Wall clock time and date at job start Mon Mar 30 2020 03:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46769 * 124.35298 * 2 1 4 4 C 1.54481 * 105.47571 * 162.98506 * 3 2 1 5 5 C 1.54634 * 101.76196 * 25.41505 * 4 3 2 6 6 H 1.08999 * 110.48605 * 216.39056 * 5 4 3 7 7 C 1.52999 * 110.48375 * 93.88178 * 5 4 3 8 8 H 1.08997 * 109.47541 * 305.27800 * 7 5 4 9 9 C 1.50700 * 109.46930 * 185.27626 * 7 5 4 10 10 H 1.07998 * 120.00119 * 303.38282 * 9 7 5 11 11 C 1.37878 * 119.99988 * 123.39140 * 9 7 5 12 12 N 1.31519 * 120.00098 * 171.48812 * 11 9 7 13 13 Si 1.86806 * 119.99950 * 351.47810 * 11 9 7 14 14 H 1.48495 * 109.46661 * 90.14555 * 13 11 9 15 15 H 1.48497 * 109.47025 * 210.14338 * 13 11 9 16 16 H 1.48496 * 109.46854 * 330.14774 * 13 11 9 17 17 C 1.53001 * 109.47424 * 65.27579 * 7 5 4 18 18 C 1.53792 * 113.61237 * 65.91479 * 17 7 5 19 19 C 1.53777 * 87.07861 * 139.98318 * 18 17 7 20 20 C 1.53777 * 87.17754 * 334.52540 * 19 18 17 21 21 C 1.34424 * 124.34966 * 180.02562 * 2 1 3 22 22 O 1.21282 * 124.93787 * 0.43902 * 21 2 1 23 23 H 1.08995 * 109.47106 * 89.99786 * 1 2 3 24 24 H 1.08996 * 109.47233 * 210.00262 * 1 2 3 25 25 H 1.09003 * 109.46591 * 329.99850 * 1 2 3 26 26 H 1.08996 * 110.24343 * 43.98338 * 3 2 1 27 27 H 1.09001 * 110.31502 * 282.02353 * 3 2 1 28 28 H 1.08998 * 110.96906 * 267.30398 * 4 3 2 29 29 H 1.08994 * 111.00388 * 143.54419 * 4 3 2 30 30 H 0.96997 * 119.99461 * 179.97438 * 12 11 9 31 31 H 1.08998 * 112.85119 * 294.72359 * 17 7 5 32 32 H 1.08997 * 113.60888 * 25.43571 * 18 17 7 33 33 H 1.08992 * 113.68951 * 254.54134 * 18 17 7 34 34 H 1.09001 * 113.61573 * 89.11550 * 19 18 17 35 35 H 1.09004 * 113.61601 * 219.93609 * 19 18 17 36 36 H 1.09001 * 113.61677 * 140.01934 * 20 19 18 37 37 H 1.08995 * 113.61940 * 270.92882 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7011 0.7487 0.4357 5 6 3.6897 -0.7379 0.0100 6 1 4.2346 -1.3457 0.7324 7 6 4.2928 -0.8995 -1.3868 8 1 3.7681 -0.2491 -2.0866 9 6 4.1530 -2.3326 -1.8315 10 1 4.5642 -3.1280 -1.2276 11 6 3.5003 -2.6284 -3.0094 12 7 3.5220 -3.8551 -3.4832 13 14 2.5848 -1.2868 -3.9322 14 1 3.5045 -0.6349 -4.8988 15 1 1.4388 -1.8832 -4.6644 16 1 2.0834 -0.2758 -2.9670 17 6 5.7743 -0.5192 -1.3499 18 6 6.6335 -1.4703 -0.5000 19 6 7.7096 -1.3469 -1.5916 20 6 6.5703 -1.0182 -2.5708 21 6 2.2234 -1.1098 -0.0005 22 8 1.7945 -2.2442 -0.0086 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3633 -0.8899 0.5139 25 1 -0.3632 0.8900 0.5139 26 1 1.8985 1.9383 0.7102 27 1 2.3309 1.6443 -0.9998 28 1 3.8269 0.8446 1.5141 29 1 4.4759 1.3007 -0.0962 30 1 3.0625 -4.0631 -4.3117 31 1 5.9352 0.5347 -1.1231 32 1 6.2158 -2.4730 -0.4100 33 1 6.9344 -1.0494 0.4593 34 1 8.4006 -0.5192 -1.4320 35 1 8.2175 -2.2859 -1.8121 36 1 6.8197 -0.2311 -3.2824 37 1 6.1354 -1.8975 -3.0458 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260527211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:43 Heat of formation + Delta-G solvation = -37.740959 kcal Electronic energy + Delta-G solvation = -18174.348335 eV Core-core repulsion = 15530.227895 eV Total energy + Delta-G solvation = -2644.120439 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.48784 -39.50101 -37.19463 -35.11425 -33.91563 -30.98711 -27.92302 -27.37567 -26.11815 -25.98954 -23.21758 -21.77074 -20.23239 -19.86861 -18.65873 -17.39957 -17.01853 -16.60467 -16.06480 -16.01380 -15.30312 -14.68503 -14.67870 -14.32849 -14.16028 -13.88836 -13.39095 -13.28379 -13.14525 -13.07341 -12.76719 -12.57241 -12.20023 -12.08337 -11.80738 -11.44181 -11.33728 -11.09379 -10.81529 -10.53993 -10.40940 -10.24333 -9.54935 -8.20006 -6.13846 1.23431 1.29205 1.34441 1.86262 2.30053 2.35518 3.18674 3.71224 3.78818 3.99158 4.15680 4.18916 4.24243 4.33154 4.38680 4.49743 4.54297 4.71517 4.80567 4.81527 4.88014 4.94209 5.01863 5.14508 5.17976 5.22309 5.32661 5.40560 5.43798 5.47467 5.69749 5.75709 5.83488 6.09474 6.29833 6.46101 6.88924 7.45914 7.47686 8.99092 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.013306 C = 0.009822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.075587 B = 2103.739384 C = 2849.926060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.639 5.639 3 C 0.101 3.899 4 C -0.122 4.122 5 C -0.109 4.109 6 H 0.082 0.918 7 C 0.036 3.964 8 H 0.034 0.966 9 C -0.461 4.461 10 H 0.027 0.973 11 C 0.014 3.986 12 N -0.957 5.957 13 Si 0.919 3.081 14 H -0.260 1.260 15 H -0.308 1.308 16 H -0.246 1.246 17 C -0.094 4.094 18 C -0.126 4.126 19 C -0.130 4.130 20 C -0.141 4.141 21 C 0.512 3.488 22 O -0.576 6.576 23 H 0.040 0.960 24 H 0.054 0.946 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.256 0.744 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.563 17.100 7.557 18.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.375 5.375 3 C -0.021 4.021 4 C -0.160 4.160 5 C -0.131 4.131 6 H 0.100 0.900 7 C 0.017 3.983 8 H 0.052 0.948 9 C -0.499 4.499 10 H 0.045 0.955 11 C -0.181 4.181 12 N -0.599 5.599 13 Si 0.745 3.255 14 H -0.185 1.185 15 H -0.235 1.235 16 H -0.170 1.170 17 C -0.113 4.113 18 C -0.163 4.163 19 C -0.168 4.168 20 C -0.178 4.178 21 C 0.301 3.699 22 O -0.455 6.455 23 H 0.059 0.941 24 H 0.073 0.927 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.118 0.882 29 H 0.129 0.871 30 H 0.064 0.936 31 H 0.127 0.873 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.120 0.880 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.183 16.422 7.417 18.058 hybrid contribution -0.957 -0.778 -0.994 1.585 sum 0.226 15.644 6.423 16.912 Atomic orbital electron populations 1.21593 0.78119 1.03785 1.01338 1.48436 1.06988 1.08020 1.74007 1.22317 0.90818 0.86360 1.02579 1.22812 0.96849 0.93031 1.03287 1.22061 0.91604 0.98481 1.00985 0.89993 1.19013 0.93922 0.94383 0.91030 0.94754 1.20927 1.32559 0.92206 1.04188 0.95522 1.25739 0.97217 0.96665 0.98486 1.70071 1.46053 1.21693 1.22057 0.86143 0.79030 0.80903 0.79404 1.18485 1.23542 1.16972 1.22688 0.93446 0.98667 0.96467 1.22707 0.96826 0.99435 0.97320 1.22757 0.95996 1.01215 0.96801 1.22932 0.97395 1.00774 0.96727 1.21491 0.90879 0.83910 0.73601 1.90634 1.79638 1.23864 1.51338 0.94122 0.92717 0.86967 0.86852 0.91561 0.88159 0.87054 0.93551 0.87329 0.93371 0.90399 0.88030 0.93400 0.91949 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.62 10.96 127.77 1.40 4.02 16 2 N -0.64 -21.55 3.33 -842.90 -2.81 -24.36 16 3 C 0.10 2.36 7.35 86.83 0.64 2.99 16 4 C -0.12 -2.90 6.55 31.65 0.21 -2.69 16 5 C -0.11 -4.14 2.37 -10.80 -0.03 -4.16 16 6 H 0.08 3.25 7.61 -2.39 -0.02 3.23 16 7 C 0.04 1.54 1.49 -11.54 -0.02 1.52 16 8 H 0.03 1.50 4.63 -2.39 -0.01 1.49 16 9 C -0.46 -26.11 5.31 25.60 0.14 -25.97 16 10 H 0.03 1.74 6.90 -2.91 -0.02 1.72 16 11 C 0.01 0.85 5.27 84.65 0.45 1.29 16 12 N -0.96 -63.55 13.96 21.45 0.30 -63.25 16 13 Si 0.92 46.55 27.14 68.60 1.86 48.41 16 14 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 15 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 16 H -0.25 -11.43 6.55 99.48 0.65 -10.78 16 17 C -0.09 -3.29 3.34 -10.17 -0.03 -3.32 16 18 C -0.13 -4.33 6.74 31.12 0.21 -4.12 16 19 C -0.13 -4.12 8.07 31.12 0.25 -3.87 16 20 C -0.14 -5.34 7.42 31.21 0.23 -5.11 16 21 C 0.51 22.72 6.90 87.90 0.61 23.33 16 22 O -0.58 -32.46 16.99 -3.03 -0.05 -32.51 16 23 H 0.04 1.18 8.14 -2.39 -0.02 1.17 16 24 H 0.05 1.70 7.93 -2.39 -0.02 1.68 16 25 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.11 2.14 6.36 -2.39 -0.02 2.12 16 30 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 31 H 0.11 2.86 6.81 -2.39 -0.02 2.85 16 32 H 0.05 2.09 6.41 -2.39 -0.02 2.07 16 33 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 2.72 6.47 -2.39 -0.02 2.70 16 Total: -1.00 -80.30 288.69 4.34 -75.96 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.99 Total: 11.83 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.05 Total: -16.08 kcal Atomic # 7 Polarization: -85.10 SS G_CDS: -2.51 Total: -87.61 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.05 Total: -32.51 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.86 Total: 48.41 kcal Total: -80.30 4.34 -75.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260527211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.222 kcal (2) G-P(sol) polarization free energy of solvation -80.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds