 2.54 16 35 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 37 H 0.06 2.62 7.25 -2.38 -0.02 2.61 16 Total: -1.00 -72.59 286.35 4.44 -68.15 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.76 Total: 13.17 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 3.67 Total: -18.62 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -1.77 Total: -82.84 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.04 Total: -29.83 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.82 Total: 49.96 kcal Total: -72.59 4.44 -68.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409141.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.794 kcal (2) G-P(sol) polarization free energy of solvation -72.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds