Wall clock time and date at job start Mon Mar 30 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34413 * 124.34915 * 2 1 4 4 O 1.21284 * 124.93963 * 359.62894 * 3 2 1 5 5 C 1.51278 * 110.11668 * 179.58771 * 3 2 1 6 6 C 1.54624 * 104.19603 * 343.74874 * 5 3 2 7 7 C 1.46826 * 124.33264 * 179.97438 * 2 1 3 8 8 H 1.08989 * 110.23753 * 78.02087 * 7 2 1 9 9 C 1.52998 * 110.28326 * 315.99815 * 7 2 1 10 10 H 1.09001 * 109.47083 * 190.15526 * 9 7 2 11 11 C 1.50696 * 109.47481 * 310.15854 * 9 7 2 12 12 H 1.08003 * 120.00313 * 54.07306 * 11 9 7 13 13 C 1.37875 * 120.00032 * 234.07810 * 11 9 7 14 14 N 1.31527 * 120.00067 * 182.85331 * 13 11 9 15 15 Si 1.86800 * 120.00000 * 2.85151 * 13 11 9 16 16 H 1.48507 * 109.46925 * 91.88957 * 15 13 11 17 17 H 1.48496 * 109.46918 * 211.88669 * 15 13 11 18 18 H 1.48492 * 109.47108 * 331.89073 * 15 13 11 19 19 C 1.53003 * 109.47062 * 70.15572 * 9 7 2 20 20 C 1.53780 * 113.61503 * 161.24858 * 19 9 7 21 21 C 1.53778 * 87.08145 * 220.02055 * 20 19 9 22 22 C 1.53779 * 87.08021 * 25.43456 * 21 20 19 23 23 H 1.08994 * 109.46893 * 5.75316 * 1 2 3 24 24 H 1.09003 * 109.46847 * 125.75121 * 1 2 3 25 25 H 1.08996 * 109.47065 * 245.74825 * 1 2 3 26 26 H 1.09000 * 110.48908 * 225.07191 * 5 3 2 27 27 H 1.08993 * 110.48838 * 102.42785 * 5 3 2 28 28 H 1.09002 * 110.97244 * 142.91494 * 6 5 3 29 29 H 1.09004 * 110.97124 * 266.64251 * 6 5 3 30 30 H 0.96995 * 119.99573 * 180.02562 * 14 13 11 31 31 H 1.09000 * 112.84977 * 292.55895 * 19 9 7 32 32 H 1.08998 * 113.61685 * 334.57344 * 20 19 9 33 33 H 1.09000 * 113.61048 * 105.47207 * 20 19 9 34 34 H 1.09004 * 113.61658 * 270.88221 * 21 20 19 35 35 H 1.08999 * 113.61130 * 139.98215 * 21 20 19 36 36 H 1.09005 * 113.61415 * 220.01947 * 22 21 20 37 37 H 1.09001 * 113.68996 * 89.13102 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7945 2.2442 -0.0064 5 6 3.6898 0.7378 0.0102 6 6 3.7010 -0.7486 0.4358 7 6 2.2931 -1.2125 0.0005 8 1 2.3305 -1.6439 -0.9996 9 6 1.7398 -2.2322 0.9979 10 1 2.4558 -3.0447 1.1218 11 6 1.5076 -1.5604 2.3267 12 1 0.8994 -0.6696 2.3825 13 6 2.0717 -2.0827 3.4712 14 7 1.8236 -1.5294 4.6383 15 14 3.1884 -3.5764 3.3643 16 1 4.5978 -3.1314 3.2191 17 1 3.0502 -4.3872 4.6007 18 1 2.8050 -4.3978 2.1882 19 6 0.4171 -2.7937 0.4724 20 6 0.0055 -4.1203 1.1323 21 6 -0.4565 -4.5792 -0.2608 22 6 0.5608 -3.5820 -0.8401 23 1 -0.3633 1.0224 -0.1030 24 1 -0.3633 -0.6005 -0.8340 25 1 -0.3633 -0.4221 0.9369 26 1 4.2326 1.3459 0.7339 27 1 4.1195 0.8530 -0.9848 28 1 4.4754 -1.3010 -0.0964 29 1 3.8274 -0.8447 1.5142 30 1 2.2207 -1.8967 5.4434 31 1 -0.3794 -2.0499 0.4501 32 1 0.8464 -4.6926 1.5240 33 1 -0.8083 -4.0168 1.8501 34 1 -1.4928 -4.3246 -0.4830 35 1 -0.2194 -5.6207 -0.4782 36 1 0.1953 -3.0440 -1.7148 37 1 1.5539 -4.0060 -0.9885 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260626799.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:46 Heat of formation + Delta-G solvation = -13.696749 kcal Electronic energy + Delta-G solvation = -18208.582367 eV Core-core repulsion = 15565.504563 eV Total energy + Delta-G solvation = -2643.077804 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.00962 -38.17143 -35.82093 -32.78314 -32.14186 -30.36506 -26.22385 -25.83058 -24.90863 -24.34381 -21.52265 -20.04336 -18.97517 -18.47917 -17.19328 -15.71482 -15.68818 -14.89493 -14.66032 -14.36223 -13.83921 -13.20876 -13.03405 -12.69532 -12.39051 -12.13065 -11.93005 -11.89070 -11.72953 -11.65488 -11.35376 -10.98186 -10.85074 -10.43277 -10.14842 -10.06338 -9.61214 -9.41463 -9.38333 -9.10158 -8.80627 -8.54642 -7.81330 -6.11042 -4.10110 3.19347 3.26052 3.28911 3.31487 3.86968 4.33989 4.99443 5.08129 5.22477 5.28377 5.34965 5.36297 5.51005 5.69026 5.74897 5.89931 5.99429 6.06007 6.13177 6.17998 6.21153 6.29468 6.32402 6.40906 6.44205 6.51870 6.68176 6.70272 6.83156 6.98140 7.08485 7.21293 7.37653 7.70486 7.93584 8.48718 8.91322 8.97498 9.50651 11.01977 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.013121 C = 0.009570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.724638 B = 2133.542227 C = 2925.253998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.585 5.585 3 C 0.518 3.482 4 O -0.562 6.562 5 C -0.150 4.150 6 C -0.128 4.128 7 C 0.141 3.859 8 H 0.056 0.944 9 C 0.007 3.993 10 H 0.054 0.946 11 C -0.495 4.495 12 H 0.078 0.922 13 C 0.074 3.926 14 N -0.898 5.898 15 Si 0.864 3.136 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.258 1.258 19 C -0.101 4.101 20 C -0.128 4.128 21 C -0.146 4.146 22 C -0.147 4.147 23 H 0.065 0.935 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.263 0.737 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -4.476 -9.980 10.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.316 5.316 3 C 0.306 3.694 4 O -0.443 6.443 5 C -0.191 4.191 6 C -0.165 4.165 7 C 0.037 3.963 8 H 0.074 0.926 9 C -0.013 4.013 10 H 0.071 0.929 11 C -0.533 4.533 12 H 0.096 0.904 13 C -0.128 4.128 14 N -0.536 5.536 15 Si 0.692 3.308 16 H -0.203 1.203 17 H -0.217 1.217 18 H -0.183 1.183 19 C -0.120 4.120 20 C -0.165 4.165 21 C -0.184 4.184 22 C -0.184 4.184 23 H 0.084 0.916 24 H 0.071 0.929 25 H 0.098 0.902 26 H 0.111 0.889 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.610 -3.923 -9.770 10.546 hybrid contribution 0.603 -0.963 0.209 1.155 sum 1.212 -4.885 -9.562 10.806 Atomic orbital electron populations 1.21737 0.79356 1.01725 1.02082 1.47866 1.05986 1.07034 1.70764 1.20776 0.89378 0.84275 0.75021 1.90629 1.79043 1.21566 1.53042 1.22238 0.95026 0.98738 1.03063 1.22675 0.96132 0.93559 1.04162 1.21915 0.89610 0.86450 0.98298 0.92610 1.19638 0.92933 0.93914 0.94790 0.92854 1.20869 1.31600 1.12111 0.88735 0.90387 1.25087 0.96071 0.96231 0.95402 1.69903 1.44298 1.41220 0.98156 0.87115 0.81704 0.84391 0.77589 1.20333 1.21701 1.18306 1.23000 1.00554 0.95574 0.92846 1.22813 1.00622 0.97933 0.95152 1.22835 0.98724 0.98265 0.98527 1.23035 0.98737 0.98546 0.98093 0.91613 0.92911 0.90211 0.88854 0.89202 0.90986 0.88386 0.92731 0.89144 0.90852 0.92137 0.91045 0.92744 0.92829 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.66 8.66 59.85 0.52 2.17 16 2 N -0.59 -11.27 2.50 -172.66 -0.43 -11.70 16 3 C 0.52 10.58 8.02 -10.86 -0.09 10.49 16 4 O -0.56 -13.27 17.36 5.55 0.10 -13.17 16 5 C -0.15 -2.49 6.86 -26.75 -0.18 -2.68 16 6 C -0.13 -2.18 6.54 -25.10 -0.16 -2.34 16 7 C 0.14 2.53 3.03 -66.97 -0.20 2.33 16 8 H 0.06 0.90 7.38 -51.94 -0.38 0.51 16 9 C 0.01 0.13 1.19 -91.77 -0.11 0.02 16 10 H 0.05 1.10 4.28 -51.93 -0.22 0.88 16 11 C -0.50 -12.25 6.85 -34.44 -0.24 -12.49 16 12 H 0.08 2.19 6.26 -52.48 -0.33 1.86 16 13 C 0.07 1.94 5.47 -17.81 -0.10 1.85 16 14 N -0.90 -26.08 13.96 55.43 0.77 -25.31 16 15 Si 0.86 19.67 27.15 -169.99 -4.62 15.06 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.26 -5.44 5.07 56.52 0.29 -5.16 16 19 C -0.10 -1.81 2.33 -89.81 -0.21 -2.02 16 20 C -0.13 -2.26 7.58 -25.92 -0.20 -2.45 16 21 C -0.15 -2.12 8.08 -25.92 -0.21 -2.33 16 22 C -0.15 -2.20 6.74 -25.92 -0.17 -2.37 16 23 H 0.07 1.18 7.55 -51.93 -0.39 0.79 16 24 H 0.05 0.80 7.50 -51.93 -0.39 0.41 16 25 H 0.08 1.55 4.99 -51.93 -0.26 1.29 16 26 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 1.96 7.13 -51.93 -0.37 1.59 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.09 1.63 4.44 -51.93 -0.23 1.40 16 32 H 0.07 1.38 6.64 -51.93 -0.34 1.04 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 281.18 15.07 4.24 4.24 Total: -1.00 -29.65 281.18 -6.84 -36.50 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -5.55 Total: 4.20 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.35 Total: -9.81 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.34 Total: -37.01 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.10 Total: -13.17 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -4.62 Total: 15.06 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.65 -6.84 -36.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260626799.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.799 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds