Wall clock time and date at job start Mon Mar 30 2020 03:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34620 * 124.46616 * 2 1 4 4 O 1.21278 * 124.91209 * 359.56040 * 3 2 1 5 5 C 1.51279 * 110.14708 * 179.53595 * 3 2 1 6 6 C 1.54631 * 104.19882 * 343.76715 * 5 3 2 7 7 C 1.46757 * 124.34867 * 179.97438 * 2 1 3 8 8 H 1.09002 * 110.25161 * 316.12380 * 7 2 1 9 9 C 1.53000 * 110.24577 * 78.03454 * 7 2 1 10 10 H 1.09000 * 109.46945 * 62.94330 * 9 7 2 11 11 C 1.50699 * 109.47643 * 182.94551 * 9 7 2 12 12 H 1.07999 * 119.99787 * 7.99978 * 11 9 7 13 13 C 1.37878 * 120.00395 * 187.99766 * 11 9 7 14 14 N 1.31512 * 119.99595 * 44.00020 * 13 11 9 15 15 Si 1.86793 * 120.00039 * 224.00225 * 13 11 9 16 16 H 1.48500 * 109.47573 * 59.99742 * 15 13 11 17 17 H 1.48503 * 109.47394 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47184 * 299.99488 * 15 13 11 19 19 C 1.53000 * 109.47080 * 302.94670 * 9 7 2 20 20 C 1.53784 * 113.61685 * 86.10724 * 19 9 7 21 21 C 1.54051 * 86.98783 * 140.01889 * 20 19 9 22 22 C 1.53782 * 87.07777 * 334.57171 * 21 20 19 23 23 H 1.09000 * 109.47135 * 274.30372 * 1 2 3 24 24 H 1.08997 * 109.46755 * 34.29617 * 1 2 3 25 25 H 1.08991 * 109.47072 * 154.30643 * 1 2 3 26 26 H 1.09000 * 110.49234 * 225.09391 * 5 3 2 27 27 H 1.08998 * 110.49055 * 102.44371 * 5 3 2 28 28 H 1.09000 * 110.96991 * 266.68089 * 6 5 3 29 29 H 1.09006 * 111.00668 * 142.92789 * 6 5 3 30 30 H 0.97003 * 119.99975 * 179.97438 * 14 13 11 31 31 H 1.09006 * 112.84936 * 314.91287 * 19 9 7 32 32 H 1.08998 * 113.61426 * 254.61946 * 20 19 9 33 33 H 1.09004 * 113.61274 * 25.51610 * 20 19 9 34 34 H 1.08996 * 113.62344 * 220.02300 * 21 20 19 35 35 H 1.09001 * 113.68499 * 89.12601 * 21 20 19 36 36 H 1.09002 * 113.61376 * 270.88317 * 22 21 20 37 37 H 1.08996 * 113.61907 * 139.97320 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2269 1.1099 0.0000 4 8 1.7998 2.2449 -0.0076 5 6 3.6927 0.7358 0.0115 6 6 3.7014 -0.7507 0.4374 7 6 2.2931 -1.2117 0.0005 8 1 1.8974 -1.9388 0.7097 9 6 2.3461 -1.8173 -1.4035 10 1 2.8228 -1.1130 -2.0852 11 6 3.1397 -3.0979 -1.3686 12 1 3.4536 -3.5131 -0.4223 13 6 3.4651 -3.7397 -2.5448 14 7 3.9058 -3.0465 -3.5718 15 14 3.2799 -5.5935 -2.6794 16 1 1.8616 -5.9676 -2.4471 17 1 3.6930 -6.0352 -4.0357 18 1 4.1384 -6.2520 -1.6621 19 6 0.9243 -2.1114 -1.8860 20 6 0.2400 -0.9084 -2.5564 21 6 -0.3336 -1.9078 -3.5788 22 6 0.8704 -2.8083 -3.2559 23 1 -0.3633 0.0771 1.0248 24 1 -0.3633 0.8490 -0.5791 25 1 -0.3633 -0.9260 -0.4455 26 1 4.2358 1.3431 0.7355 27 1 4.1234 0.8500 -0.9832 28 1 3.8261 -0.8467 1.5160 29 1 4.4754 -1.3048 -0.0936 30 1 4.1351 -3.4980 -4.3992 31 1 0.3108 -2.5949 -1.1257 32 1 -0.5188 -0.4348 -1.9335 33 1 0.9397 -0.1937 -2.9897 34 1 -0.3362 -1.5327 -4.6021 35 1 -1.2911 -2.3363 -3.2825 36 1 1.7422 -2.6121 -3.8801 37 1 0.6203 -3.8676 -3.1972 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260626805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:49 Heat of formation + Delta-G solvation = -2.148132 kcal Electronic energy + Delta-G solvation = -18257.152592 eV Core-core repulsion = 15614.575574 eV Total energy + Delta-G solvation = -2642.577019 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.10538 -37.96914 -35.79599 -33.21187 -32.09990 -29.98207 -26.54239 -25.68573 -24.69954 -24.04265 -21.63519 -20.21457 -18.74462 -18.43253 -16.57210 -16.02284 -15.64646 -14.77275 -14.66910 -14.43459 -13.84564 -13.13270 -13.06215 -12.68049 -12.36235 -12.14901 -11.81862 -11.67904 -11.57675 -11.11785 -11.03966 -10.84169 -10.68891 -10.62752 -10.28514 -9.95684 -9.85099 -9.46344 -9.18653 -9.06236 -8.94611 -7.98497 -7.85140 -6.38380 -3.98229 3.16545 3.25845 3.35681 3.42403 3.69484 4.39729 4.90326 5.02218 5.22355 5.47130 5.56209 5.61759 5.64135 5.72018 5.80129 5.83668 5.98027 6.09017 6.16542 6.28017 6.32189 6.42497 6.44812 6.53662 6.66106 6.76066 6.89778 7.01553 7.09998 7.14018 7.28007 7.53517 7.73845 7.78959 7.83638 8.33347 8.77194 8.93047 9.48367 10.72441 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.010350 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.432951 B = 2704.697053 C = 3313.879200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.607 5.607 3 C 0.514 3.486 4 O -0.561 6.561 5 C -0.152 4.152 6 C -0.119 4.119 7 C 0.139 3.861 8 H 0.072 0.928 9 C 0.051 3.949 10 H 0.043 0.957 11 C -0.560 4.560 12 H 0.062 0.938 13 C 0.115 3.885 14 N -0.834 5.834 15 Si 0.835 3.165 16 H -0.273 1.273 17 H -0.290 1.290 18 H -0.277 1.277 19 C -0.089 4.089 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.126 4.126 23 H 0.040 0.960 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.107 0.893 30 H 0.263 0.737 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.852 1.811 3.971 5.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.339 5.339 3 C 0.302 3.698 4 O -0.441 6.441 5 C -0.192 4.192 6 C -0.157 4.157 7 C 0.037 3.963 8 H 0.090 0.910 9 C 0.032 3.968 10 H 0.061 0.939 11 C -0.595 4.595 12 H 0.080 0.920 13 C -0.093 4.093 14 N -0.466 5.466 15 Si 0.660 3.340 16 H -0.199 1.199 17 H -0.216 1.216 18 H -0.202 1.202 19 C -0.108 4.108 20 C -0.188 4.188 21 C -0.192 4.192 22 C -0.164 4.164 23 H 0.058 0.942 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.087 2.411 3.773 6.062 hybrid contribution -0.288 -1.321 -0.280 1.381 sum -4.375 1.090 3.493 5.703 Atomic orbital electron populations 1.21946 0.79660 1.03425 1.00344 1.48341 1.05896 1.08021 1.71656 1.21040 0.89725 0.84160 0.74850 1.90628 1.79323 1.21561 1.52604 1.22276 0.94177 0.98448 1.04261 1.22583 0.98585 0.94060 1.00499 1.22013 0.88969 0.84632 1.00723 0.90990 1.19077 0.91608 0.96142 0.90017 0.93926 1.20508 1.38650 1.07695 0.92640 0.91960 1.24654 0.91812 0.97004 0.95825 1.70414 1.33771 1.37403 1.05020 0.87582 0.79426 0.89845 0.77164 1.19861 1.21615 1.20250 1.22673 0.98284 0.94314 0.95482 1.23526 0.99805 0.97126 0.98388 1.22969 0.98267 0.99544 0.98468 1.23002 0.97669 0.96811 0.98890 0.94167 0.91629 0.89160 0.89356 0.87974 0.91892 0.87458 0.92679 0.91831 0.91858 0.91149 0.93083 0.91838 0.87741 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 8.43 59.85 0.50 1.89 16 2 N -0.61 -10.86 2.60 -172.65 -0.45 -11.31 16 3 C 0.51 9.87 8.03 -10.77 -0.09 9.78 16 4 O -0.56 -12.37 17.66 5.56 0.10 -12.27 16 5 C -0.15 -2.51 6.86 -26.74 -0.18 -2.69 16 6 C -0.12 -1.99 6.54 -25.09 -0.16 -2.16 16 7 C 0.14 2.55 2.66 -67.01 -0.18 2.37 16 8 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 9 C 0.05 1.10 1.59 -91.77 -0.15 0.95 16 10 H 0.04 1.05 7.73 -51.93 -0.40 0.64 16 11 C -0.56 -13.37 7.17 -34.44 -0.25 -13.62 16 12 H 0.06 1.50 8.00 -52.49 -0.42 1.08 16 13 C 0.11 2.84 3.18 -17.82 -0.06 2.79 16 14 N -0.83 -21.47 12.06 55.43 0.67 -20.80 16 15 Si 0.83 19.14 29.15 -169.99 -4.95 14.18 16 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C -0.09 -1.77 2.10 -89.80 -0.19 -1.96 16 20 C -0.15 -2.76 5.89 -25.77 -0.15 -2.91 16 21 C -0.15 -2.75 8.09 -25.78 -0.21 -2.96 16 22 C -0.13 -2.65 5.79 -25.92 -0.15 -2.80 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 1.04 7.44 -51.93 -0.39 0.66 16 25 H 0.09 1.36 4.19 -51.93 -0.22 1.14 16 26 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 29 H 0.11 1.96 7.17 -51.93 -0.37 1.58 16 30 H 0.26 6.54 8.31 -40.82 -0.34 6.21 16 31 H 0.06 1.23 7.32 -51.93 -0.38 0.85 16 32 H 0.06 1.03 4.56 -51.93 -0.24 0.79 16 33 H 0.07 1.42 7.91 -51.93 -0.41 1.01 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 2.46 5.83 -51.93 -0.30 2.16 16 37 H 0.04 0.95 7.74 -51.93 -0.40 0.55 16 LS Contribution 282.32 15.07 4.25 4.25 Total: -1.00 -26.81 282.32 -7.26 -34.08 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.62 Total: 3.18 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.26 Total: -11.32 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: 0.22 Total: -32.10 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.10 Total: -12.27 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.95 Total: 14.18 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.81 -7.26 -34.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260626805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.928 kcal (2) G-P(sol) polarization free energy of solvation -26.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds