Wall clock time and date at job start Mon Mar 30 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47161 * 2 1 4 4 C 1.52992 * 109.47258 * 239.99250 * 2 1 3 5 5 C 1.50702 * 109.46802 * 65.00127 * 4 2 1 6 6 H 1.08002 * 120.00112 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00069 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99736 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47263 * 89.99971 * 9 7 5 11 11 H 1.48503 * 109.47308 * 210.00412 * 9 7 5 12 12 H 1.48509 * 109.47178 * 330.00414 * 9 7 5 13 13 C 1.53006 * 109.47051 * 119.99510 * 2 1 3 14 14 H 1.09000 * 110.88586 * 56.19015 * 13 2 1 15 15 C 1.54861 * 111.03855 * 292.29416 * 13 2 1 16 16 C 1.51282 * 104.20513 * 217.09850 * 15 13 2 17 17 O 1.21284 * 124.94166 * 196.28279 * 16 15 13 18 18 N 1.34415 * 110.11730 * 16.26751 * 16 15 13 19 19 C 1.46506 * 124.35027 * 180.42850 * 18 16 15 20 20 C 1.53001 * 117.49901 * 8.59574 * 19 18 16 21 21 C 1.53001 * 60.00120 * 252.51462 * 20 19 18 22 22 C 1.46760 * 111.30303 * 0.40627 * 18 16 15 23 23 H 1.09005 * 109.47159 * 300.00139 * 1 2 3 24 24 H 1.08997 * 109.47202 * 60.00450 * 1 2 3 25 25 H 1.09007 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47439 * 184.99701 * 4 2 1 27 27 H 1.09000 * 109.47399 * 305.00314 * 4 2 1 28 28 H 0.96998 * 120.00046 * 180.02562 * 8 7 5 29 29 H 1.08998 * 110.46775 * 98.42753 * 15 13 2 30 30 H 1.08998 * 110.49332 * 335.78937 * 15 13 2 31 31 H 1.08997 * 115.55398 * 154.30854 * 19 18 16 32 32 H 1.09007 * 117.49786 * 0.02562 * 20 19 18 33 33 H 1.08998 * 117.49888 * 145.02536 * 20 19 18 34 34 H 1.08998 * 117.49511 * 252.51140 * 21 20 19 35 35 H 1.08998 * 117.50147 * 107.48797 * 21 20 19 36 36 H 1.09002 * 110.24740 * 101.98470 * 22 18 16 37 37 H 1.09002 * 110.24616 * 223.89995 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9933 -0.4020 -3.7282 8 7 2.6765 -1.5191 -3.8509 9 14 1.4986 0.5622 -5.2496 10 1 2.5632 1.5426 -5.5823 11 1 1.3122 -0.3720 -6.3889 12 1 0.2267 1.2827 -4.9872 13 6 2.0400 -0.7212 1.2494 14 1 1.6353 -1.7316 1.3072 15 6 1.7084 0.0836 2.5302 16 6 2.9147 -0.1209 3.4199 17 8 2.9450 0.1036 4.6114 18 7 3.9478 -0.5880 2.6980 19 6 5.2671 -0.9040 3.2512 20 6 5.4191 -0.8795 4.7734 21 6 6.0410 0.2312 3.9245 22 6 3.5843 -0.7413 1.2844 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 3.1264 -0.7996 -1.2055 27 1 1.6054 -1.7199 -1.2949 28 1 2.9244 -1.8417 -4.7314 29 1 0.8113 -0.3114 3.0070 30 1 1.5826 1.1405 2.2949 31 1 5.8425 -1.6473 2.6995 32 1 4.5374 -0.6287 5.3633 33 1 6.0946 -1.6070 5.2235 34 1 7.1256 0.2343 3.8162 35 1 5.5686 1.2130 3.9559 36 1 3.9857 0.0865 0.6997 37 1 3.9579 -1.6903 0.8996 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260649165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:15 Heat of formation + Delta-G solvation = -23.447767 kcal Electronic energy + Delta-G solvation = -17043.368791 eV Core-core repulsion = 14399.868151 eV Total energy + Delta-G solvation = -2643.500640 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.52187 -37.11639 -36.51329 -34.23364 -32.29062 -29.73739 -27.46763 -26.73588 -23.60060 -22.88200 -22.40611 -21.53058 -19.15742 -18.88114 -16.83540 -16.34063 -16.12499 -14.94738 -14.74403 -14.45139 -13.91646 -13.55272 -13.16045 -13.11075 -12.82924 -12.52133 -12.27912 -11.70299 -11.51191 -11.30233 -11.14525 -10.94639 -10.88292 -10.81910 -10.46089 -10.38388 -10.19985 -9.82386 -9.49585 -9.11449 -8.96342 -8.39170 -8.35931 -6.03972 -4.05363 2.68511 3.03817 3.29125 3.36265 3.38790 3.88562 4.42295 4.55625 4.76067 4.85857 4.99934 5.03121 5.11345 5.32613 5.36899 5.57918 5.66999 5.81935 5.82556 5.90965 5.97271 5.99662 6.07220 6.24604 6.28361 6.36087 6.51324 6.80333 6.87275 7.01400 7.07025 7.26994 7.60654 7.74805 7.95230 8.33286 8.38575 9.00804 9.58735 11.07285 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037104 B = 0.005446 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.463534 B = 5139.869956 C = 5611.964827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 H 0.061 0.939 4 C 0.025 3.975 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.090 4.090 14 H 0.086 0.914 15 C -0.151 4.151 16 C 0.518 3.482 17 O -0.544 6.544 18 N -0.592 5.592 19 C 0.082 3.918 20 C -0.193 4.193 21 C -0.192 4.192 22 C 0.110 3.890 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.046 0.954 26 H 0.018 0.982 27 H 0.017 0.983 28 H 0.260 0.740 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 0.870 11.524 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.012 4.012 5 C -0.554 4.554 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.109 4.109 14 H 0.104 0.896 15 C -0.190 4.190 16 C 0.307 3.693 17 O -0.423 6.423 18 N -0.323 5.323 19 C -0.022 4.022 20 C -0.230 4.230 21 C -0.231 4.231 22 C -0.012 4.012 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.065 0.935 26 H 0.037 0.963 27 H 0.036 0.964 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.122 0.878 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.885 0.839 12.010 12.381 hybrid contribution -0.064 0.420 -1.111 1.189 sum 2.821 1.260 10.900 11.329 Atomic orbital electron populations 1.21723 0.95806 1.01074 1.00496 1.21251 0.95484 0.98986 0.93758 0.92038 1.19184 0.96266 0.95551 0.90163 1.21233 1.34843 1.08358 0.91013 0.92575 1.24997 0.95272 0.95021 0.99078 1.69951 1.38972 1.21122 1.23483 0.86653 0.78956 0.79835 0.82912 1.20744 1.21307 1.19897 1.22364 0.93391 1.00288 0.94877 0.89594 1.22516 0.96885 1.03326 0.96317 1.21129 0.85513 0.75402 0.87252 1.90551 1.83986 1.53139 1.14589 1.47805 1.10291 1.64074 1.10131 1.21511 0.85172 1.00905 0.94652 1.23731 1.04753 1.01276 0.93253 1.23320 0.99452 0.95249 1.05061 1.22314 0.96205 1.03137 0.79565 0.94784 0.91727 0.93482 0.96329 0.96436 0.93045 0.88460 0.87844 0.85417 0.85181 0.88794 0.88376 0.88855 0.90205 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.86 37.16 0.33 -1.93 16 2 C -0.08 -1.36 1.70 -90.62 -0.15 -1.52 16 3 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 4 C 0.03 0.59 4.31 -27.89 -0.12 0.46 16 5 C -0.52 -13.55 8.41 -34.44 -0.29 -13.84 16 6 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 13 C -0.09 -1.36 2.69 -88.86 -0.24 -1.60 16 14 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.15 -2.10 5.66 -26.62 -0.15 -2.25 16 16 C 0.52 8.21 7.88 -10.86 -0.09 8.13 16 17 O -0.54 -9.86 14.69 5.55 0.08 -9.78 16 18 N -0.59 -8.69 3.27 -164.84 -0.54 -9.23 16 19 C 0.08 1.05 6.88 -67.92 -0.47 0.59 16 20 C -0.19 -2.42 9.77 -26.73 -0.26 -2.68 16 21 C -0.19 -2.32 10.34 -26.73 -0.28 -2.60 16 22 C 0.11 1.63 5.75 -3.12 -0.02 1.61 16 23 H 0.03 0.48 7.56 -51.93 -0.39 0.09 16 24 H 0.06 1.20 6.95 -51.93 -0.36 0.84 16 25 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.02 0.45 7.01 -51.93 -0.36 0.08 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.10 1.38 7.85 -51.93 -0.41 0.98 16 31 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.13 1.98 5.30 -51.93 -0.28 1.71 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 1.25 7.72 -51.93 -0.40 0.85 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 298.91 15.07 4.50 4.50 Total: -1.00 -29.41 298.91 -8.00 -37.41 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.93 Total: 0.36 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -1.83 Total: -14.15 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.20 Total: -34.22 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.41 -8.00 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260649165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.961 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds