Wall clock time and date at job start Mon Mar 30 2020 03:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21276 * 119.99890 * 2 1 4 4 N 1.34777 * 119.99714 * 180.02562 * 2 1 3 5 5 C 1.47064 * 136.06025 * 0.04794 * 4 2 1 6 6 C 1.53612 * 88.00261 * 152.89487 * 5 4 2 7 7 C 1.47071 * 136.05214 * 179.97438 * 4 2 1 8 8 H 1.09005 * 113.46200 * 92.31833 * 7 4 2 9 9 C 1.52998 * 113.47060 * 321.94112 * 7 4 2 10 10 H 1.09003 * 109.46621 * 205.41414 * 9 7 4 11 11 C 1.53007 * 109.46900 * 325.40868 * 9 7 4 12 12 C 1.50700 * 109.46984 * 185.00434 * 11 9 7 13 13 H 1.07997 * 119.99995 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99715 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00042 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99792 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47214 * 89.99851 * 16 14 12 18 18 H 1.48503 * 109.47342 * 209.99740 * 16 14 12 19 19 H 1.48495 * 109.47222 * 330.00066 * 16 14 12 20 20 C 1.52989 * 109.47436 * 85.40867 * 9 7 4 21 21 C 1.53000 * 117.50008 * 128.62226 * 20 9 7 22 22 C 1.52997 * 60.00347 * 252.51154 * 21 20 9 23 23 H 1.09003 * 109.46519 * 270.00266 * 1 2 3 24 24 H 1.08995 * 109.46977 * 29.99714 * 1 2 3 25 25 H 1.09000 * 109.46962 * 149.99941 * 1 2 3 26 26 H 1.08996 * 113.47143 * 267.62673 * 5 4 2 27 27 H 1.08999 * 113.46662 * 38.07079 * 5 4 2 28 28 H 1.09003 * 114.21056 * 272.45331 * 6 5 4 29 29 H 1.09008 * 114.23676 * 139.59347 * 6 5 4 30 30 H 1.08998 * 109.46784 * 305.00204 * 11 9 7 31 31 H 1.08993 * 109.46737 * 65.00322 * 11 9 7 32 32 H 0.97002 * 119.99658 * 180.02562 * 15 14 12 33 33 H 1.09004 * 115.56709 * 274.30959 * 20 9 7 34 34 H 1.09002 * 117.49696 * 0.02562 * 21 20 9 35 35 H 1.09002 * 117.50343 * 145.02258 * 21 20 9 36 36 H 1.08999 * 117.49685 * 252.51237 * 22 21 20 37 37 H 1.08999 * 117.52022 * 107.47599 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.8265 -2.5945 -0.0020 6 6 3.1663 -2.8712 -0.7008 7 6 3.5942 -1.5740 -0.0012 8 1 4.0005 -1.7331 0.9978 9 6 4.4851 -0.6804 -0.8665 10 1 5.3591 -1.2447 -1.1917 11 6 3.6982 -0.2084 -2.0909 12 6 4.6098 0.5695 -3.0045 13 1 5.6466 0.7133 -2.7384 14 6 4.1200 1.0986 -4.1798 15 7 2.8574 0.9240 -4.5036 16 14 5.2498 2.0635 -5.3120 17 1 5.8850 1.1376 -6.2839 18 1 4.4606 3.0856 -6.0452 19 1 6.3021 2.7342 -4.5071 20 6 4.9359 0.5331 -0.0511 21 6 6.4335 0.8442 -0.0165 22 6 5.7430 0.2688 1.2216 23 1 -0.3632 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 1.7614 -3.0267 0.9965 27 1 0.9585 -2.8256 -0.6194 28 1 3.1265 -2.8004 -1.7877 29 1 3.6816 -3.7629 -0.3434 30 1 3.3017 -1.0729 -2.6232 31 1 2.8750 0.4296 -1.7697 32 1 2.5129 1.2959 -5.3306 33 1 4.2463 1.3772 -0.0435 34 1 7.0976 0.1845 -0.5750 35 1 6.7292 1.8929 0.0139 36 1 5.5843 0.9390 2.0665 37 1 5.9524 -0.7697 1.4781 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260501042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:33 Heat of formation + Delta-G solvation = 0.189476 kcal Electronic energy + Delta-G solvation = -17893.907281 eV Core-core repulsion = 15251.431628 eV Total energy + Delta-G solvation = -2642.475652 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.58621 -38.78066 -37.99316 -35.12983 -32.72837 -31.50443 -29.12502 -28.24404 -25.08292 -23.76044 -23.10485 -22.56599 -20.96388 -19.09135 -18.56359 -17.63543 -16.87887 -16.47320 -16.45075 -16.01447 -15.53643 -14.98960 -14.36105 -13.95043 -13.83386 -13.50498 -13.28879 -13.16949 -12.99221 -12.82564 -12.68182 -12.46964 -12.33094 -12.18796 -11.88952 -11.53881 -11.26382 -11.18430 -10.69187 -10.49988 -10.39347 -10.27717 -9.39125 -8.12053 -6.16617 1.33622 1.36034 1.46219 1.91791 2.14917 2.42585 3.11410 3.22347 3.58894 3.81040 3.96752 4.17859 4.21782 4.28367 4.35522 4.47300 4.55762 4.60173 4.67816 4.70741 4.79439 4.80333 4.97480 5.02524 5.05368 5.12705 5.30236 5.32015 5.35919 5.58541 5.62815 5.72397 5.92798 6.11438 6.41043 7.00617 7.08618 7.47143 7.49257 8.99876 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.020300 B = 0.009846 C = 0.008238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.995732 B = 2843.153215 C = 3398.173891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.518 3.482 3 O -0.582 6.582 4 N -0.645 5.645 5 C 0.108 3.892 6 C -0.148 4.148 7 C 0.128 3.872 8 H 0.106 0.894 9 C -0.049 4.049 10 H 0.061 0.939 11 C 0.039 3.961 12 C -0.518 4.518 13 H 0.051 0.949 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.950 3.050 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.271 1.271 20 C -0.130 4.130 21 C -0.187 4.187 22 C -0.165 4.165 23 H 0.116 0.884 24 H 0.075 0.925 25 H 0.094 0.906 26 H 0.119 0.881 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.121 0.879 30 H -0.015 1.015 31 H 0.016 0.984 32 H 0.257 0.743 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.844 -10.153 12.015 15.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.310 3.690 3 O -0.463 6.463 4 N -0.381 5.381 5 C -0.014 4.014 6 C -0.185 4.185 7 C 0.025 3.975 8 H 0.123 0.877 9 C -0.067 4.067 10 H 0.080 0.920 11 C 0.002 3.998 12 C -0.557 4.557 13 H 0.070 0.930 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.776 3.224 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.195 1.195 20 C -0.149 4.149 21 C -0.225 4.225 22 C -0.202 4.202 23 H 0.134 0.866 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.137 0.863 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.139 0.861 30 H 0.003 0.997 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.785 -9.354 11.891 15.234 hybrid contribution 0.418 1.123 -1.147 1.659 sum -1.367 -8.231 10.744 13.603 Atomic orbital electron populations 1.21770 0.89099 1.04850 1.05604 1.20964 0.91338 0.81748 0.74995 1.90669 1.71461 1.32486 1.51680 1.49870 1.09556 1.06183 1.72465 1.23164 0.98419 0.77724 1.02068 1.23504 0.97451 0.97326 1.00253 1.22976 0.82947 0.92574 0.98995 0.87652 1.20816 0.97420 0.93702 0.94810 0.92030 1.19067 0.95297 0.94242 0.91173 1.21714 0.96658 1.32688 1.04611 0.93041 1.25829 0.96403 0.97852 0.99884 1.70101 1.15142 1.47729 1.24630 0.85666 0.78979 0.78684 0.79050 1.19481 1.21199 1.19536 1.22109 0.93217 1.00301 0.99250 1.22903 0.96053 1.00933 1.02565 1.22969 1.03924 1.02197 0.91076 0.86586 0.90578 0.88728 0.86324 0.89597 0.91158 0.86051 0.99720 0.96594 0.93443 0.90845 0.89060 0.90277 0.89210 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 10.19 71.24 0.73 -3.56 16 2 C 0.52 20.27 6.86 87.66 0.60 20.87 16 3 O -0.58 -29.29 13.06 -3.02 -0.04 -29.33 16 4 N -0.64 -21.44 3.02 -833.06 -2.51 -23.95 16 5 C 0.11 2.30 8.26 83.22 0.69 2.99 16 6 C -0.15 -3.73 7.84 30.96 0.24 -3.48 16 7 C 0.13 4.12 3.74 41.79 0.16 4.28 16 8 H 0.11 2.83 7.17 -2.38 -0.02 2.81 16 9 C -0.05 -2.07 1.86 -10.80 -0.02 -2.09 16 10 H 0.06 2.58 7.90 -2.39 -0.02 2.56 16 11 C 0.04 2.15 3.69 29.85 0.11 2.26 16 12 C -0.52 -31.28 8.61 25.60 0.22 -31.06 16 13 H 0.05 3.04 7.34 -2.91 -0.02 3.02 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 15 N -0.93 -60.00 13.29 21.45 0.28 -59.71 16 16 Si 0.95 47.66 29.54 68.60 2.03 49.69 16 17 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 19 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 20 C -0.13 -5.60 3.87 -10.80 -0.04 -5.64 16 21 C -0.19 -7.05 9.90 30.59 0.30 -6.75 16 22 C -0.16 -5.33 9.59 30.60 0.29 -5.04 16 23 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 25 H 0.09 2.19 7.76 -2.39 -0.02 2.17 16 26 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.09 1.65 7.96 -2.39 -0.02 1.63 16 28 H 0.07 2.29 6.59 -2.39 -0.02 2.27 16 29 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 30 H -0.02 -0.90 6.51 -2.39 -0.02 -0.91 16 31 H 0.02 0.97 4.52 -2.39 -0.01 0.96 16 32 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.07 3.87 6.09 -2.38 -0.01 3.86 16 34 H 0.09 3.30 8.05 -2.39 -0.02 3.28 16 35 H 0.08 2.95 8.14 -2.39 -0.02 2.94 16 36 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.11 2.94 7.72 -2.39 -0.02 2.92 16 Total: -1.00 -79.52 294.86 4.55 -74.97 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 1.04 Total: 15.31 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 3.74 Total: -26.98 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -2.23 Total: -83.66 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.04 Total: -29.33 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -79.52 4.55 -74.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.163 kcal (2) G-P(sol) polarization free energy of solvation -79.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds