Wall clock time and date at job start Mon Mar 30 2020 03:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21282 * 119.99370 * 2 1 4 4 N 1.34766 * 120.00324 * 179.72760 * 2 1 3 5 5 C 1.47427 * 125.65098 * 355.05594 * 4 2 1 6 6 C 1.54904 * 104.83891 * 155.83440 * 5 4 2 7 7 C 1.55170 * 101.57775 * 37.01091 * 6 5 4 8 8 C 1.47025 * 125.65179 * 174.74845 * 4 2 1 9 9 H 1.08996 * 109.88050 * 300.51525 * 8 4 2 10 10 C 1.53009 * 109.88090 * 61.67711 * 8 4 2 11 11 H 1.08993 * 109.46946 * 299.53822 * 10 8 4 12 12 C 1.50705 * 109.46904 * 59.53497 * 10 8 4 13 13 H 1.08002 * 119.99816 * 0.02562 * 12 10 8 14 14 C 1.37875 * 119.99836 * 179.97438 * 12 10 8 15 15 N 1.31518 * 120.00058 * 0.02562 * 14 12 10 16 16 Si 1.86796 * 119.99997 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47117 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47047 * 120.00121 * 16 14 12 19 19 H 1.48497 * 109.47087 * 240.00114 * 16 14 12 20 20 C 1.52995 * 109.46981 * 179.53510 * 10 8 4 21 21 C 1.53001 * 117.49654 * 133.39875 * 20 10 8 22 22 C 1.52997 * 117.49957 * 64.74181 * 20 10 8 23 23 H 1.08997 * 109.47752 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46821 * 119.99988 * 1 2 3 25 25 H 1.08999 * 109.46990 * 239.99536 * 1 2 3 26 26 H 1.09006 * 110.37043 * 274.67854 * 5 4 2 27 27 H 1.09000 * 110.36626 * 36.99511 * 5 4 2 28 28 H 1.08996 * 111.00920 * 155.08441 * 6 5 4 29 29 H 1.09000 * 111.00564 * 278.90780 * 6 5 4 30 30 H 1.08992 * 110.71632 * 82.86161 * 7 6 5 31 31 H 1.09000 * 110.71673 * 205.96007 * 7 6 5 32 32 H 0.96991 * 120.00316 * 180.02562 * 15 14 12 33 33 H 1.08999 * 115.54819 * 279.06788 * 20 10 8 34 34 H 1.09003 * 117.49958 * 0.02562 * 21 20 10 35 35 H 1.09003 * 117.49800 * 145.01688 * 21 20 10 36 36 H 1.08997 * 117.50077 * 214.97689 * 22 20 10 37 37 H 1.09001 * 117.49775 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0055 5 6 1.5770 -2.5075 0.1152 6 6 2.6109 -3.4625 -0.5318 7 6 3.9506 -2.8260 -0.0761 8 6 3.6397 -1.3148 -0.1031 9 1 3.9876 -0.8795 -1.0398 10 6 4.3221 -0.6248 1.0798 11 1 4.0735 0.4364 1.0741 12 6 3.8445 -1.2457 2.3673 13 1 3.1264 -2.0521 2.3440 14 6 4.3250 -0.7850 3.5747 15 7 5.1998 0.1966 3.6029 16 14 3.7325 -1.5542 5.1705 17 1 2.7561 -2.6313 4.8682 18 1 4.8899 -2.1272 5.9034 19 1 3.0809 -0.5157 6.0085 20 6 5.8382 -0.7941 0.9636 21 6 6.7063 0.4469 1.1806 22 6 6.5340 -0.1305 -0.2265 23 1 -0.3634 1.0276 0.0005 24 1 -0.3633 -0.5138 -0.8900 25 1 -0.3633 -0.5139 0.8899 26 1 1.4218 -2.7693 1.1619 27 1 0.6337 -2.5443 -0.4297 28 1 2.5062 -4.4745 -0.1409 29 1 2.5237 -3.4546 -1.6183 30 1 4.2096 -3.1523 0.9311 31 1 4.7504 -3.0682 -0.7761 32 1 5.5382 0.5205 4.4522 33 1 6.2322 -1.7504 1.3078 34 1 6.1973 1.3840 1.4066 35 1 7.6716 0.3071 1.6672 36 1 7.3860 -0.6499 -0.6651 37 1 5.9115 0.4264 -0.9269 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260409148.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:34 Heat of formation + Delta-G solvation = -34.431161 kcal Electronic energy + Delta-G solvation = -18093.098349 eV Core-core repulsion = 15449.121433 eV Total energy + Delta-G solvation = -2643.976916 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.02958 -38.76350 -37.47728 -34.47810 -32.86010 -31.65049 -29.89263 -27.90287 -25.19679 -23.65531 -22.89486 -22.22227 -20.70522 -19.65312 -18.48236 -17.46340 -17.03484 -16.46658 -16.04476 -15.74675 -15.25558 -14.77826 -14.32436 -14.23303 -13.93084 -13.57666 -13.25386 -13.06609 -12.90403 -12.88989 -12.48841 -12.36950 -12.15310 -11.87318 -11.76578 -11.64436 -11.40976 -11.26166 -10.70315 -10.55029 -10.33054 -10.14888 -9.22343 -7.94113 -6.04496 1.39371 1.41860 1.50761 1.87094 2.40274 2.48358 3.30708 3.40003 3.79948 3.89617 4.21315 4.26006 4.28676 4.45011 4.52901 4.55292 4.62618 4.67805 4.72656 4.83561 4.88712 5.07462 5.09949 5.12709 5.16210 5.25961 5.35667 5.41968 5.47451 5.56417 5.67228 5.76708 5.96801 6.16206 6.46222 6.92232 7.05791 7.46235 7.59113 9.10718 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.017547 B = 0.011872 C = 0.009902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.333123 B = 2357.906399 C = 2827.120720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.503 3.497 3 O -0.609 6.609 4 N -0.603 5.603 5 C 0.097 3.903 6 C -0.121 4.121 7 C -0.117 4.117 8 C 0.146 3.854 9 H 0.036 0.964 10 C 0.069 3.931 11 H -0.015 1.015 12 C -0.499 4.499 13 H 0.062 0.938 14 C 0.008 3.992 15 N -0.906 5.906 16 Si 0.942 3.058 17 H -0.259 1.259 18 H -0.286 1.286 19 H -0.296 1.296 20 C -0.093 4.093 21 C -0.144 4.144 22 C -0.196 4.196 23 H 0.084 0.916 24 H 0.117 0.883 25 H 0.099 0.901 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.250 0.750 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.185 -9.484 -8.493 14.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.294 3.706 3 O -0.492 6.492 4 N -0.335 5.335 5 C -0.025 4.025 6 C -0.158 4.158 7 C -0.155 4.155 8 C 0.043 3.957 9 H 0.054 0.946 10 C 0.050 3.950 11 H 0.003 0.997 12 C -0.537 4.537 13 H 0.080 0.920 14 C -0.190 4.190 15 N -0.545 5.545 16 Si 0.769 3.231 17 H -0.183 1.183 18 H -0.212 1.212 19 H -0.223 1.223 20 C -0.112 4.112 21 C -0.181 4.181 22 C -0.233 4.233 23 H 0.103 0.897 24 H 0.136 0.864 25 H 0.117 0.883 26 H 0.078 0.922 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.105 0.895 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.841 -8.785 -8.375 13.933 hybrid contribution 0.228 0.494 1.455 1.553 sum -6.613 -8.291 -6.921 12.663 Atomic orbital electron populations 1.21852 0.88092 1.05483 1.05885 1.21348 0.92103 0.81919 0.75236 1.90669 1.72381 1.33100 1.53032 1.48566 1.07661 1.06634 1.70649 1.22537 0.98089 0.80785 1.01087 1.22773 0.92919 0.98973 1.01168 1.22603 0.98451 0.91812 1.02612 1.21548 0.80251 0.97480 0.96437 0.94587 1.18500 0.89456 0.94260 0.92808 0.99652 1.21272 1.23873 1.17821 0.90731 0.91968 1.25733 0.95730 0.95754 1.01822 1.70234 1.31437 1.27696 1.25136 0.85754 0.78163 0.78355 0.80810 1.18286 1.21189 1.22344 1.22034 0.95684 0.95105 0.98397 1.22220 1.00052 0.98377 0.97465 1.23062 1.03411 1.05743 0.91040 0.89697 0.86446 0.88255 0.92180 0.87667 0.87961 0.89525 0.90826 0.90088 0.94125 0.90534 0.92987 0.90778 0.87698 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.99 9.25 71.24 0.66 -3.33 16 2 C 0.50 20.30 7.78 87.66 0.68 20.99 16 3 O -0.61 -32.11 15.93 -3.04 -0.05 -32.16 16 4 N -0.60 -22.53 2.61 -788.07 -2.06 -24.58 16 5 C 0.10 2.53 6.30 86.85 0.55 3.08 16 6 C -0.12 -2.75 7.08 31.99 0.23 -2.52 16 7 C -0.12 -3.76 5.49 31.78 0.17 -3.59 16 8 C 0.15 6.04 2.56 45.34 0.12 6.15 16 9 H 0.04 1.55 7.64 -2.39 -0.02 1.53 16 10 C 0.07 3.54 1.63 -11.54 -0.02 3.52 16 11 H -0.01 -0.94 6.49 -2.39 -0.02 -0.95 16 12 C -0.50 -26.65 7.03 25.60 0.18 -26.47 16 13 H 0.06 3.16 5.92 -2.91 -0.02 3.14 16 14 C 0.01 0.47 5.30 84.65 0.45 0.92 16 15 N -0.91 -54.05 11.07 21.45 0.24 -53.82 16 16 Si 0.94 44.12 29.54 68.60 2.03 46.15 16 17 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 20 C -0.09 -4.46 3.64 -10.80 -0.04 -4.50 16 21 C -0.14 -7.02 8.64 30.62 0.26 -6.75 16 22 C -0.20 -8.12 9.81 30.62 0.30 -7.82 16 23 H 0.08 2.20 8.12 -2.39 -0.02 2.18 16 24 H 0.12 2.11 7.96 -2.39 -0.02 2.09 16 25 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.06 1.70 7.50 -2.38 -0.02 1.68 16 27 H 0.11 1.89 7.48 -2.39 -0.02 1.88 16 28 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.07 2.71 6.46 -2.39 -0.02 2.69 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 33 H 0.08 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.05 2.89 8.04 -2.39 -0.02 2.87 16 35 H 0.07 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 37 H 0.07 3.01 7.93 -2.39 -0.02 2.99 16 Total: -1.00 -73.65 293.81 4.74 -68.92 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 1.04 Total: 15.81 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 3.54 Total: -20.32 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -1.82 Total: -78.40 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.05 Total: -32.16 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -73.65 4.74 -68.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260409148.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.484 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds