Wall clock time and date at job start Mon Mar 30 2020 03:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21277 * 120.00034 * 2 1 4 4 N 1.34773 * 119.99814 * 179.97438 * 2 1 3 5 5 C 1.47808 * 134.45997 * 359.86771 * 4 2 1 6 6 C 1.53944 * 86.04137 * 204.64640 * 5 4 2 7 7 C 1.47587 * 134.48989 * 180.02562 * 4 2 1 8 8 H 1.08996 * 113.86908 * 269.66832 * 7 4 2 9 9 C 1.52996 * 113.77210 * 41.05551 * 7 4 2 10 10 H 1.08996 * 109.47440 * 156.49593 * 9 7 4 11 11 C 1.53009 * 109.47154 * 36.49337 * 9 7 4 12 12 C 1.50695 * 109.47121 * 166.96984 * 11 9 7 13 13 H 1.08002 * 119.99857 * 354.12868 * 12 11 9 14 14 C 1.37880 * 120.00032 * 174.12338 * 12 11 9 15 15 N 1.31506 * 119.99804 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99965 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47090 * 90.00084 * 16 14 12 18 18 H 1.48497 * 109.47012 * 210.00291 * 16 14 12 19 19 H 1.48497 * 109.47051 * 330.00338 * 16 14 12 20 20 C 1.53002 * 109.47215 * 276.49653 * 9 7 4 21 21 C 1.53001 * 117.49656 * 252.27359 * 20 9 7 22 22 C 1.52998 * 117.50051 * 183.64784 * 20 9 7 23 23 H 1.08997 * 109.47838 * 270.00270 * 1 2 3 24 24 H 1.09007 * 109.46908 * 30.00578 * 1 2 3 25 25 H 1.08997 * 109.47199 * 149.99608 * 1 2 3 26 26 H 1.08999 * 113.77363 * 90.37737 * 5 4 2 27 27 H 1.09007 * 113.83523 * 318.92124 * 5 4 2 28 28 H 1.08994 * 113.74564 * 222.08649 * 6 5 4 29 29 H 1.08999 * 113.74247 * 90.87911 * 6 5 4 30 30 H 1.09000 * 109.46700 * 286.97104 * 11 9 7 31 31 H 1.09002 * 109.46548 * 46.97051 * 11 9 7 32 32 H 0.97000 * 120.00127 * 179.97438 * 15 14 12 33 33 H 1.09002 * 115.55116 * 37.97298 * 20 9 7 34 34 H 1.08998 * 117.50012 * 359.97438 * 21 20 9 35 35 H 1.08999 * 117.50091 * 145.02248 * 21 20 9 36 36 H 1.08992 * 117.49860 * 214.97844 * 22 20 9 37 37 H 1.08997 * 117.49737 * 359.97382 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.7847 -2.5912 0.0036 6 6 3.1593 -2.8618 0.6417 7 6 3.6097 -1.5365 0.0012 8 1 4.0357 -1.6527 -0.9954 9 6 4.4707 -0.6684 0.9209 10 1 5.3710 -1.2160 1.1993 11 6 3.6769 -0.3175 2.1811 12 6 4.6083 0.2551 3.2182 13 1 5.6731 0.2710 3.0378 14 6 4.1013 0.7587 4.3973 15 7 2.8048 0.7390 4.6170 16 14 5.2558 1.4691 5.6825 17 1 5.4422 2.9209 5.4320 18 1 4.6739 1.2707 7.0343 19 1 6.5690 0.7805 5.6029 20 6 4.8614 0.6175 0.1898 21 6 6.3158 0.7579 -0.2643 22 6 5.7991 1.5853 0.9145 23 1 -0.3635 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8899 -0.5139 26 1 1.6713 -3.0179 -0.9930 27 1 0.9439 -2.8132 0.6608 28 1 3.6655 -3.7387 0.2382 29 1 3.1490 -2.8410 1.7315 30 1 2.9110 0.4179 1.9349 31 1 3.2038 -1.2171 2.5747 32 1 2.4481 1.0929 5.4467 33 1 4.0905 1.0476 -0.4497 34 1 6.9942 -0.0657 -0.0418 35 1 6.5019 1.2804 -1.2026 36 1 5.6452 2.6519 0.7517 37 1 6.1372 1.3060 1.9124 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260501043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:36 Heat of formation + Delta-G solvation = 21.623233 kcal Electronic energy + Delta-G solvation = -17934.285274 eV Core-core repulsion = 15292.739059 eV Total energy + Delta-G solvation = -2641.546215 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.08554 -37.20845 -36.48251 -32.85509 -31.06279 -29.89138 -27.89284 -26.65323 -23.54734 -22.11681 -21.37122 -20.98814 -19.28813 -17.69655 -16.70268 -16.35882 -15.29034 -15.07495 -14.44813 -14.27277 -13.78354 -13.53010 -12.69462 -12.59185 -12.20006 -12.03642 -11.87562 -11.76518 -11.44302 -11.25483 -10.98029 -10.79176 -10.63078 -10.49378 -10.20657 -9.63399 -9.56000 -9.25159 -8.93171 -8.67573 -8.51697 -8.19548 -8.03341 -5.86463 -3.83923 3.30684 3.33444 3.38349 3.44599 3.46576 4.55772 4.82478 4.84835 4.95418 5.34773 5.36938 5.47504 5.49471 5.62584 5.69913 5.76901 5.84670 5.89939 5.95033 6.05283 6.05855 6.22364 6.34896 6.38741 6.62809 6.71159 6.80309 6.92397 7.12287 7.26493 7.45292 7.87624 8.06007 8.23397 8.32112 8.59409 8.86730 9.21502 9.75478 11.25267 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.009665 C = 0.008422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.922856 B = 2896.311787 C = 3323.865904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.532 3.468 3 O -0.525 6.525 4 N -0.634 5.634 5 C 0.099 3.901 6 C -0.153 4.153 7 C 0.141 3.859 8 H 0.078 0.922 9 C -0.056 4.056 10 H 0.064 0.936 11 C 0.033 3.967 12 C -0.505 4.505 13 H 0.057 0.943 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.881 3.119 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.119 4.119 21 C -0.214 4.214 22 C -0.166 4.166 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.041 0.959 31 H 0.006 0.994 32 H 0.256 0.744 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.311 -7.368 -10.138 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.322 3.678 3 O -0.401 6.401 4 N -0.371 5.371 5 C -0.024 4.024 6 C -0.191 4.191 7 C 0.039 3.961 8 H 0.096 0.904 9 C -0.075 4.075 10 H 0.083 0.917 11 C -0.004 4.004 12 C -0.543 4.543 13 H 0.075 0.925 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.710 3.290 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.200 1.200 20 C -0.137 4.137 21 C -0.251 4.251 22 C -0.203 4.203 23 H 0.110 0.890 24 H 0.104 0.896 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.122 0.878 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.245 -6.540 -10.010 12.166 hybrid contribution 0.494 0.454 0.781 1.029 sum -1.751 -6.087 -9.228 11.193 Atomic orbital electron populations 1.21807 0.92699 1.03441 1.04560 1.20206 0.89610 0.82338 0.75659 1.90687 1.69849 1.30394 1.49199 1.50099 1.08567 1.04601 1.73825 1.23105 0.98726 0.80696 0.99877 1.23698 0.95339 0.97083 1.02940 1.22906 0.82730 0.92257 0.98212 0.90386 1.20986 0.97685 0.92662 0.96123 0.91744 1.19179 0.95620 0.96614 0.89018 1.21334 0.93231 1.38723 1.00996 0.92518 1.24942 0.94773 0.96399 0.98229 1.69959 1.11234 1.47142 1.25258 0.86762 0.81224 0.79676 0.81352 1.20799 1.21463 1.20030 1.22336 0.91030 0.98457 1.01906 1.23025 0.99143 1.04012 0.98898 1.23086 1.03837 0.95998 0.97355 0.88983 0.89581 0.91223 0.90557 0.90435 0.90739 0.87761 0.94077 0.97546 0.93397 0.87092 0.90116 0.90781 0.90802 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.14 36.00 0.37 -1.99 16 2 C 0.53 10.18 6.94 -10.99 -0.08 10.10 16 3 O -0.52 -12.37 12.88 5.56 0.07 -12.30 16 4 N -0.63 -10.81 2.92 -170.98 -0.50 -11.31 16 5 C 0.10 1.23 8.40 -2.84 -0.02 1.20 16 6 C -0.15 -2.14 7.59 -25.81 -0.20 -2.33 16 7 C 0.14 2.41 4.05 -66.86 -0.27 2.14 16 8 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 9 C -0.06 -1.18 1.94 -90.62 -0.18 -1.35 16 10 H 0.06 1.35 7.86 -51.93 -0.41 0.94 16 11 C 0.03 0.84 3.59 -27.88 -0.10 0.74 16 12 C -0.50 -14.24 7.39 -34.44 -0.25 -14.49 16 13 H 0.06 1.56 5.59 -52.49 -0.29 1.27 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 16 Si 0.88 22.23 29.54 -169.99 -5.02 17.21 16 17 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 C -0.12 -2.56 4.37 -90.62 -0.40 -2.95 16 21 C -0.21 -3.96 10.18 -26.73 -0.27 -4.23 16 22 C -0.17 -3.62 9.36 -26.73 -0.25 -3.87 16 23 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 24 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.07 0.77 7.85 -51.93 -0.41 0.36 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.10 1.72 6.36 -51.93 -0.33 1.39 16 30 H 0.04 1.20 5.33 -51.93 -0.28 0.92 16 31 H 0.01 0.17 6.12 -51.93 -0.32 -0.14 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.11 2.57 5.62 -51.93 -0.29 2.28 16 34 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.58 8.14 -51.93 -0.42 1.15 16 37 H 0.12 2.72 4.98 -51.93 -0.26 2.46 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -33.32 290.56 -7.60 -40.92 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.52 Total: 3.28 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -1.75 Total: -15.48 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.24 Total: -38.02 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.07 Total: -12.30 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -33.32 -7.60 -40.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260501043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.546 kcal (2) G-P(sol) polarization free energy of solvation -33.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds