Wall clock time and date at job start Mon Mar 30 2020 03:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.45746 * 117.94263 * 2 1 4 4 C 1.52904 * 110.49632 * 160.94034 * 3 2 1 5 5 C 1.53352 * 108.68512 * 50.72350 * 4 3 2 6 6 H 1.08995 * 109.67418 * 52.21999 * 5 4 3 7 7 C 1.52998 * 109.70223 * 172.73238 * 5 4 3 8 8 H 1.09003 * 109.47504 * 60.95961 * 7 5 4 9 9 C 1.50700 * 109.46853 * 180.95447 * 7 5 4 10 10 H 1.07998 * 120.00462 * 23.99536 * 9 7 5 11 11 C 1.37879 * 120.00114 * 203.99561 * 9 7 5 12 12 N 1.31515 * 120.00367 * 150.00461 * 11 9 7 13 13 Si 1.86805 * 119.99976 * 330.00153 * 11 9 7 14 14 H 1.48504 * 109.46934 * 54.10501 * 13 11 9 15 15 H 1.48499 * 109.47342 * 174.10275 * 13 11 9 16 16 H 1.48502 * 109.47381 * 294.10789 * 13 11 9 17 17 C 1.52997 * 109.47285 * 300.95447 * 7 5 4 18 18 C 1.53004 * 117.49878 * 138.87480 * 17 7 5 19 19 C 1.52994 * 117.49905 * 70.25337 * 17 7 5 20 20 C 1.53066 * 108.42130 * 292.48429 * 5 4 3 21 21 C 1.33353 * 117.94919 * 179.97438 * 2 1 3 22 22 O 1.21279 * 118.24459 * 2.24332 * 21 2 1 23 23 H 1.09003 * 109.46755 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47063 * 300.01744 * 1 2 3 25 25 H 1.08997 * 109.46931 * 60.02501 * 1 2 3 26 26 H 1.09006 * 109.30671 * 281.23808 * 3 2 1 27 27 H 1.08995 * 109.30382 * 40.82399 * 3 2 1 28 28 H 1.09003 * 109.58713 * 290.97414 * 4 3 2 29 29 H 1.09001 * 109.61258 * 170.49154 * 4 3 2 30 30 H 0.97001 * 119.99834 * 180.02562 * 12 11 9 31 31 H 1.08998 * 115.54804 * 284.57928 * 17 7 5 32 32 H 1.08995 * 117.49783 * 359.97438 * 18 17 7 33 33 H 1.09003 * 117.49879 * 145.02128 * 18 17 7 34 34 H 1.09007 * 117.50159 * 214.97821 * 19 17 7 35 35 H 1.09004 * 117.50366 * 359.97438 * 19 17 7 36 36 H 1.09002 * 109.39591 * 169.02953 * 20 5 4 37 37 H 1.09000 * 109.40333 * 288.84968 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1480 1.2875 0.0000 4 6 3.5948 1.1262 0.4677 5 6 4.2493 -0.0014 -0.3397 6 1 4.1088 0.1809 -1.4051 7 6 5.7443 -0.0636 -0.0207 8 1 5.8811 -0.2719 1.0404 9 6 6.3864 -1.1576 -0.8342 10 1 5.9296 -1.4835 -1.7569 11 6 7.5572 -1.7426 -0.4005 12 7 7.8166 -2.9964 -0.7011 13 14 8.7751 -0.7544 0.6142 14 1 8.0821 -0.1750 1.7930 15 1 9.8732 -1.6427 1.0728 16 1 9.3381 0.3404 -0.2163 17 6 6.3956 1.2773 -0.3652 18 6 7.4377 1.8280 0.6104 19 6 6.0549 2.4767 0.5215 20 6 3.5839 -1.3239 0.0490 21 6 2.0901 -1.1780 0.0005 22 8 1.4160 -2.1854 -0.0408 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5141 0.8898 25 1 -0.3633 0.5134 -0.8902 26 1 2.1398 1.6999 -1.0090 27 1 1.6292 1.9706 0.6725 28 1 3.6101 0.8732 1.5279 29 1 4.1383 2.0566 0.3035 30 1 8.6401 -3.4080 -0.3957 31 1 6.5516 1.4650 -1.4275 32 1 7.6589 1.2352 1.4979 33 1 8.2796 2.3780 0.1900 34 1 5.9871 3.4536 0.0426 35 1 5.3664 2.3106 1.3501 36 1 3.8944 -2.1035 -0.6466 37 1 3.8870 -1.5985 1.0594 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260603964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:19 Heat of formation + Delta-G solvation = -19.873156 kcal Electronic energy + Delta-G solvation = -17742.319932 eV Core-core repulsion = 15098.974299 eV Total energy + Delta-G solvation = -2643.345633 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.52418 -39.34382 -37.07120 -35.36880 -34.40951 -31.14992 -30.06761 -27.61145 -25.74748 -24.35320 -23.25620 -22.37724 -20.74895 -19.60264 -18.78659 -17.45485 -17.22038 -16.85579 -16.50099 -15.92835 -15.54841 -15.13775 -14.82237 -14.22606 -14.08805 -13.87280 -13.62828 -13.28938 -12.99363 -12.95462 -12.74929 -12.32449 -12.21283 -11.91956 -11.80176 -11.38203 -11.33608 -11.20483 -10.88630 -10.68288 -10.18690 -10.09240 -9.65499 -8.31559 -6.16802 1.34431 1.46043 1.51695 1.61534 2.15373 2.40852 2.98289 3.15257 3.69716 3.94334 4.02061 4.04837 4.24061 4.30151 4.41547 4.50338 4.54446 4.63367 4.72924 4.74635 4.80209 4.87515 4.98562 5.02659 5.11043 5.16564 5.26325 5.31535 5.39777 5.46378 5.55515 5.59527 5.76338 5.79735 6.40037 6.46834 6.84623 7.16807 7.40987 8.83409 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028700 B = 0.008801 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.383701 B = 3180.727776 C = 3982.901599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.604 5.604 3 C 0.113 3.887 4 C -0.145 4.145 5 C -0.057 4.057 6 H 0.059 0.941 7 C 0.058 3.942 8 H 0.025 0.975 9 C -0.525 4.525 10 H 0.028 0.972 11 C 0.024 3.976 12 N -0.928 5.928 13 Si 0.929 3.071 14 H -0.233 1.233 15 H -0.318 1.318 16 H -0.259 1.259 17 C -0.143 4.143 18 C -0.239 4.239 19 C -0.162 4.162 20 C -0.112 4.112 21 C 0.515 3.485 22 O -0.610 6.610 23 H 0.062 0.938 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.262 0.738 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.581 15.776 4.487 18.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.336 5.336 3 C -0.008 4.008 4 C -0.182 4.182 5 C -0.076 4.076 6 H 0.078 0.922 7 C 0.039 3.961 8 H 0.043 0.957 9 C -0.562 4.562 10 H 0.046 0.954 11 C -0.176 4.176 12 N -0.566 5.566 13 Si 0.756 3.244 14 H -0.158 1.158 15 H -0.247 1.247 16 H -0.184 1.184 17 C -0.162 4.162 18 C -0.275 4.275 19 C -0.198 4.198 20 C -0.152 4.152 21 C 0.305 3.695 22 O -0.494 6.494 23 H 0.081 0.919 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.802 15.157 4.463 18.594 hybrid contribution 1.249 -0.724 -0.083 1.446 sum -8.552 14.434 4.380 17.340 Atomic orbital electron populations 1.21890 0.78818 1.03543 1.03338 1.47387 1.08270 1.06336 1.71607 1.21718 0.92959 0.82982 1.03176 1.22542 0.94608 1.01247 0.99800 1.20966 0.94842 0.92347 0.99463 0.92245 1.18604 0.91602 0.90514 0.95355 0.95707 1.21029 1.08454 1.18233 1.08470 0.95351 1.25800 1.00424 0.94220 0.97128 1.70313 1.25518 1.12108 1.48694 0.86544 0.78540 0.78328 0.80938 1.15767 1.24740 1.18406 1.22638 1.02301 0.95158 0.96082 1.23611 0.94524 1.06230 1.03140 1.23292 0.96420 0.97151 1.02985 1.21460 0.89111 1.01053 1.03545 1.20536 0.91249 0.83117 0.74603 1.90607 1.67301 1.37856 1.53591 0.91877 0.89620 0.90226 0.90394 0.87313 0.91253 0.85633 0.92933 0.89400 0.89163 0.89230 0.86828 0.86778 0.91384 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.43 10.48 127.77 1.34 2.77 16 2 N -0.60 -16.48 3.21 -851.67 -2.73 -19.21 16 3 C 0.11 2.20 6.40 86.49 0.55 2.76 16 4 C -0.15 -3.45 4.13 30.68 0.13 -3.32 16 5 C -0.06 -2.01 1.82 -10.65 -0.02 -2.03 16 6 H 0.06 2.18 8.13 -2.39 -0.02 2.16 16 7 C 0.06 2.43 1.21 -11.54 -0.01 2.41 16 8 H 0.02 1.07 7.25 -2.39 -0.02 1.06 16 9 C -0.52 -28.48 7.84 25.60 0.20 -28.28 16 10 H 0.03 1.73 8.05 -2.91 -0.02 1.71 16 11 C 0.02 1.36 5.44 84.65 0.46 1.82 16 12 N -0.93 -57.78 13.96 21.45 0.30 -57.48 16 13 Si 0.93 43.34 23.64 68.60 1.62 44.97 16 14 H -0.23 -9.73 5.09 99.48 0.51 -9.22 16 15 H -0.32 -15.46 7.11 99.48 0.71 -14.76 16 16 H -0.26 -11.52 6.70 99.48 0.67 -10.85 16 17 C -0.14 -5.05 4.28 -10.80 -0.05 -5.10 16 18 C -0.24 -7.86 6.99 30.59 0.21 -7.64 16 19 C -0.16 -4.05 7.84 30.59 0.24 -3.81 16 20 C -0.11 -4.50 4.92 29.70 0.15 -4.35 16 21 C 0.51 19.30 7.47 87.71 0.66 19.96 16 22 O -0.61 -27.46 15.95 -3.02 -0.05 -27.51 16 23 H 0.06 1.73 6.59 -2.39 -0.02 1.71 16 24 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.11 1.36 8.10 -2.39 -0.02 1.34 16 28 H 0.07 1.63 8.12 -2.39 -0.02 1.61 16 29 H 0.13 2.48 4.20 -2.39 -0.01 2.47 16 30 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.09 3.22 4.66 -2.39 -0.01 3.21 16 33 H 0.09 2.80 8.09 -2.39 -0.02 2.78 16 34 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 35 H 0.11 2.47 6.23 -2.38 -0.01 2.46 16 36 H 0.07 3.27 7.69 -2.39 -0.02 3.25 16 37 H 0.09 3.51 8.10 -2.39 -0.02 3.50 16 Total: -1.00 -71.36 278.71 3.80 -67.56 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.80 Total: 16.49 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 3.86 Total: -24.82 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -2.43 Total: -76.69 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.62 Total: 44.97 kcal Total: -71.36 3.80 -67.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260603964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.688 kcal (2) G-P(sol) polarization free energy of solvation -71.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds