Wall clock time and date at job start Mon Mar 30 2020 03:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34413 * 124.34915 * 2 1 4 4 O 1.21284 * 124.93963 * 359.62894 * 3 2 1 5 5 C 1.51278 * 110.11668 * 179.58771 * 3 2 1 6 6 C 1.54624 * 104.19603 * 343.74874 * 5 3 2 7 7 C 1.46826 * 124.33264 * 179.97438 * 2 1 3 8 8 H 1.08989 * 110.23753 * 78.02087 * 7 2 1 9 9 C 1.52998 * 110.28326 * 315.99815 * 7 2 1 10 10 H 1.09001 * 109.47083 * 190.15526 * 9 7 2 11 11 C 1.50696 * 109.47481 * 310.15854 * 9 7 2 12 12 H 1.08003 * 120.00313 * 54.07306 * 11 9 7 13 13 C 1.37875 * 120.00032 * 234.07810 * 11 9 7 14 14 N 1.31527 * 120.00067 * 182.85331 * 13 11 9 15 15 Si 1.86800 * 120.00000 * 2.85151 * 13 11 9 16 16 H 1.48507 * 109.46925 * 91.88957 * 15 13 11 17 17 H 1.48496 * 109.46918 * 211.88669 * 15 13 11 18 18 H 1.48492 * 109.47108 * 331.89073 * 15 13 11 19 19 C 1.53003 * 109.47062 * 70.15572 * 9 7 2 20 20 C 1.53780 * 113.61503 * 161.24858 * 19 9 7 21 21 C 1.53778 * 87.08145 * 220.02055 * 20 19 9 22 22 C 1.53779 * 87.08021 * 25.43456 * 21 20 19 23 23 H 1.08994 * 109.46893 * 5.75316 * 1 2 3 24 24 H 1.09003 * 109.46847 * 125.75121 * 1 2 3 25 25 H 1.08996 * 109.47065 * 245.74825 * 1 2 3 26 26 H 1.09000 * 110.48908 * 225.07191 * 5 3 2 27 27 H 1.08993 * 110.48838 * 102.42785 * 5 3 2 28 28 H 1.09002 * 110.97244 * 142.91494 * 6 5 3 29 29 H 1.09004 * 110.97124 * 266.64251 * 6 5 3 30 30 H 0.96995 * 119.99573 * 180.02562 * 14 13 11 31 31 H 1.09000 * 112.84977 * 292.55895 * 19 9 7 32 32 H 1.08998 * 113.61685 * 334.57344 * 20 19 9 33 33 H 1.09000 * 113.61048 * 105.47207 * 20 19 9 34 34 H 1.09004 * 113.61658 * 270.88221 * 21 20 19 35 35 H 1.08999 * 113.61130 * 139.98215 * 21 20 19 36 36 H 1.09005 * 113.61415 * 220.01947 * 22 21 20 37 37 H 1.09001 * 113.68996 * 89.13102 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7945 2.2442 -0.0064 5 6 3.6898 0.7378 0.0102 6 6 3.7010 -0.7486 0.4358 7 6 2.2931 -1.2125 0.0005 8 1 2.3305 -1.6439 -0.9996 9 6 1.7398 -2.2322 0.9979 10 1 2.4558 -3.0447 1.1218 11 6 1.5076 -1.5604 2.3267 12 1 0.8994 -0.6696 2.3825 13 6 2.0717 -2.0827 3.4712 14 7 1.8236 -1.5294 4.6383 15 14 3.1884 -3.5764 3.3643 16 1 4.5978 -3.1314 3.2191 17 1 3.0502 -4.3872 4.6007 18 1 2.8050 -4.3978 2.1882 19 6 0.4171 -2.7937 0.4724 20 6 0.0055 -4.1203 1.1323 21 6 -0.4565 -4.5792 -0.2608 22 6 0.5608 -3.5820 -0.8401 23 1 -0.3633 1.0224 -0.1030 24 1 -0.3633 -0.6005 -0.8340 25 1 -0.3633 -0.4221 0.9369 26 1 4.2326 1.3459 0.7339 27 1 4.1195 0.8530 -0.9848 28 1 4.4754 -1.3010 -0.0964 29 1 3.8274 -0.8447 1.5142 30 1 2.2207 -1.8967 5.4434 31 1 -0.3794 -2.0499 0.4501 32 1 0.8464 -4.6926 1.5240 33 1 -0.8083 -4.0168 1.8501 34 1 -1.4928 -4.3246 -0.4830 35 1 -0.2194 -5.6207 -0.4782 36 1 0.1953 -3.0440 -1.7148 37 1 1.5539 -4.0060 -0.9885 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260626799.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:46 Heat of formation + Delta-G solvation = -31.850387 kcal Electronic energy + Delta-G solvation = -18209.369568 eV Core-core repulsion = 15565.504563 eV Total energy + Delta-G solvation = -2643.865005 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.51400 -39.58220 -37.38486 -34.70574 -33.56141 -32.06220 -27.69798 -27.39631 -26.25783 -25.89215 -22.91248 -21.63432 -20.41186 -19.96827 -18.97215 -17.29557 -17.24791 -16.46134 -16.12914 -15.75805 -15.49779 -14.77007 -14.57186 -14.40490 -13.99011 -13.62337 -13.41329 -13.26469 -13.11494 -13.02262 -12.88201 -12.60193 -12.24336 -11.84163 -11.72729 -11.53941 -11.34288 -11.04941 -10.80561 -10.66486 -10.45484 -10.38041 -9.35586 -8.15773 -6.16656 1.38419 1.39840 1.48844 1.71575 2.40813 2.42268 3.19351 3.57782 3.85866 3.98236 4.05702 4.08898 4.21269 4.36196 4.36781 4.51558 4.59773 4.76678 4.79347 4.84512 4.92002 4.99408 5.02235 5.05564 5.14627 5.19756 5.26921 5.29392 5.39138 5.61956 5.62443 5.75271 5.83191 5.93192 6.36034 6.52659 6.92907 7.34305 7.47515 9.01572 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.013121 C = 0.009570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.724638 B = 2133.542227 C = 2925.253998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.589 5.589 3 C 0.499 3.501 4 O -0.606 6.606 5 C -0.141 4.141 6 C -0.127 4.127 7 C 0.139 3.861 8 H 0.096 0.904 9 C 0.007 3.993 10 H 0.057 0.943 11 C -0.473 4.473 12 H 0.031 0.969 13 C 0.011 3.989 14 N -0.961 5.961 15 Si 0.922 3.078 16 H -0.267 1.267 17 H -0.306 1.306 18 H -0.225 1.225 19 C -0.113 4.113 20 C -0.142 4.142 21 C -0.130 4.130 22 C -0.131 4.131 23 H 0.056 0.944 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.092 0.908 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.061 0.939 30 H 0.258 0.742 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.106 -6.633 -13.354 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.319 5.319 3 C 0.288 3.712 4 O -0.490 6.490 5 C -0.180 4.180 6 C -0.165 4.165 7 C 0.036 3.964 8 H 0.113 0.887 9 C -0.012 4.012 10 H 0.075 0.925 11 C -0.511 4.511 12 H 0.049 0.951 13 C -0.184 4.184 14 N -0.602 5.602 15 Si 0.748 3.252 16 H -0.192 1.192 17 H -0.234 1.234 18 H -0.148 1.148 19 C -0.131 4.131 20 C -0.180 4.180 21 C -0.168 4.168 22 C -0.169 4.169 23 H 0.075 0.925 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.148 0.852 28 H 0.135 0.865 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.824 -6.115 -13.188 14.651 hybrid contribution 0.117 -0.223 1.281 1.306 sum 1.941 -6.338 -11.907 13.628 Atomic orbital electron populations 1.21723 0.79163 1.01646 1.02136 1.48098 1.06516 1.07466 1.69854 1.21573 0.91348 0.83884 0.74385 1.90596 1.80132 1.23187 1.55045 1.22270 0.92188 0.98238 1.05327 1.22713 0.96878 0.94365 1.02495 1.22062 0.89621 0.85254 0.99475 0.88671 1.19619 0.94528 0.94204 0.92826 0.92530 1.21041 1.28847 1.10041 0.91146 0.95123 1.25889 0.98108 0.99527 0.94899 1.70094 1.47090 1.43890 0.99162 0.86166 0.80077 0.80959 0.78001 1.19250 1.23374 1.14809 1.22968 0.98903 0.95664 0.95581 1.22882 0.99957 0.98268 0.96894 1.22770 0.99403 0.99333 0.95261 1.22959 0.99620 0.97585 0.96686 0.92510 0.89502 0.92645 0.88977 0.85193 0.86530 0.92000 0.93331 0.89827 0.91933 0.93921 0.89832 0.90917 0.90784 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.37 8.66 127.77 1.11 4.47 16 2 N -0.59 -21.98 2.50 -818.76 -2.04 -24.03 16 3 C 0.50 20.04 8.02 87.90 0.71 20.75 16 4 O -0.61 -28.97 17.36 -3.04 -0.05 -29.02 16 5 C -0.14 -4.30 6.86 30.58 0.21 -4.09 16 6 C -0.13 -3.92 6.54 31.65 0.21 -3.71 16 7 C 0.14 4.55 3.03 45.43 0.14 4.68 16 8 H 0.10 2.49 7.38 -2.39 -0.02 2.47 16 9 C 0.01 0.29 1.19 -11.54 -0.01 0.27 16 10 H 0.06 2.14 4.28 -2.39 -0.01 2.13 16 11 C -0.47 -23.89 6.85 25.60 0.18 -23.72 16 12 H 0.03 1.82 6.26 -2.91 -0.02 1.80 16 13 C 0.01 0.60 5.47 84.65 0.46 1.06 16 14 N -0.96 -58.76 13.96 21.45 0.30 -58.46 16 15 Si 0.92 40.48 27.15 68.60 1.86 42.34 16 16 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 17 H -0.31 -14.17 7.11 99.48 0.71 -13.46 16 18 H -0.22 -8.56 5.07 99.48 0.50 -8.05 16 19 C -0.11 -3.75 2.33 -10.27 -0.02 -3.78 16 20 C -0.14 -4.75 7.58 31.12 0.24 -4.52 16 21 C -0.13 -3.23 8.08 31.12 0.25 -2.98 16 22 C -0.13 -3.26 6.74 31.12 0.21 -3.05 16 23 H 0.06 2.08 7.55 -2.39 -0.02 2.06 16 24 H 0.09 2.44 7.50 -2.39 -0.02 2.42 16 25 H 0.06 2.23 4.99 -2.39 -0.01 2.22 16 26 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 27 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 28 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.06 2.39 7.13 -2.38 -0.02 2.37 16 30 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.08 2.91 4.44 -2.39 -0.01 2.90 16 32 H 0.06 2.20 6.64 -2.39 -0.02 2.19 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.08 1.93 8.10 -2.39 -0.02 1.91 16 Total: -1.00 -68.76 281.18 4.58 -64.18 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.85 Total: 19.59 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 3.66 Total: -14.60 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -1.75 Total: -82.49 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.05 Total: -29.02 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 1.86 Total: 42.34 kcal Total: -68.76 4.58 -64.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260626799.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.326 kcal (2) G-P(sol) polarization free energy of solvation -68.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds