Wall clock time and date at job start Mon Mar 30 2020 03:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34620 * 124.46616 * 2 1 4 4 O 1.21278 * 124.91209 * 359.56040 * 3 2 1 5 5 C 1.51279 * 110.14708 * 179.53595 * 3 2 1 6 6 C 1.54631 * 104.19882 * 343.76715 * 5 3 2 7 7 C 1.46757 * 124.34867 * 179.97438 * 2 1 3 8 8 H 1.09002 * 110.25161 * 316.12380 * 7 2 1 9 9 C 1.53000 * 110.24577 * 78.03454 * 7 2 1 10 10 H 1.09000 * 109.46945 * 62.94330 * 9 7 2 11 11 C 1.50699 * 109.47643 * 182.94551 * 9 7 2 12 12 H 1.07999 * 119.99787 * 7.99978 * 11 9 7 13 13 C 1.37878 * 120.00395 * 187.99766 * 11 9 7 14 14 N 1.31512 * 119.99595 * 44.00020 * 13 11 9 15 15 Si 1.86793 * 120.00039 * 224.00225 * 13 11 9 16 16 H 1.48500 * 109.47573 * 59.99742 * 15 13 11 17 17 H 1.48503 * 109.47394 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47184 * 299.99488 * 15 13 11 19 19 C 1.53000 * 109.47080 * 302.94670 * 9 7 2 20 20 C 1.53784 * 113.61685 * 86.10724 * 19 9 7 21 21 C 1.54051 * 86.98783 * 140.01889 * 20 19 9 22 22 C 1.53782 * 87.07777 * 334.57171 * 21 20 19 23 23 H 1.09000 * 109.47135 * 274.30372 * 1 2 3 24 24 H 1.08997 * 109.46755 * 34.29617 * 1 2 3 25 25 H 1.08991 * 109.47072 * 154.30643 * 1 2 3 26 26 H 1.09000 * 110.49234 * 225.09391 * 5 3 2 27 27 H 1.08998 * 110.49055 * 102.44371 * 5 3 2 28 28 H 1.09000 * 110.96991 * 266.68089 * 6 5 3 29 29 H 1.09006 * 111.00668 * 142.92789 * 6 5 3 30 30 H 0.97003 * 119.99975 * 179.97438 * 14 13 11 31 31 H 1.09006 * 112.84936 * 314.91287 * 19 9 7 32 32 H 1.08998 * 113.61426 * 254.61946 * 20 19 9 33 33 H 1.09004 * 113.61274 * 25.51610 * 20 19 9 34 34 H 1.08996 * 113.62344 * 220.02300 * 21 20 19 35 35 H 1.09001 * 113.68499 * 89.12601 * 21 20 19 36 36 H 1.09002 * 113.61376 * 270.88317 * 22 21 20 37 37 H 1.08996 * 113.61907 * 139.97320 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2269 1.1099 0.0000 4 8 1.7998 2.2449 -0.0076 5 6 3.6927 0.7358 0.0115 6 6 3.7014 -0.7507 0.4374 7 6 2.2931 -1.2117 0.0005 8 1 1.8974 -1.9388 0.7097 9 6 2.3461 -1.8173 -1.4035 10 1 2.8228 -1.1130 -2.0852 11 6 3.1397 -3.0979 -1.3686 12 1 3.4536 -3.5131 -0.4223 13 6 3.4651 -3.7397 -2.5448 14 7 3.9058 -3.0465 -3.5718 15 14 3.2799 -5.5935 -2.6794 16 1 1.8616 -5.9676 -2.4471 17 1 3.6930 -6.0352 -4.0357 18 1 4.1384 -6.2520 -1.6621 19 6 0.9243 -2.1114 -1.8860 20 6 0.2400 -0.9084 -2.5564 21 6 -0.3336 -1.9078 -3.5788 22 6 0.8704 -2.8083 -3.2559 23 1 -0.3633 0.0771 1.0248 24 1 -0.3633 0.8490 -0.5791 25 1 -0.3633 -0.9260 -0.4455 26 1 4.2358 1.3431 0.7355 27 1 4.1234 0.8500 -0.9832 28 1 3.8261 -0.8467 1.5160 29 1 4.4754 -1.3048 -0.0936 30 1 4.1351 -3.4980 -4.3992 31 1 0.3108 -2.5949 -1.1257 32 1 -0.5188 -0.4348 -1.9335 33 1 0.9397 -0.1937 -2.9897 34 1 -0.3362 -1.5327 -4.6021 35 1 -1.2911 -2.3363 -3.2825 36 1 1.7422 -2.6121 -3.8801 37 1 0.6203 -3.8676 -3.1972 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260626805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:48 Heat of formation + Delta-G solvation = -16.240751 kcal Electronic energy + Delta-G solvation = -18257.763694 eV Core-core repulsion = 15614.575574 eV Total energy + Delta-G solvation = -2643.188120 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.59499 -39.54108 -37.33582 -34.98286 -33.54254 -31.65353 -27.91066 -27.25168 -26.33286 -25.66673 -23.13467 -21.78032 -20.20761 -20.01621 -18.36699 -17.53383 -17.13979 -16.42900 -16.19291 -16.07521 -15.41428 -14.67744 -14.44254 -14.26348 -14.04185 -13.59047 -13.40535 -13.22007 -13.03442 -12.70564 -12.65731 -12.53546 -12.37956 -12.08446 -11.93388 -11.57693 -11.49851 -11.09624 -10.70613 -10.69675 -10.50779 -9.85938 -9.35931 -8.29832 -5.90544 1.40439 1.50066 1.54598 1.67015 2.28073 2.52463 2.99784 3.61004 3.83674 3.98896 4.07580 4.14138 4.21466 4.36079 4.41090 4.50551 4.57175 4.79456 4.81152 4.87363 4.91902 4.97769 4.99122 5.11340 5.12312 5.25580 5.37156 5.44849 5.48292 5.63960 5.70546 5.86726 5.89604 6.08277 6.28526 6.51296 7.05979 7.29637 7.56500 8.81744 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.026274 B = 0.010350 C = 0.008447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.432951 B = 2704.697053 C = 3313.879200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.603 5.603 3 C 0.506 3.494 4 O -0.593 6.593 5 C -0.146 4.146 6 C -0.113 4.113 7 C 0.141 3.859 8 H 0.085 0.915 9 C 0.057 3.943 10 H 0.004 0.996 11 C -0.562 4.562 12 H 0.061 0.939 13 C 0.086 3.914 14 N -0.862 5.862 15 Si 0.876 3.124 16 H -0.272 1.272 17 H -0.297 1.297 18 H -0.275 1.275 19 C -0.090 4.090 20 C -0.141 4.141 21 C -0.140 4.140 22 C -0.138 4.138 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.114 0.886 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.261 0.739 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 1.520 5.333 7.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.334 5.334 3 C 0.295 3.705 4 O -0.476 6.476 5 C -0.186 4.186 6 C -0.150 4.150 7 C 0.038 3.962 8 H 0.103 0.897 9 C 0.037 3.963 10 H 0.022 0.978 11 C -0.598 4.598 12 H 0.079 0.921 13 C -0.119 4.119 14 N -0.496 5.496 15 Si 0.701 3.299 16 H -0.197 1.197 17 H -0.223 1.223 18 H -0.201 1.201 19 C -0.109 4.109 20 C -0.178 4.178 21 C -0.177 4.177 22 C -0.176 4.176 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.117 0.883 26 H 0.132 0.868 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.329 2.090 5.143 7.695 hybrid contribution 0.110 -1.247 -0.713 1.441 sum -5.219 0.842 4.430 6.897 Atomic orbital electron populations 1.22110 0.78301 1.03664 1.01842 1.48404 1.06863 1.07398 1.70742 1.21413 0.90794 0.83895 0.74366 1.90607 1.80022 1.22718 1.54264 1.22275 0.92948 0.98798 1.04570 1.22529 0.96939 0.93579 1.02000 1.21905 0.90297 0.84994 0.98973 0.89732 1.18933 0.91883 0.94336 0.91168 0.97798 1.20783 1.38180 1.08558 0.92253 0.92091 1.25054 0.91974 0.99015 0.95902 1.70469 1.35366 1.38344 1.05440 0.86938 0.79224 0.87071 0.76626 1.19708 1.22305 1.20071 1.22661 0.97714 0.95166 0.95318 1.23384 0.99637 0.96251 0.98544 1.22935 0.98034 0.98021 0.98747 1.22937 0.98230 0.96920 0.99473 0.92005 0.91961 0.88303 0.86791 0.88894 0.88991 0.89303 0.92938 0.90351 0.89285 0.93697 0.92639 0.89107 0.90803 0.94530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.34 8.43 127.77 1.08 3.42 16 2 N -0.60 -20.42 2.60 -818.61 -2.13 -22.55 16 3 C 0.51 18.79 8.03 87.87 0.71 19.50 16 4 O -0.59 -25.62 17.66 -3.02 -0.05 -25.68 16 5 C -0.15 -4.65 6.86 30.59 0.21 -4.44 16 6 C -0.11 -3.57 6.54 31.65 0.21 -3.36 16 7 C 0.14 4.93 2.66 45.45 0.12 5.05 16 8 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 9 C 0.06 2.40 1.59 -11.54 -0.02 2.38 16 10 H 0.00 0.19 7.73 -2.39 -0.02 0.17 16 11 C -0.56 -26.68 7.17 25.60 0.18 -26.49 16 12 H 0.06 2.88 8.00 -2.91 -0.02 2.85 16 13 C 0.09 4.28 3.18 84.66 0.27 4.55 16 14 N -0.86 -45.42 12.06 21.45 0.26 -45.17 16 15 Si 0.88 39.23 29.15 68.60 2.00 41.23 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 17 H -0.30 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 19 C -0.09 -3.47 2.10 -10.27 -0.02 -3.49 16 20 C -0.14 -4.92 5.89 31.21 0.18 -4.74 16 21 C -0.14 -4.69 8.09 31.21 0.25 -4.44 16 22 C -0.14 -5.71 5.79 31.12 0.18 -5.53 16 23 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.06 1.84 7.44 -2.39 -0.02 1.82 16 25 H 0.10 2.64 4.19 -2.39 -0.01 2.63 16 26 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 27 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.09 3.18 7.17 -2.38 -0.02 3.17 16 30 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 31 H 0.08 2.81 7.32 -2.38 -0.02 2.79 16 32 H 0.09 2.64 4.56 -2.39 -0.01 2.63 16 33 H 0.04 1.80 7.91 -2.38 -0.02 1.78 16 34 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.07 3.55 5.83 -2.39 -0.01 3.54 16 37 H 0.04 1.53 7.74 -2.39 -0.02 1.51 16 Total: -1.00 -57.24 282.32 4.47 -52.77 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 1.05 Total: 17.00 kcal Atomic # 6 Polarization: -20.96 SS G_CDS: 3.35 Total: -17.61 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -1.87 Total: -67.71 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.00 Total: 41.23 kcal Total: -57.24 4.47 -52.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260626805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.530 kcal (2) G-P(sol) polarization free energy of solvation -57.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds