Wall clock time and date at job start Mon Mar 30 2020 03:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21278 * 119.99826 * 2 1 4 4 N 1.34770 * 120.00142 * 179.97438 * 2 1 3 5 5 C 1.47073 * 136.05543 * 359.63480 * 4 2 1 6 6 C 1.53241 * 88.07860 * 207.19909 * 5 4 2 7 7 C 1.53004 * 114.32271 * 220.46476 * 6 5 4 8 8 H 1.09002 * 109.47470 * 33.76558 * 7 6 5 9 9 C 1.53007 * 109.46973 * 153.76027 * 7 6 5 10 10 C 1.50700 * 109.47224 * 184.99984 * 9 7 6 11 11 H 1.08002 * 119.99744 * 0.02562 * 10 9 7 12 12 C 1.37877 * 119.99667 * 179.97438 * 10 9 7 13 13 N 1.31512 * 120.00068 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 119.99429 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47461 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46640 * 120.00540 * 14 12 10 17 17 H 1.48498 * 109.47169 * 239.99949 * 14 12 10 18 18 C 1.52996 * 109.47402 * 273.76165 * 7 6 5 19 19 C 1.52997 * 117.50042 * 128.74832 * 18 7 6 20 20 C 1.52996 * 117.50013 * 60.08705 * 18 7 6 21 21 C 1.47068 * 136.06023 * 179.97438 * 4 2 1 22 22 H 1.09002 * 109.47152 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99928 * 1 2 3 24 24 H 1.09004 * 109.47113 * 299.99909 * 1 2 3 25 25 H 1.08998 * 113.46798 * 321.92775 * 5 4 2 26 26 H 1.08996 * 113.46858 * 92.37332 * 5 4 2 27 27 H 1.09000 * 114.01826 * 87.71879 * 6 5 4 28 28 H 1.09002 * 109.46731 * 305.00485 * 9 7 6 29 29 H 1.08998 * 109.46848 * 65.00134 * 9 7 6 30 30 H 0.97002 * 119.99796 * 179.97438 * 13 12 10 31 31 H 1.09001 * 115.55028 * 274.41612 * 18 7 6 32 32 H 1.09004 * 117.49648 * 0.02562 * 19 18 7 33 33 H 1.09004 * 117.49887 * 145.01798 * 19 18 7 34 34 H 1.08996 * 117.50126 * 214.97600 * 20 18 7 35 35 H 1.09000 * 117.49857 * 359.97438 * 20 18 7 36 36 H 1.08996 * 113.47354 * 267.63212 * 21 4 2 37 37 H 1.09009 * 113.46191 * 38.01538 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.8265 -2.5945 0.0077 6 6 3.1648 -2.8703 0.7013 7 6 3.8875 -4.1228 0.2013 8 1 3.6919 -4.2547 -0.8629 9 6 5.3927 -3.9677 0.4276 10 6 6.1153 -5.1450 -0.1748 11 1 5.5568 -5.9256 -0.6700 12 6 7.4894 -5.2250 -0.0947 13 7 8.1694 -4.2742 0.5079 14 14 8.3851 -6.6840 -0.8421 15 1 7.3989 -7.6077 -1.4580 16 1 9.3303 -6.2045 -1.8822 17 1 9.1381 -7.3992 0.2193 18 6 3.3797 -5.3452 0.9685 19 6 2.9164 -6.5513 0.1490 20 6 1.8887 -5.6734 0.8675 21 6 3.5942 -1.5740 0.0002 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 0.9615 -2.8239 0.6298 26 1 1.7566 -3.0294 -0.9893 27 1 3.1242 -2.7987 1.7882 28 1 5.7384 -3.0484 -0.0452 29 1 5.5967 -3.9249 1.4975 30 1 9.1361 -4.3307 0.5646 31 1 3.8753 -5.5430 1.9189 32 1 2.9738 -6.4740 -0.9368 33 1 3.1069 -7.5426 0.5605 34 1 1.4036 -6.0875 1.7513 35 1 1.2695 -5.0182 0.2548 36 1 3.9996 -1.7344 -0.9987 37 1 4.2294 -0.9365 0.6154 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260599132.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:35 Heat of formation + Delta-G solvation = -10.072231 kcal Electronic energy + Delta-G solvation = -16992.175789 eV Core-core repulsion = 14349.255156 eV Total energy + Delta-G solvation = -2642.920633 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.55917 -39.45173 -37.82608 -35.18948 -33.14965 -31.45699 -29.30646 -26.96866 -26.76275 -23.68418 -23.01084 -22.22541 -20.58403 -19.80957 -18.41541 -17.89225 -16.91463 -16.74294 -16.49119 -15.91311 -15.73026 -14.94484 -14.47731 -14.01302 -13.80108 -13.56919 -13.35784 -13.34507 -13.19261 -12.96121 -12.69129 -12.55011 -12.29194 -12.09257 -11.92040 -11.53232 -11.35129 -11.14786 -10.93894 -10.58664 -10.44948 -10.31986 -9.73504 -8.11667 -6.18744 1.40926 1.42743 1.54094 1.57784 1.91284 2.45628 3.19263 3.25228 3.41434 3.64191 3.91689 4.09118 4.26585 4.34007 4.36041 4.40624 4.54530 4.56987 4.63377 4.65925 4.72483 4.78833 4.92425 4.99638 5.02339 5.08745 5.22693 5.31214 5.40443 5.49459 5.55168 5.68827 5.86746 5.96493 6.36854 6.79809 6.99468 7.09390 7.49491 9.00425 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.027778 B = 0.006244 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.757235 B = 4483.200097 C = 5285.870141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.522 3.478 3 O -0.614 6.614 4 N -0.648 5.648 5 C 0.118 3.882 6 C -0.103 4.103 7 C -0.024 4.024 8 H 0.065 0.935 9 C 0.033 3.967 10 C -0.513 4.513 11 H 0.066 0.934 12 C -0.004 4.004 13 N -0.939 5.939 14 Si 0.952 3.048 15 H -0.258 1.258 16 H -0.285 1.285 17 H -0.285 1.285 18 C -0.138 4.138 19 C -0.184 4.184 20 C -0.160 4.160 21 C 0.095 3.905 22 H 0.103 0.897 23 H 0.106 0.894 24 H 0.105 0.895 25 H 0.114 0.886 26 H 0.102 0.898 27 H 0.098 0.902 28 H -0.009 1.009 29 H -0.013 1.013 30 H 0.258 0.742 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.319 -1.294 -0.788 18.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.315 3.685 3 O -0.497 6.497 4 N -0.382 5.382 5 C -0.003 4.003 6 C -0.122 4.122 7 C -0.043 4.043 8 H 0.084 0.916 9 C -0.004 4.004 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.200 4.200 13 N -0.581 5.581 14 Si 0.778 3.222 15 H -0.182 1.182 16 H -0.212 1.212 17 H -0.211 1.211 18 C -0.157 4.157 19 C -0.222 4.222 20 C -0.196 4.196 21 C -0.028 4.028 22 H 0.122 0.878 23 H 0.124 0.876 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.010 0.990 29 H 0.005 0.995 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.098 0.902 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.998 -0.501 -0.758 18.021 hybrid contribution 1.678 -0.388 -0.205 1.734 sum -16.320 -0.889 -0.963 16.373 Atomic orbital electron populations 1.21817 0.86798 1.06362 1.06138 1.21486 0.92182 0.80654 0.74134 1.90684 1.72424 1.32594 1.53981 1.50007 1.09510 1.06916 1.71789 1.23292 0.98484 0.76625 1.01946 1.22818 0.96095 0.92973 1.00276 1.20526 0.94494 0.91242 0.98001 0.91644 1.19018 0.91491 0.95172 0.94704 1.21698 0.91667 1.07136 1.34665 0.91555 1.25880 0.99127 0.98712 0.96307 1.70114 1.07116 1.35209 1.45640 0.85585 0.78695 0.79878 0.78040 1.18205 1.21165 1.21078 1.21953 0.97056 0.96563 1.00113 1.22931 1.04996 0.95358 0.98870 1.23122 0.90943 1.02692 1.02869 1.23060 0.84253 0.94740 1.00728 0.87837 0.87577 0.87652 0.86809 0.88028 0.88362 0.99036 0.99509 0.93310 0.90475 0.89347 0.89618 0.87994 0.86970 0.90241 0.93244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 10.36 71.24 0.74 -1.68 16 2 C 0.52 15.21 8.19 87.66 0.72 15.93 16 3 O -0.61 -24.61 17.88 -3.02 -0.05 -24.67 16 4 N -0.65 -18.14 3.69 -858.73 -3.17 -21.31 16 5 C 0.12 2.41 5.84 83.09 0.49 2.89 16 6 C -0.10 -2.97 3.27 -10.54 -0.03 -3.01 16 7 C -0.02 -0.82 1.79 -10.79 -0.02 -0.84 16 8 H 0.07 2.24 7.66 -2.39 -0.02 2.23 16 9 C 0.03 1.62 4.32 29.85 0.13 1.75 16 10 C -0.51 -27.46 8.61 25.60 0.22 -27.24 16 11 H 0.07 3.38 7.33 -2.91 -0.02 3.35 16 12 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 13 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 14 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 15 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 C -0.14 -4.34 4.51 -10.80 -0.05 -4.39 16 19 C -0.18 -5.10 9.90 30.62 0.30 -4.80 16 20 C -0.16 -3.41 9.75 30.62 0.30 -3.12 16 21 C 0.10 3.20 7.18 83.19 0.60 3.80 16 22 H 0.10 1.05 7.32 -2.39 -0.02 1.03 16 23 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 25 H 0.11 1.53 7.78 -2.39 -0.02 1.51 16 26 H 0.10 1.81 7.94 -2.39 -0.02 1.80 16 27 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 28 H -0.01 -0.47 7.31 -2.39 -0.02 -0.49 16 29 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 30 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.08 2.77 8.11 -2.39 -0.02 2.75 16 32 H 0.09 2.45 8.05 -2.38 -0.02 2.43 16 33 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 34 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.11 1.85 6.41 -2.39 -0.02 1.83 16 36 H 0.08 2.77 8.10 -2.39 -0.02 2.75 16 37 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -72.02 306.19 3.96 -68.06 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.03 Total: 9.24 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 3.85 Total: -20.44 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -2.89 Total: -78.03 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -72.02 3.96 -68.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260599132.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.984 kcal (2) G-P(sol) polarization free energy of solvation -72.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds