Wall clock time and date at job start Mon Mar 30 2020 03:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 119.99370 * 2 1 4 4 N 1.34766 * 120.00324 * 179.72760 * 2 1 3 5 5 C 1.47427 * 125.65098 * 355.05594 * 4 2 1 6 6 C 1.54904 * 104.83891 * 155.83440 * 5 4 2 7 7 C 1.55170 * 101.57775 * 37.01091 * 6 5 4 8 8 C 1.47025 * 125.65179 * 174.74845 * 4 2 1 9 9 H 1.08996 * 109.88050 * 300.51525 * 8 4 2 10 10 C 1.53009 * 109.88090 * 61.67711 * 8 4 2 11 11 H 1.08993 * 109.46946 * 299.53822 * 10 8 4 12 12 C 1.50705 * 109.46904 * 59.53497 * 10 8 4 13 13 H 1.08002 * 119.99816 * 0.02562 * 12 10 8 14 14 C 1.37875 * 119.99836 * 179.97438 * 12 10 8 15 15 N 1.31518 * 120.00058 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99997 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47117 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47047 * 120.00121 * 16 14 12 19 19 H 1.48497 * 109.47087 * 240.00114 * 16 14 12 20 20 C 1.52995 * 109.46981 * 179.53510 * 10 8 4 21 21 C 1.53001 * 117.49654 * 133.39875 * 20 10 8 22 22 C 1.52997 * 117.49957 * 64.74181 * 20 10 8 23 23 H 1.08997 * 109.47752 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46821 * 119.99988 * 1 2 3 25 25 H 1.08999 * 109.46990 * 239.99536 * 1 2 3 26 26 H 1.09006 * 110.37043 * 274.67854 * 5 4 2 27 27 H 1.09000 * 110.36626 * 36.99511 * 5 4 2 28 28 H 1.08996 * 111.00920 * 155.08441 * 6 5 4 29 29 H 1.09000 * 111.00564 * 278.90780 * 6 5 4 30 30 H 1.08992 * 110.71632 * 82.86161 * 7 6 5 31 31 H 1.09000 * 110.71673 * 205.96007 * 7 6 5 32 32 H 0.96991 * 120.00316 * 180.02562 * 15 14 12 33 33 H 1.08999 * 115.54819 * 279.06788 * 20 10 8 34 34 H 1.09003 * 117.49958 * 0.02562 * 21 20 10 35 35 H 1.09003 * 117.49800 * 145.01688 * 21 20 10 36 36 H 1.08997 * 117.50077 * 214.97689 * 22 20 10 37 37 H 1.09001 * 117.49775 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0055 5 6 1.5770 -2.5075 0.1152 6 6 2.6109 -3.4625 -0.5318 7 6 3.9506 -2.8260 -0.0761 8 6 3.6397 -1.3148 -0.1031 9 1 3.9876 -0.8795 -1.0398 10 6 4.3221 -0.6248 1.0798 11 1 4.0735 0.4364 1.0741 12 6 3.8445 -1.2457 2.3673 13 1 3.1264 -2.0521 2.3440 14 6 4.3250 -0.7850 3.5747 15 7 5.1998 0.1966 3.6029 16 14 3.7325 -1.5542 5.1705 17 1 2.7561 -2.6313 4.8682 18 1 4.8899 -2.1272 5.9034 19 1 3.0809 -0.5157 6.0085 20 6 5.8382 -0.7941 0.9636 21 6 6.7063 0.4469 1.1806 22 6 6.5340 -0.1305 -0.2265 23 1 -0.3634 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 -0.5139 0.8899 26 1 1.4218 -2.7693 1.1619 27 1 0.6337 -2.5443 -0.4297 28 1 2.5062 -4.4745 -0.1409 29 1 2.5237 -3.4546 -1.6183 30 1 4.2096 -3.1523 0.9311 31 1 4.7504 -3.0682 -0.7761 32 1 5.5382 0.5205 4.4522 33 1 6.2322 -1.7504 1.3078 34 1 6.1973 1.3840 1.4066 35 1 7.6716 0.3071 1.6672 36 1 7.3860 -0.6499 -0.6651 37 1 5.9115 0.4264 -0.9269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260409148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:35 Heat of formation + Delta-G solvation = -15.465643 kcal Electronic energy + Delta-G solvation = -18092.275942 eV Core-core repulsion = 15449.121433 eV Total energy + Delta-G solvation = -2643.154509 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.49889 -37.06339 -35.80523 -32.44463 -31.36271 -30.08892 -28.56661 -26.17822 -23.41676 -22.10318 -21.07753 -20.78971 -18.96424 -18.02366 -16.70399 -15.90111 -15.46087 -14.61671 -14.34387 -14.05057 -13.80195 -12.97544 -12.89264 -12.62962 -12.33598 -12.13562 -12.00358 -11.68165 -11.46345 -10.93220 -10.71669 -10.67802 -10.62771 -10.28385 -10.08520 -9.86544 -9.67362 -9.47079 -8.98143 -8.71347 -8.39195 -8.16375 -7.60938 -5.84694 -3.89421 3.32652 3.38849 3.41421 3.41851 3.80255 4.50735 5.06981 5.09679 5.23469 5.36816 5.44269 5.50279 5.64036 5.72855 5.85574 5.99827 6.05948 6.10443 6.16248 6.26614 6.29088 6.40719 6.50758 6.56195 6.63146 6.91199 7.02122 7.12023 7.21231 7.27874 7.48308 7.71273 7.97313 8.19556 8.37567 8.54824 8.97931 9.12833 9.71867 11.21298 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.011872 C = 0.009902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.333123 B = 2357.906399 C = 2827.120720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.523 3.477 3 O -0.543 6.543 4 N -0.598 5.598 5 C 0.105 3.895 6 C -0.136 4.136 7 C -0.121 4.121 8 C 0.150 3.850 9 H 0.049 0.951 10 C 0.064 3.936 11 H 0.048 0.952 12 C -0.503 4.503 13 H 0.055 0.945 14 C 0.065 3.935 15 N -0.873 5.873 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.288 1.288 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.233 4.233 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.255 0.745 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.682 -6.505 -7.395 11.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.311 3.689 3 O -0.420 6.420 4 N -0.331 5.331 5 C -0.019 4.019 6 C -0.174 4.174 7 C -0.159 4.159 8 C 0.047 3.953 9 H 0.067 0.933 10 C 0.045 3.955 11 H 0.066 0.934 12 C -0.541 4.541 13 H 0.073 0.927 14 C -0.137 4.137 15 N -0.511 5.511 16 Si 0.709 3.291 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.103 4.103 21 C -0.166 4.166 22 C -0.270 4.270 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.306 -5.744 -7.268 10.676 hybrid contribution -0.243 -0.472 1.139 1.257 sum -5.550 -6.217 -6.128 10.344 Atomic orbital electron populations 1.21872 0.93104 1.04461 1.03282 1.20123 0.89589 0.82597 0.76567 1.90697 1.70560 1.30708 1.50080 1.48333 1.08074 1.04955 1.71784 1.22220 0.95956 0.83062 1.00633 1.22755 0.96427 0.98352 0.99828 1.22715 0.95527 0.94491 1.03165 1.21670 0.79047 0.95393 0.99175 0.93319 1.18697 0.88037 0.97624 0.91130 0.93443 1.20975 1.24596 1.18377 0.90133 0.92708 1.24952 0.95207 0.95075 0.98512 1.70054 1.29929 1.26183 1.24930 0.86743 0.78474 0.79136 0.84772 1.20092 1.21353 1.21392 1.22175 0.96339 0.95507 0.96277 1.22376 0.99957 0.99695 0.94618 1.23082 1.03431 1.07874 0.92646 0.89707 0.90405 0.89964 0.91299 0.91933 0.90772 0.91727 0.88647 0.91728 0.93543 0.90391 0.89366 0.91571 0.91324 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.25 36.01 0.33 -2.04 16 2 C 0.52 10.56 7.78 -10.99 -0.09 10.48 16 3 O -0.54 -13.60 15.93 5.56 0.09 -13.51 16 4 N -0.60 -11.49 2.61 -163.02 -0.43 -11.92 16 5 C 0.10 1.57 6.30 -2.53 -0.02 1.55 16 6 C -0.14 -1.85 7.08 -24.58 -0.17 -2.02 16 7 C -0.12 -2.08 5.49 -24.90 -0.14 -2.22 16 8 C 0.15 3.09 2.56 -66.95 -0.17 2.92 16 9 H 0.05 1.04 7.64 -51.93 -0.40 0.64 16 10 C 0.06 1.59 1.63 -91.77 -0.15 1.44 16 11 H 0.05 1.41 6.49 -51.93 -0.34 1.08 16 12 C -0.50 -13.22 7.03 -34.44 -0.24 -13.46 16 13 H 0.05 1.40 5.92 -52.49 -0.31 1.09 16 14 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16 15 N -0.87 -24.98 11.07 55.43 0.61 -24.37 16 16 Si 0.88 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 C -0.08 -1.96 3.64 -90.62 -0.33 -2.29 16 21 C -0.13 -3.03 8.64 -26.70 -0.23 -3.26 16 22 C -0.23 -4.85 9.81 -26.70 -0.26 -5.12 16 23 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 24 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16 25 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.09 7.50 -51.93 -0.39 0.70 16 27 H 0.06 0.74 7.48 -51.93 -0.39 0.35 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 1.83 6.46 -51.93 -0.34 1.50 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.09 2.28 8.04 -51.93 -0.42 1.86 16 35 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.60 7.93 -51.93 -0.41 1.19 16 LS Contribution 293.81 15.07 4.43 4.43 Total: -1.00 -31.26 293.81 -7.79 -39.05 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.92 Total: 2.43 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -1.56 Total: -12.33 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.19 Total: -36.29 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.26 -7.79 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.588 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds