Wall clock time and date at job start Mon Mar 30 2020 03:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.45755 * 117.94632 * 2 1 4 4 C 1.53097 * 110.38828 * 160.74608 * 3 2 1 5 5 C 1.53346 * 108.52871 * 51.11362 * 4 3 2 6 6 C 1.53071 * 108.42517 * 292.31132 * 5 4 3 7 7 H 1.09003 * 109.39937 * 288.76949 * 6 5 4 8 8 C 1.53002 * 109.40154 * 169.02736 * 6 5 4 9 9 H 1.09003 * 109.47145 * 299.57101 * 8 6 5 10 10 C 1.50697 * 109.47282 * 179.56899 * 8 6 5 11 11 H 1.08000 * 119.99911 * 305.34012 * 10 8 6 12 12 C 1.37874 * 120.00129 * 125.33471 * 10 8 6 13 13 N 1.31519 * 120.00026 * 6.06102 * 12 10 8 14 14 Si 1.86799 * 120.00493 * 186.05369 * 12 10 8 15 15 H 1.48503 * 109.46825 * 90.00037 * 14 12 10 16 16 H 1.48501 * 109.47619 * 210.00437 * 14 12 10 17 17 H 1.48507 * 109.46667 * 330.00599 * 14 12 10 18 18 C 1.53002 * 109.47139 * 59.57272 * 8 6 5 19 19 C 1.53002 * 117.49653 * 254.13017 * 18 8 6 20 20 C 1.52997 * 117.50133 * 185.47116 * 18 8 6 21 21 C 1.33354 * 117.95054 * 180.26487 * 2 1 3 22 22 O 1.21287 * 118.23996 * 2.24043 * 21 2 1 23 23 H 1.09004 * 109.46942 * 179.74150 * 1 2 3 24 24 H 1.08992 * 109.47433 * 59.73562 * 1 2 3 25 25 H 1.09004 * 109.46941 * 299.73740 * 1 2 3 26 26 H 1.09002 * 109.29868 * 281.23821 * 3 2 1 27 27 H 1.08995 * 109.29997 * 40.61428 * 3 2 1 28 28 H 1.08999 * 109.81058 * 291.32794 * 4 3 2 29 29 H 1.09003 * 109.68054 * 170.82377 * 4 3 2 30 30 H 1.08998 * 109.67729 * 172.57810 * 5 4 3 31 31 H 1.09002 * 109.67848 * 52.04301 * 5 4 3 32 32 H 0.96994 * 120.00557 * 179.97438 * 13 12 10 33 33 H 1.09001 * 115.55212 * 39.79396 * 18 8 6 34 34 H 1.08996 * 117.49889 * 359.97438 * 19 18 8 35 35 H 1.08998 * 117.49636 * 145.02041 * 19 18 8 36 36 H 1.08998 * 117.50095 * 214.98258 * 20 18 8 37 37 H 1.08997 * 117.49806 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1481 1.2876 0.0000 4 6 3.5948 1.1238 0.4732 5 6 4.2493 0.0003 -0.3398 6 6 3.5838 -1.3242 0.0425 7 1 3.8881 -1.6045 1.0509 8 6 4.0196 -2.4138 -0.9393 9 1 3.7130 -2.1376 -1.9482 10 6 3.3737 -3.7209 -0.5582 11 1 3.4930 -4.1108 0.4419 12 6 2.6303 -4.4189 -1.4861 13 7 2.5826 -4.0076 -2.7344 14 14 1.6911 -5.9491 -0.9706 15 1 0.3249 -5.5668 -0.5316 16 1 1.5980 -6.8839 -2.1207 17 1 2.4037 -6.6129 0.1506 18 6 5.5415 -2.5641 -0.8918 19 6 6.3436 -2.0050 -2.0687 20 6 6.1888 -3.5182 -1.8975 21 6 2.0900 -1.1780 -0.0054 22 8 1.4159 -2.1852 -0.0519 23 1 -0.3633 -1.0277 -0.0046 24 1 -0.3634 0.5179 -0.8875 25 1 -0.3633 0.5098 0.8924 26 1 2.1398 1.6998 -1.0090 27 1 1.6271 1.9718 0.6696 28 1 3.6102 0.8656 1.5321 29 1 4.1401 2.0544 0.3158 30 1 5.3142 -0.0450 -0.1122 31 1 4.1087 0.1878 -1.4043 32 1 2.0600 -4.4988 -3.3874 33 1 5.9898 -2.4978 0.0995 34 1 5.7870 -1.5305 -2.8768 35 1 7.3197 -1.5713 -1.8516 36 1 7.0632 -4.0794 -1.5679 37 1 5.5305 -4.0391 -2.5927 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260469275.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:42 Heat of formation + Delta-G solvation = -32.025730 kcal Electronic energy + Delta-G solvation = -18041.424750 eV Core-core repulsion = 15397.552142 eV Total energy + Delta-G solvation = -2643.872608 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.28641 -38.42690 -37.08856 -35.15435 -34.17756 -31.48628 -28.58590 -27.85192 -25.52635 -23.74266 -23.07925 -22.62393 -20.73991 -19.36578 -18.31024 -17.25638 -17.15803 -16.55192 -16.38260 -15.73469 -15.17896 -14.89459 -14.56740 -14.07334 -13.85702 -13.61447 -13.36232 -13.08785 -13.03789 -12.87052 -12.40657 -12.27528 -12.13285 -12.01036 -11.80238 -11.67250 -11.33523 -11.08010 -10.65993 -10.53838 -10.16991 -9.96718 -9.41666 -7.98075 -5.90428 1.33045 1.40830 1.43431 2.10029 2.37635 2.52989 3.29024 3.46300 3.95002 4.02888 4.05967 4.23573 4.28919 4.48700 4.51247 4.55246 4.58690 4.71209 4.75547 4.82165 4.95788 5.00889 5.01704 5.06869 5.16874 5.27646 5.34278 5.35524 5.51460 5.61406 5.73907 5.80195 5.85081 6.00753 6.45496 6.81090 7.10243 7.68081 7.70016 9.12308 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019591 B = 0.012304 C = 0.008253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.865448 B = 2275.097674 C = 3391.703312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.626 5.626 3 C 0.112 3.888 4 C -0.127 4.127 5 C -0.108 4.108 6 C -0.086 4.086 7 H 0.080 0.920 8 C 0.076 3.924 9 H 0.029 0.971 10 C -0.463 4.463 11 H 0.030 0.970 12 C 0.037 3.963 13 N -0.930 5.930 14 Si 0.924 3.076 15 H -0.296 1.296 16 H -0.287 1.287 17 H -0.269 1.269 18 C -0.125 4.125 19 C -0.169 4.169 20 C -0.183 4.183 21 C 0.502 3.498 22 O -0.558 6.558 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.051 0.949 32 H 0.249 0.751 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.690 13.896 5.531 15.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.362 5.362 3 C -0.010 4.010 4 C -0.164 4.164 5 C -0.146 4.146 6 C -0.108 4.108 7 H 0.098 0.902 8 C 0.057 3.943 9 H 0.048 0.952 10 C -0.502 4.502 11 H 0.049 0.951 12 C -0.160 4.160 13 N -0.572 5.572 14 Si 0.753 3.247 15 H -0.223 1.223 16 H -0.213 1.213 17 H -0.194 1.194 18 C -0.143 4.143 19 C -0.206 4.206 20 C -0.221 4.221 21 C 0.291 3.709 22 O -0.434 6.434 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.116 0.884 28 H 0.090 0.910 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.278 13.299 5.352 14.706 hybrid contribution -1.109 -1.421 -0.112 1.806 sum 2.169 11.878 5.240 13.162 Atomic orbital electron populations 1.21646 0.80485 1.02595 1.02171 1.47523 1.07359 1.06679 1.74621 1.21602 0.93956 0.83388 1.02055 1.21927 0.94215 1.00203 1.00089 1.21682 1.00769 0.92457 0.99698 1.21287 0.89629 0.98227 1.01607 0.90178 1.18348 0.89727 0.91675 0.94559 0.95236 1.20895 1.28278 1.05440 0.95547 0.95146 1.25141 0.96650 0.99225 0.94949 1.69977 1.43244 1.41532 1.02484 0.86090 0.79674 0.81232 0.77697 1.22297 1.21329 1.19391 1.22338 0.95306 1.03172 0.93511 1.22958 1.01511 0.95409 1.00701 1.22647 1.01988 0.93045 1.04378 1.20700 0.92160 0.82599 0.75430 1.90716 1.66567 1.37160 1.48969 0.93017 0.91668 0.90042 0.91847 0.88444 0.91016 0.86863 0.89429 0.93012 0.94184 0.88502 0.91012 0.86956 0.88703 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.30 10.48 127.77 1.34 3.64 16 2 N -0.63 -21.65 3.21 -851.27 -2.73 -24.38 16 3 C 0.11 2.59 6.40 86.55 0.55 3.15 16 4 C -0.13 -2.70 6.03 30.74 0.19 -2.51 16 5 C -0.11 -3.21 4.82 30.73 0.15 -3.06 16 6 C -0.09 -3.52 2.05 -11.68 -0.02 -3.54 16 7 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 8 C 0.08 3.74 1.73 -11.54 -0.02 3.72 16 9 H 0.03 1.69 6.77 -2.39 -0.02 1.67 16 10 C -0.46 -26.77 5.92 25.60 0.15 -26.62 16 11 H 0.03 1.80 7.82 -2.91 -0.02 1.78 16 12 C 0.04 2.23 4.90 84.65 0.41 2.64 16 13 N -0.93 -58.36 12.64 21.45 0.27 -58.09 16 14 Si 0.92 49.70 29.54 68.60 2.03 51.73 16 15 H -0.30 -16.47 7.11 99.48 0.71 -15.76 16 16 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 17 H -0.27 -13.87 7.11 99.48 0.71 -13.16 16 18 C -0.12 -5.12 4.01 -10.79 -0.04 -5.16 16 19 C -0.17 -5.96 10.15 30.62 0.31 -5.65 16 20 C -0.18 -7.64 10.02 30.62 0.31 -7.33 16 21 C 0.50 22.64 7.04 87.71 0.62 23.26 16 22 O -0.56 -31.32 12.91 -3.05 -0.04 -31.36 16 23 H 0.05 2.02 6.59 -2.39 -0.02 2.00 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.10 1.63 8.10 -2.39 -0.02 1.61 16 28 H 0.07 1.50 8.12 -2.39 -0.02 1.48 16 29 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 2.27 7.63 -2.39 -0.02 2.25 16 31 H 0.05 1.67 8.09 -2.39 -0.02 1.65 16 32 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 33 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 34 H 0.07 2.72 8.08 -2.39 -0.02 2.70 16 35 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -74.74 295.99 4.49 -70.25 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 1.03 Total: 9.31 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: 3.94 Total: -17.45 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -2.46 Total: -82.47 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -0.04 Total: -31.36 kcal Atomic # 14 Polarization: 49.70 SS G_CDS: 2.03 Total: 51.73 kcal Total: -74.74 4.49 -70.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469275.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.221 kcal (2) G-P(sol) polarization free energy of solvation -74.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds