Wall clock time and date at job start Mon Mar 30 2020 03:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.45746 * 117.94263 * 2 1 4 4 C 1.52904 * 110.49632 * 160.94034 * 3 2 1 5 5 C 1.53352 * 108.68512 * 50.72350 * 4 3 2 6 6 H 1.08995 * 109.67418 * 52.21999 * 5 4 3 7 7 C 1.52998 * 109.70223 * 172.73238 * 5 4 3 8 8 H 1.09003 * 109.47504 * 60.95961 * 7 5 4 9 9 C 1.50700 * 109.46853 * 180.95447 * 7 5 4 10 10 H 1.07998 * 120.00462 * 23.99536 * 9 7 5 11 11 C 1.37879 * 120.00114 * 203.99561 * 9 7 5 12 12 N 1.31515 * 120.00367 * 150.00461 * 11 9 7 13 13 Si 1.86805 * 119.99976 * 330.00153 * 11 9 7 14 14 H 1.48504 * 109.46934 * 54.10501 * 13 11 9 15 15 H 1.48499 * 109.47342 * 174.10275 * 13 11 9 16 16 H 1.48502 * 109.47381 * 294.10789 * 13 11 9 17 17 C 1.52997 * 109.47285 * 300.95447 * 7 5 4 18 18 C 1.53004 * 117.49878 * 138.87480 * 17 7 5 19 19 C 1.52994 * 117.49905 * 70.25337 * 17 7 5 20 20 C 1.53066 * 108.42130 * 292.48429 * 5 4 3 21 21 C 1.33353 * 117.94919 * 179.97438 * 2 1 3 22 22 O 1.21279 * 118.24459 * 2.24332 * 21 2 1 23 23 H 1.09003 * 109.46755 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47063 * 300.01744 * 1 2 3 25 25 H 1.08997 * 109.46931 * 60.02501 * 1 2 3 26 26 H 1.09006 * 109.30671 * 281.23808 * 3 2 1 27 27 H 1.08995 * 109.30382 * 40.82399 * 3 2 1 28 28 H 1.09003 * 109.58713 * 290.97414 * 4 3 2 29 29 H 1.09001 * 109.61258 * 170.49154 * 4 3 2 30 30 H 0.97001 * 119.99834 * 180.02562 * 12 11 9 31 31 H 1.08998 * 115.54804 * 284.57928 * 17 7 5 32 32 H 1.08995 * 117.49783 * 359.97438 * 18 17 7 33 33 H 1.09003 * 117.49879 * 145.02128 * 18 17 7 34 34 H 1.09007 * 117.50159 * 214.97821 * 19 17 7 35 35 H 1.09004 * 117.50366 * 359.97438 * 19 17 7 36 36 H 1.09002 * 109.39591 * 169.02953 * 20 5 4 37 37 H 1.09000 * 109.40333 * 288.84968 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5948 1.1262 0.4677 5 6 4.2493 -0.0014 -0.3397 6 1 4.1088 0.1809 -1.4051 7 6 5.7443 -0.0636 -0.0207 8 1 5.8811 -0.2719 1.0404 9 6 6.3864 -1.1576 -0.8342 10 1 5.9296 -1.4835 -1.7569 11 6 7.5572 -1.7426 -0.4005 12 7 7.8166 -2.9964 -0.7011 13 14 8.7751 -0.7544 0.6142 14 1 8.0821 -0.1750 1.7930 15 1 9.8732 -1.6427 1.0728 16 1 9.3381 0.3404 -0.2163 17 6 6.3956 1.2773 -0.3652 18 6 7.4377 1.8280 0.6104 19 6 6.0549 2.4767 0.5215 20 6 3.5839 -1.3239 0.0490 21 6 2.0901 -1.1780 0.0005 22 8 1.4160 -2.1854 -0.0408 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5141 0.8898 25 1 -0.3633 0.5134 -0.8902 26 1 2.1398 1.6999 -1.0090 27 1 1.6292 1.9706 0.6725 28 1 3.6101 0.8732 1.5279 29 1 4.1383 2.0566 0.3035 30 1 8.6401 -3.4080 -0.3957 31 1 6.5516 1.4650 -1.4275 32 1 7.6589 1.2352 1.4979 33 1 8.2796 2.3780 0.1900 34 1 5.9871 3.4536 0.0426 35 1 5.3664 2.3106 1.3501 36 1 3.8944 -2.1035 -0.6466 37 1 3.8870 -1.5985 1.0594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260603964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:19 Heat of formation + Delta-G solvation = 0.032951 kcal Electronic energy + Delta-G solvation = -17741.456738 eV Core-core repulsion = 15098.974299 eV Total energy + Delta-G solvation = -2642.482440 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13938 -37.86469 -35.71065 -33.91058 -32.47887 -29.74361 -28.50168 -26.29714 -24.30197 -22.80012 -21.90889 -20.99485 -19.17141 -18.19122 -16.91389 -16.11379 -15.87883 -15.52292 -14.77627 -14.55646 -13.91253 -13.74709 -13.23683 -12.79268 -12.61790 -12.46533 -12.27412 -12.03385 -11.55150 -11.40834 -11.28177 -10.93058 -10.51269 -10.40393 -10.18457 -9.92429 -9.68053 -9.47334 -9.34711 -9.02463 -8.70656 -8.46924 -8.14612 -6.19579 -4.03451 3.09189 3.25979 3.35496 3.41898 3.43290 4.41354 4.52441 4.99742 5.05783 5.11573 5.18591 5.44605 5.48427 5.52273 5.58014 5.72688 5.74235 5.76866 5.87977 5.97985 6.06749 6.10610 6.26000 6.33092 6.42964 6.57309 6.62439 6.67313 6.80369 6.83067 6.94700 7.12609 7.40805 7.76997 7.78804 8.45886 8.57327 8.96227 9.53165 10.91503 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.008801 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.383701 B = 3180.727776 C = 3982.901599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.612 5.612 3 C 0.117 3.883 4 C -0.155 4.155 5 C -0.063 4.063 6 H 0.068 0.932 7 C 0.055 3.945 8 H 0.034 0.966 9 C -0.530 4.530 10 H 0.072 0.928 11 C 0.086 3.914 12 N -0.871 5.871 13 Si 0.867 3.133 14 H -0.262 1.262 15 H -0.305 1.305 16 H -0.270 1.270 17 C -0.118 4.118 18 C -0.221 4.221 19 C -0.209 4.209 20 C -0.114 4.114 21 C 0.517 3.483 22 O -0.568 6.568 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.264 0.736 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.325 11.217 2.970 14.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.346 5.346 3 C -0.006 4.006 4 C -0.192 4.192 5 C -0.082 4.082 6 H 0.086 0.914 7 C 0.036 3.964 8 H 0.052 0.948 9 C -0.566 4.566 10 H 0.090 0.910 11 C -0.119 4.119 12 N -0.505 5.505 13 Si 0.697 3.303 14 H -0.188 1.188 15 H -0.233 1.233 16 H -0.196 1.196 17 C -0.137 4.137 18 C -0.258 4.258 19 C -0.245 4.245 20 C -0.153 4.153 21 C 0.308 3.692 22 O -0.447 6.447 23 H 0.107 0.893 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.130 0.870 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.521 10.515 2.940 13.850 hybrid contribution 0.947 0.711 0.474 1.275 sum -7.574 11.226 3.414 13.966 Atomic orbital electron populations 1.21680 0.80850 1.04255 1.00546 1.47297 1.06853 1.06640 1.73831 1.21428 0.94125 0.84009 1.01003 1.22607 0.93461 1.02715 1.00413 1.21065 0.96546 0.91476 0.99098 0.91377 1.18740 0.89859 0.90593 0.97238 0.94818 1.20691 1.09004 1.17154 1.09775 0.90975 1.24940 0.98425 0.93567 0.95001 1.70172 1.24849 1.10070 1.45452 0.87501 0.81387 0.80057 0.81313 1.18838 1.23272 1.19598 1.23016 1.00170 0.94681 0.95794 1.23587 0.92642 1.05406 1.04141 1.23160 0.98915 0.97794 1.04656 1.21618 0.87463 1.01091 1.05176 1.20837 0.92023 0.82158 0.74198 1.90628 1.66819 1.36072 1.51219 0.89324 0.92833 0.92781 0.92116 0.91629 0.91807 0.87725 0.92632 0.88619 0.87858 0.90081 0.90203 0.88710 0.87028 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 10.48 59.85 0.63 1.50 16 2 N -0.61 -9.21 3.21 -182.87 -0.59 -9.79 16 3 C 0.12 1.45 6.40 -4.50 -0.03 1.42 16 4 C -0.15 -2.17 4.13 -26.60 -0.11 -2.28 16 5 C -0.06 -1.13 1.82 -90.40 -0.16 -1.29 16 6 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 7 C 0.05 1.15 1.21 -91.77 -0.11 1.04 16 8 H 0.03 0.74 7.25 -51.93 -0.38 0.37 16 9 C -0.53 -13.70 7.84 -34.44 -0.27 -13.97 16 10 H 0.07 2.03 8.05 -52.49 -0.42 1.61 16 11 C 0.09 2.34 5.44 -17.82 -0.10 2.25 16 12 N -0.87 -25.53 13.96 55.43 0.77 -24.76 16 13 Si 0.87 20.67 23.64 -169.99 -4.02 16.65 16 14 H -0.26 -5.85 5.09 56.52 0.29 -5.56 16 15 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 16 H -0.27 -6.32 6.70 56.52 0.38 -5.94 16 17 C -0.12 -2.24 4.28 -90.62 -0.39 -2.62 16 18 C -0.22 -4.08 6.99 -26.73 -0.19 -4.27 16 19 C -0.21 -3.20 7.84 -26.74 -0.21 -3.41 16 20 C -0.11 -2.20 4.92 -28.11 -0.14 -2.34 16 21 C 0.52 9.65 7.47 -11.88 -0.09 9.56 16 22 O -0.57 -12.36 15.95 5.56 0.09 -12.27 16 23 H 0.09 1.27 6.59 -51.93 -0.34 0.93 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 28 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 29 H 0.10 1.36 4.20 -51.93 -0.22 1.14 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 32 H 0.10 2.04 4.66 -51.93 -0.24 1.80 16 33 H 0.08 1.43 8.09 -51.93 -0.42 1.01 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.35 6.23 -51.93 -0.32 1.03 16 36 H 0.11 2.43 7.69 -51.93 -0.40 2.03 16 37 H 0.09 1.81 8.10 -51.93 -0.42 1.39 16 LS Contribution 278.71 15.07 4.20 4.20 Total: -1.00 -29.98 278.71 -6.52 -36.51 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.82 Total: 3.89 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.17 Total: -14.41 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.19 Total: -34.55 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.02 Total: 16.65 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.98 -6.52 -36.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260603964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.539 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds