Wall clock time and date at job start Mon Mar 30 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45755 * 117.94632 * 2 1 4 4 C 1.53097 * 110.38828 * 160.74608 * 3 2 1 5 5 C 1.53346 * 108.52871 * 51.11362 * 4 3 2 6 6 C 1.53071 * 108.42517 * 292.31132 * 5 4 3 7 7 H 1.09003 * 109.39937 * 288.76949 * 6 5 4 8 8 C 1.53002 * 109.40154 * 169.02736 * 6 5 4 9 9 H 1.09003 * 109.47145 * 299.57101 * 8 6 5 10 10 C 1.50697 * 109.47282 * 179.56899 * 8 6 5 11 11 H 1.08000 * 119.99911 * 305.34012 * 10 8 6 12 12 C 1.37874 * 120.00129 * 125.33471 * 10 8 6 13 13 N 1.31519 * 120.00026 * 6.06102 * 12 10 8 14 14 Si 1.86799 * 120.00493 * 186.05369 * 12 10 8 15 15 H 1.48503 * 109.46825 * 90.00037 * 14 12 10 16 16 H 1.48501 * 109.47619 * 210.00437 * 14 12 10 17 17 H 1.48507 * 109.46667 * 330.00599 * 14 12 10 18 18 C 1.53002 * 109.47139 * 59.57272 * 8 6 5 19 19 C 1.53002 * 117.49653 * 254.13017 * 18 8 6 20 20 C 1.52997 * 117.50133 * 185.47116 * 18 8 6 21 21 C 1.33354 * 117.95054 * 180.26487 * 2 1 3 22 22 O 1.21287 * 118.23996 * 2.24043 * 21 2 1 23 23 H 1.09004 * 109.46942 * 179.74150 * 1 2 3 24 24 H 1.08992 * 109.47433 * 59.73562 * 1 2 3 25 25 H 1.09004 * 109.46941 * 299.73740 * 1 2 3 26 26 H 1.09002 * 109.29868 * 281.23821 * 3 2 1 27 27 H 1.08995 * 109.29997 * 40.61428 * 3 2 1 28 28 H 1.08999 * 109.81058 * 291.32794 * 4 3 2 29 29 H 1.09003 * 109.68054 * 170.82377 * 4 3 2 30 30 H 1.08998 * 109.67729 * 172.57810 * 5 4 3 31 31 H 1.09002 * 109.67848 * 52.04301 * 5 4 3 32 32 H 0.96994 * 120.00557 * 179.97438 * 13 12 10 33 33 H 1.09001 * 115.55212 * 39.79396 * 18 8 6 34 34 H 1.08996 * 117.49889 * 359.97438 * 19 18 8 35 35 H 1.08998 * 117.49636 * 145.02041 * 19 18 8 36 36 H 1.08998 * 117.50095 * 214.98258 * 20 18 8 37 37 H 1.08997 * 117.49806 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1238 0.4732 5 6 4.2493 0.0003 -0.3398 6 6 3.5838 -1.3242 0.0425 7 1 3.8881 -1.6045 1.0509 8 6 4.0196 -2.4138 -0.9393 9 1 3.7130 -2.1376 -1.9482 10 6 3.3737 -3.7209 -0.5582 11 1 3.4930 -4.1108 0.4419 12 6 2.6303 -4.4189 -1.4861 13 7 2.5826 -4.0076 -2.7344 14 14 1.6911 -5.9491 -0.9706 15 1 0.3249 -5.5668 -0.5316 16 1 1.5980 -6.8839 -2.1207 17 1 2.4037 -6.6129 0.1506 18 6 5.5415 -2.5641 -0.8918 19 6 6.3436 -2.0050 -2.0687 20 6 6.1888 -3.5182 -1.8975 21 6 2.0900 -1.1780 -0.0054 22 8 1.4159 -2.1852 -0.0519 23 1 -0.3633 -1.0277 -0.0046 24 1 -0.3634 0.5179 -0.8875 25 1 -0.3633 0.5098 0.8924 26 1 2.1398 1.6998 -1.0090 27 1 1.6271 1.9718 0.6696 28 1 3.6102 0.8656 1.5321 29 1 4.1401 2.0544 0.3158 30 1 5.3142 -0.0450 -0.1122 31 1 4.1087 0.1878 -1.4043 32 1 2.0600 -4.4988 -3.3874 33 1 5.9898 -2.4978 0.0995 34 1 5.7870 -1.5305 -2.8768 35 1 7.3197 -1.5713 -1.8516 36 1 7.0632 -4.0794 -1.5679 37 1 5.5305 -4.0391 -2.5927 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260469275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:42 Heat of formation + Delta-G solvation = -12.276066 kcal Electronic energy + Delta-G solvation = -18040.568341 eV Core-core repulsion = 15397.552142 eV Total energy + Delta-G solvation = -2643.016199 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.72730 -36.74064 -35.56499 -33.60672 -32.16258 -29.91713 -26.87044 -26.48574 -23.69498 -22.15708 -21.61374 -21.15104 -18.96005 -17.93005 -16.21787 -15.81843 -15.55571 -15.08795 -14.35115 -14.17693 -13.60480 -13.53217 -12.84196 -12.76542 -12.18466 -12.05716 -11.81073 -11.63338 -11.19439 -10.92057 -10.86515 -10.62976 -10.51513 -10.31492 -10.18847 -10.16317 -9.60783 -9.23373 -8.81964 -8.58771 -8.36142 -8.04783 -7.94406 -5.76871 -3.68300 3.50504 3.56468 3.60273 3.71730 3.82240 4.68685 4.99797 5.12288 5.15930 5.28415 5.50940 5.60637 5.76049 5.78364 5.84340 5.88501 5.98729 6.09249 6.12425 6.16313 6.23462 6.30402 6.39389 6.46405 6.58889 6.69528 6.82410 6.98234 7.08206 7.12178 7.31650 7.57022 7.91250 8.14267 8.31580 8.57647 9.27546 9.34214 9.90197 11.34285 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.012304 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.865448 B = 2275.097674 C = 3391.703312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.628 5.628 3 C 0.123 3.877 4 C -0.135 4.135 5 C -0.117 4.117 6 C -0.086 4.086 7 H 0.080 0.920 8 C 0.074 3.926 9 H 0.071 0.929 10 C -0.469 4.469 11 H 0.046 0.954 12 C 0.083 3.917 13 N -0.901 5.901 14 Si 0.886 3.114 15 H -0.281 1.281 16 H -0.294 1.294 17 H -0.279 1.279 18 C -0.115 4.115 19 C -0.204 4.204 20 C -0.167 4.167 21 C 0.514 3.486 22 O -0.494 6.494 23 H 0.089 0.911 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.255 0.745 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.111 11.081 4.273 12.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.366 5.366 3 C -0.001 4.001 4 C -0.173 4.173 5 C -0.155 4.155 6 C -0.108 4.108 7 H 0.098 0.902 8 C 0.055 3.945 9 H 0.089 0.911 10 C -0.507 4.507 11 H 0.064 0.936 12 C -0.118 4.118 13 N -0.541 5.541 14 Si 0.716 3.284 15 H -0.208 1.208 16 H -0.221 1.221 17 H -0.204 1.204 18 C -0.133 4.133 19 C -0.241 4.241 20 C -0.204 4.204 21 C 0.302 3.698 22 O -0.365 6.365 23 H 0.107 0.893 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.687 10.433 4.080 11.329 hybrid contribution -0.589 -0.633 0.238 0.897 sum 1.098 9.800 4.318 10.765 Atomic orbital electron populations 1.21537 0.81387 1.04219 0.99556 1.47435 1.06388 1.06159 1.76616 1.21196 0.93261 0.85314 1.00319 1.21916 0.94826 0.99923 1.00626 1.21770 0.99846 0.93982 0.99883 1.21405 0.89959 0.96613 1.02780 0.90242 1.18524 0.87685 0.92341 0.95983 0.91112 1.20621 1.29108 1.04103 0.96841 0.93565 1.24650 0.95388 0.97028 0.94699 1.69870 1.41906 1.40444 1.01898 0.86702 0.81255 0.82908 0.77567 1.20757 1.22065 1.20400 1.22491 0.97221 1.01813 0.91809 1.22971 1.00574 0.97532 1.03065 1.22696 1.01616 0.91410 1.04678 1.20312 0.91513 0.81981 0.75999 1.90747 1.65321 1.34687 1.45755 0.89254 0.93512 0.93625 0.92848 0.92118 0.91584 0.90936 0.91307 0.91734 0.93539 0.90601 0.89826 0.91142 0.91230 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.48 59.85 0.63 1.86 16 2 N -0.63 -11.32 3.21 -182.75 -0.59 -11.91 16 3 C 0.12 1.67 6.40 -4.39 -0.03 1.65 16 4 C -0.14 -1.75 6.03 -26.50 -0.16 -1.91 16 5 C -0.12 -1.90 4.82 -26.52 -0.13 -2.03 16 6 C -0.09 -1.78 2.05 -91.99 -0.19 -1.97 16 7 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 8 C 0.07 1.78 1.73 -91.77 -0.16 1.62 16 9 H 0.07 1.96 6.77 -51.93 -0.35 1.60 16 10 C -0.47 -13.08 5.92 -34.44 -0.20 -13.29 16 11 H 0.05 1.33 7.82 -52.49 -0.41 0.92 16 12 C 0.08 2.40 4.90 -17.82 -0.09 2.31 16 13 N -0.90 -26.93 12.64 55.43 0.70 -26.23 16 14 Si 0.89 23.37 29.54 -169.99 -5.02 18.35 16 15 H -0.28 -7.62 7.11 56.52 0.40 -7.22 16 16 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 17 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 18 C -0.11 -2.42 4.01 -90.62 -0.36 -2.78 16 19 C -0.20 -3.85 10.15 -26.69 -0.27 -4.12 16 20 C -0.17 -3.52 10.02 -26.70 -0.27 -3.79 16 21 C 0.51 11.47 7.04 -11.87 -0.08 11.39 16 22 O -0.49 -13.28 12.91 5.55 0.07 -13.21 16 23 H 0.09 1.69 6.59 -51.93 -0.34 1.35 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.07 0.85 8.12 -51.93 -0.42 0.42 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.03 7.63 -51.93 -0.40 0.64 16 31 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 32 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 33 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.64 8.08 -51.93 -0.42 1.22 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.10 2.48 8.14 -51.93 -0.42 2.06 16 LS Contribution 295.99 15.07 4.46 4.46 Total: -1.00 -31.86 295.99 -7.81 -39.67 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.12 Total: -0.07 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.31 Total: -11.06 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.11 Total: -38.14 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.86 -7.81 -39.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.397 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds