Wall clock time and date at job start Mon Mar 30 2020 03:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46769 * 124.35298 * 2 1 4 4 C 1.54481 * 105.47571 * 162.98506 * 3 2 1 5 5 C 1.54634 * 101.76196 * 25.41505 * 4 3 2 6 6 H 1.08999 * 110.48605 * 216.39056 * 5 4 3 7 7 C 1.52999 * 110.48375 * 93.88178 * 5 4 3 8 8 H 1.08997 * 109.47541 * 305.27800 * 7 5 4 9 9 C 1.50700 * 109.46930 * 185.27626 * 7 5 4 10 10 H 1.07998 * 120.00119 * 303.38282 * 9 7 5 11 11 C 1.37878 * 119.99988 * 123.39140 * 9 7 5 12 12 N 1.31519 * 120.00098 * 171.48812 * 11 9 7 13 13 Si 1.86806 * 119.99950 * 351.47810 * 11 9 7 14 14 H 1.48495 * 109.46661 * 90.14555 * 13 11 9 15 15 H 1.48497 * 109.47025 * 210.14338 * 13 11 9 16 16 H 1.48496 * 109.46854 * 330.14774 * 13 11 9 17 17 C 1.53001 * 109.47424 * 65.27579 * 7 5 4 18 18 C 1.53792 * 113.61237 * 65.91479 * 17 7 5 19 19 C 1.53777 * 87.07861 * 139.98318 * 18 17 7 20 20 C 1.53777 * 87.17754 * 334.52540 * 19 18 17 21 21 C 1.34424 * 124.34966 * 180.02562 * 2 1 3 22 22 O 1.21282 * 124.93787 * 0.43902 * 21 2 1 23 23 H 1.08995 * 109.47106 * 89.99786 * 1 2 3 24 24 H 1.08996 * 109.47233 * 210.00262 * 1 2 3 25 25 H 1.09003 * 109.46591 * 329.99850 * 1 2 3 26 26 H 1.08996 * 110.24343 * 43.98338 * 3 2 1 27 27 H 1.09001 * 110.31502 * 282.02353 * 3 2 1 28 28 H 1.08998 * 110.96906 * 267.30398 * 4 3 2 29 29 H 1.08994 * 111.00388 * 143.54419 * 4 3 2 30 30 H 0.96997 * 119.99461 * 179.97438 * 12 11 9 31 31 H 1.08998 * 112.85119 * 294.72359 * 17 7 5 32 32 H 1.08997 * 113.60888 * 25.43571 * 18 17 7 33 33 H 1.08992 * 113.68951 * 254.54134 * 18 17 7 34 34 H 1.09001 * 113.61573 * 89.11550 * 19 18 17 35 35 H 1.09004 * 113.61601 * 219.93609 * 19 18 17 36 36 H 1.09001 * 113.61677 * 140.01934 * 20 19 18 37 37 H 1.08995 * 113.61940 * 270.92882 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7011 0.7487 0.4357 5 6 3.6897 -0.7379 0.0100 6 1 4.2346 -1.3457 0.7324 7 6 4.2928 -0.8995 -1.3868 8 1 3.7681 -0.2491 -2.0866 9 6 4.1530 -2.3326 -1.8315 10 1 4.5642 -3.1280 -1.2276 11 6 3.5003 -2.6284 -3.0094 12 7 3.5220 -3.8551 -3.4832 13 14 2.5848 -1.2868 -3.9322 14 1 3.5045 -0.6349 -4.8988 15 1 1.4388 -1.8832 -4.6644 16 1 2.0834 -0.2758 -2.9670 17 6 5.7743 -0.5192 -1.3499 18 6 6.6335 -1.4703 -0.5000 19 6 7.7096 -1.3469 -1.5916 20 6 6.5703 -1.0182 -2.5708 21 6 2.2234 -1.1098 -0.0005 22 8 1.7945 -2.2442 -0.0086 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3632 0.8900 0.5139 26 1 1.8985 1.9383 0.7102 27 1 2.3309 1.6443 -0.9998 28 1 3.8269 0.8446 1.5141 29 1 4.4759 1.3007 -0.0962 30 1 3.0625 -4.0631 -4.3117 31 1 5.9352 0.5347 -1.1231 32 1 6.2158 -2.4730 -0.4100 33 1 6.9344 -1.0494 0.4593 34 1 8.4006 -0.5192 -1.4320 35 1 8.2175 -2.2859 -1.8121 36 1 6.8197 -0.2311 -3.2824 37 1 6.1354 -1.8975 -3.0458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260527211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:44 Heat of formation + Delta-G solvation = -15.482530 kcal Electronic energy + Delta-G solvation = -18173.383137 eV Core-core repulsion = 15530.227895 eV Total energy + Delta-G solvation = -2643.155242 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95147 -37.95176 -35.54013 -33.39974 -32.04553 -29.39899 -26.51094 -25.83748 -24.57312 -24.31973 -21.71973 -20.29061 -18.69366 -18.10498 -16.80590 -15.87268 -15.52937 -14.93705 -14.60381 -14.22060 -13.68777 -13.28844 -12.94955 -12.71558 -12.35739 -12.21090 -12.09306 -11.89675 -11.81118 -11.42729 -11.07752 -10.86843 -10.77572 -10.60583 -9.87968 -9.76072 -9.66768 -9.41522 -9.12617 -8.75311 -8.57209 -8.35769 -8.12192 -5.97158 -3.91314 3.31577 3.39540 3.40996 3.54689 3.63909 4.49560 5.02087 5.05058 5.22705 5.35485 5.54070 5.56715 5.62854 5.65560 5.69954 5.77620 5.82826 5.86315 6.00211 6.17023 6.22199 6.31939 6.44580 6.46769 6.59547 6.69010 6.75641 7.01220 7.03493 7.06541 7.18594 7.33226 7.56074 7.79464 7.87999 8.61874 9.10102 9.11928 9.67023 11.16800 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.013306 C = 0.009822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.075587 B = 2103.739384 C = 2849.926060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.641 5.641 3 C 0.110 3.890 4 C -0.138 4.138 5 C -0.104 4.104 6 H 0.093 0.907 7 C 0.036 3.964 8 H 0.037 0.963 9 C -0.487 4.487 10 H 0.077 0.923 11 C 0.081 3.919 12 N -0.896 5.896 13 Si 0.863 3.137 14 H -0.279 1.279 15 H -0.292 1.292 16 H -0.266 1.266 17 C -0.101 4.101 18 C -0.125 4.125 19 C -0.146 4.146 20 C -0.127 4.127 21 C 0.531 3.469 22 O -0.508 6.508 23 H 0.046 0.954 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.261 0.739 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.040 0.960 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.771 11.985 6.231 13.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.379 5.379 3 C -0.014 4.014 4 C -0.176 4.176 5 C -0.126 4.126 6 H 0.111 0.889 7 C 0.017 3.983 8 H 0.055 0.945 9 C -0.525 4.525 10 H 0.095 0.905 11 C -0.121 4.121 12 N -0.534 5.534 13 Si 0.691 3.309 14 H -0.205 1.205 15 H -0.219 1.219 16 H -0.191 1.191 17 C -0.120 4.120 18 C -0.162 4.162 19 C -0.183 4.183 20 C -0.164 4.164 21 C 0.319 3.681 22 O -0.381 6.381 23 H 0.064 0.936 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.383 11.213 6.070 12.756 hybrid contribution -0.729 0.846 -0.677 1.306 sum -0.346 12.059 5.393 13.214 Atomic orbital electron populations 1.21364 0.79598 1.02056 1.01116 1.48219 1.05627 1.07808 1.76199 1.21919 0.91407 0.87290 1.00742 1.22770 0.95861 0.97927 1.01028 1.22172 0.93463 0.94138 1.02869 0.88868 1.19037 0.91222 0.98327 0.89751 0.94454 1.20723 1.35502 0.90230 1.06006 0.90463 1.24953 0.95530 0.94722 0.96857 1.69891 1.43412 1.19017 1.21073 0.87062 0.80507 0.83157 0.80157 1.20485 1.21903 1.19076 1.22658 0.96386 0.96108 0.96868 1.22822 0.96517 1.01647 0.95213 1.22773 0.96468 1.00102 0.98984 1.23022 0.95733 1.02062 0.95618 1.20896 0.89180 0.83848 0.74129 1.90673 1.78346 1.21013 1.48051 0.93583 0.91122 0.91976 0.91599 0.92112 0.91171 0.89522 0.92937 0.92116 0.88929 0.93774 0.92068 0.92544 0.94098 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.54 10.96 59.84 0.66 2.20 16 2 N -0.64 -11.72 3.33 -180.29 -0.60 -12.32 16 3 C 0.11 1.60 7.35 -3.12 -0.02 1.58 16 4 C -0.14 -2.02 6.55 -25.10 -0.16 -2.19 16 5 C -0.10 -2.07 2.37 -90.63 -0.21 -2.28 16 6 H 0.09 1.86 7.61 -51.93 -0.40 1.47 16 7 C 0.04 0.79 1.49 -91.77 -0.14 0.66 16 8 H 0.04 0.86 4.63 -51.93 -0.24 0.62 16 9 C -0.49 -13.13 5.31 -34.44 -0.18 -13.32 16 10 H 0.08 2.32 6.90 -52.49 -0.36 1.96 16 11 C 0.08 2.33 5.27 -17.82 -0.09 2.24 16 12 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 13 Si 0.86 22.07 27.14 -169.99 -4.61 17.46 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -7.69 7.11 56.52 0.40 -7.28 16 16 H -0.27 -6.53 6.55 56.52 0.37 -6.16 16 17 C -0.10 -1.92 3.34 -89.66 -0.30 -2.22 16 18 C -0.12 -2.25 6.74 -25.92 -0.17 -2.43 16 19 C -0.15 -2.49 8.07 -25.92 -0.21 -2.70 16 20 C -0.13 -2.50 7.42 -25.78 -0.19 -2.69 16 21 C 0.53 11.87 6.90 -10.86 -0.07 11.79 16 22 O -0.51 -13.66 16.99 5.56 0.09 -13.56 16 23 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.16 6.36 -51.93 -0.33 0.83 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.06 1.00 6.81 -51.93 -0.35 0.65 16 32 H 0.09 1.92 6.41 -51.93 -0.33 1.59 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.11 2.54 6.47 -51.93 -0.34 2.20 16 LS Contribution 288.69 15.07 4.35 4.35 Total: -1.00 -32.69 288.69 -6.84 -39.53 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.73 Total: 0.87 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -1.11 Total: -9.36 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.17 Total: -39.28 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.61 Total: 17.46 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.69 -6.84 -39.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.046 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds