Wall clock time and date at job start Mon Mar 30 2020 03:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21276 * 119.99890 * 2 1 4 4 N 1.34777 * 119.99714 * 180.02562 * 2 1 3 5 5 C 1.47064 * 136.06025 * 0.04794 * 4 2 1 6 6 C 1.53612 * 88.00261 * 152.89487 * 5 4 2 7 7 C 1.47071 * 136.05214 * 179.97438 * 4 2 1 8 8 H 1.09005 * 113.46200 * 92.31833 * 7 4 2 9 9 C 1.52998 * 113.47060 * 321.94112 * 7 4 2 10 10 H 1.09003 * 109.46621 * 205.41414 * 9 7 4 11 11 C 1.53007 * 109.46900 * 325.40868 * 9 7 4 12 12 C 1.50700 * 109.46984 * 185.00434 * 11 9 7 13 13 H 1.07997 * 119.99995 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99715 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00042 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99792 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47214 * 89.99851 * 16 14 12 18 18 H 1.48503 * 109.47342 * 209.99740 * 16 14 12 19 19 H 1.48495 * 109.47222 * 330.00066 * 16 14 12 20 20 C 1.52989 * 109.47436 * 85.40867 * 9 7 4 21 21 C 1.53000 * 117.50008 * 128.62226 * 20 9 7 22 22 C 1.52997 * 60.00347 * 252.51154 * 21 20 9 23 23 H 1.09003 * 109.46519 * 270.00266 * 1 2 3 24 24 H 1.08995 * 109.46977 * 29.99714 * 1 2 3 25 25 H 1.09000 * 109.46962 * 149.99941 * 1 2 3 26 26 H 1.08996 * 113.47143 * 267.62673 * 5 4 2 27 27 H 1.08999 * 113.46662 * 38.07079 * 5 4 2 28 28 H 1.09003 * 114.21056 * 272.45331 * 6 5 4 29 29 H 1.09008 * 114.23676 * 139.59347 * 6 5 4 30 30 H 1.08998 * 109.46784 * 305.00204 * 11 9 7 31 31 H 1.08993 * 109.46737 * 65.00322 * 11 9 7 32 32 H 0.97002 * 119.99658 * 180.02562 * 15 14 12 33 33 H 1.09004 * 115.56709 * 274.30959 * 20 9 7 34 34 H 1.09002 * 117.49696 * 0.02562 * 21 20 9 35 35 H 1.09002 * 117.50343 * 145.02258 * 21 20 9 36 36 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 37 37 H 1.08999 * 117.52022 * 107.47599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5945 -0.0020 6 6 3.1663 -2.8712 -0.7008 7 6 3.5942 -1.5740 -0.0012 8 1 4.0005 -1.7331 0.9978 9 6 4.4851 -0.6804 -0.8665 10 1 5.3591 -1.2447 -1.1917 11 6 3.6982 -0.2084 -2.0909 12 6 4.6098 0.5695 -3.0045 13 1 5.6466 0.7133 -2.7384 14 6 4.1200 1.0986 -4.1798 15 7 2.8574 0.9240 -4.5036 16 14 5.2498 2.0635 -5.3120 17 1 5.8850 1.1376 -6.2839 18 1 4.4606 3.0856 -6.0452 19 1 6.3021 2.7342 -4.5071 20 6 4.9359 0.5331 -0.0511 21 6 6.4335 0.8442 -0.0165 22 6 5.7430 0.2688 1.2216 23 1 -0.3632 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.7614 -3.0267 0.9965 27 1 0.9585 -2.8256 -0.6194 28 1 3.1265 -2.8004 -1.7877 29 1 3.6816 -3.7629 -0.3434 30 1 3.3017 -1.0729 -2.6232 31 1 2.8750 0.4296 -1.7697 32 1 2.5129 1.2959 -5.3306 33 1 4.2463 1.3772 -0.0435 34 1 7.0976 0.1845 -0.5750 35 1 6.7292 1.8929 0.0139 36 1 5.5843 0.9390 2.0665 37 1 5.9524 -0.7697 1.4781 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:33 Heat of formation + Delta-G solvation = 22.013870 kcal Electronic energy + Delta-G solvation = -17892.960904 eV Core-core repulsion = 15251.431628 eV Total energy + Delta-G solvation = -2641.529276 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24584 -37.28471 -36.51911 -32.98735 -31.03560 -29.97884 -27.94488 -26.39698 -23.45352 -22.17639 -21.60547 -21.10444 -19.44590 -17.65986 -16.51288 -16.31082 -15.19958 -15.04484 -14.74001 -14.27546 -13.96139 -13.61153 -12.73511 -12.65611 -12.21396 -12.08743 -11.79137 -11.76438 -11.30234 -11.25244 -11.00799 -10.91605 -10.71593 -10.48902 -10.18099 -9.84736 -9.46195 -9.25352 -9.04994 -8.82599 -8.63958 -8.18089 -8.00873 -5.82717 -3.80343 3.31293 3.37685 3.40564 3.46729 3.51371 4.59390 4.64285 4.74947 4.97945 5.32277 5.36623 5.50242 5.54515 5.60226 5.65355 5.69903 5.74339 5.77019 5.82755 6.02724 6.03403 6.17873 6.22166 6.28270 6.46730 6.57282 6.72824 6.79282 6.82293 7.29964 7.43156 7.86192 8.09266 8.24832 8.37208 8.64972 8.88547 9.26838 9.80549 11.29164 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.009846 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.995732 B = 2843.153215 C = 3398.173891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.538 3.462 3 O -0.521 6.521 4 N -0.635 5.635 5 C 0.099 3.901 6 C -0.156 4.156 7 C 0.138 3.862 8 H 0.078 0.922 9 C -0.056 4.056 10 H 0.063 0.937 11 C 0.027 3.973 12 C -0.502 4.502 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.884 3.116 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.101 4.101 21 C -0.180 4.180 22 C -0.206 4.206 23 H 0.082 0.918 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.008 0.992 31 H 0.045 0.955 32 H 0.256 0.744 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 -8.175 10.532 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.329 3.671 3 O -0.396 6.396 4 N -0.372 5.372 5 C -0.025 4.025 6 C -0.194 4.194 7 C 0.035 3.965 8 H 0.096 0.904 9 C -0.075 4.075 10 H 0.081 0.919 11 C -0.010 4.010 12 C -0.541 4.541 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.713 3.287 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.200 1.200 20 C -0.119 4.119 21 C -0.217 4.217 22 C -0.243 4.243 23 H 0.101 0.899 24 H 0.109 0.891 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.097 0.903 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.363 -7.318 10.404 12.937 hybrid contribution 0.593 0.518 -0.693 1.049 sum -1.770 -6.800 9.711 11.986 Atomic orbital electron populations 1.21791 0.92527 1.04605 1.03396 1.20038 0.89431 0.81881 0.75797 1.90697 1.69974 1.30203 1.48751 1.49635 1.09053 1.04668 1.73828 1.22868 0.98842 0.81039 0.99725 1.23596 0.96105 0.97351 1.02316 1.22769 0.83438 0.92165 0.98132 0.90430 1.21035 0.97427 0.92970 0.96083 0.91888 1.19297 0.95991 0.96105 0.89561 1.21277 0.96305 1.32560 1.03926 0.92825 1.24954 0.94851 0.96647 0.98043 1.69966 1.13372 1.46545 1.24043 0.86716 0.80956 0.80009 0.81036 1.21006 1.21482 1.20010 1.22392 0.92931 1.01222 0.95313 1.22828 0.97406 1.00608 1.00856 1.22915 1.08373 1.00482 0.92504 0.89895 0.89101 0.90805 0.90651 0.90856 0.87741 0.90273 0.97389 0.93714 0.93470 0.86377 0.89605 0.90009 0.90267 0.90081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.19 36.01 0.37 -1.96 16 2 C 0.54 10.36 6.86 -10.98 -0.08 10.29 16 3 O -0.52 -12.37 13.06 5.56 0.07 -12.30 16 4 N -0.63 -10.87 3.02 -177.24 -0.53 -11.41 16 5 C 0.10 1.23 8.26 -8.44 -0.07 1.16 16 6 C -0.16 -2.16 7.84 -26.17 -0.21 -2.37 16 7 C 0.14 2.33 3.74 -72.40 -0.27 2.06 16 8 H 0.08 1.19 7.17 -51.93 -0.37 0.82 16 9 C -0.06 -1.19 1.86 -90.62 -0.17 -1.36 16 10 H 0.06 1.32 7.90 -51.93 -0.41 0.91 16 11 C 0.03 0.72 3.69 -27.88 -0.10 0.61 16 12 C -0.50 -14.63 8.61 -34.44 -0.30 -14.93 16 13 H 0.05 1.54 7.34 -52.49 -0.39 1.15 16 14 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.89 13.29 55.43 0.74 -27.15 16 16 Si 0.88 22.73 29.54 -169.99 -5.02 17.71 16 17 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 20 C -0.10 -2.13 3.87 -90.62 -0.35 -2.48 16 21 C -0.18 -3.43 9.90 -26.73 -0.26 -3.69 16 22 C -0.21 -3.55 9.59 -26.73 -0.26 -3.80 16 23 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 25 H 0.07 0.92 7.76 -51.93 -0.40 0.51 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 28 H 0.10 1.71 6.59 -51.93 -0.34 1.37 16 29 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 30 H 0.01 0.22 6.51 -51.93 -0.34 -0.12 16 31 H 0.04 1.29 4.52 -51.93 -0.23 1.06 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.12 2.94 6.09 -51.93 -0.32 2.62 16 34 H 0.09 1.59 8.05 -51.93 -0.42 1.17 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.25 7.72 -51.93 -0.40 0.85 16 LS Contribution 294.86 15.07 4.44 4.44 Total: -1.00 -34.02 294.86 -7.80 -41.82 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.71 Total: 1.83 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.79 Total: -14.94 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.20 Total: -38.56 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.02 -7.80 -41.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.836 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds