Wall clock time and date at job start Mon Mar 30 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47161 * 2 1 4 4 C 1.52992 * 109.47258 * 239.99250 * 2 1 3 5 5 C 1.50702 * 109.46802 * 65.00127 * 4 2 1 6 6 H 1.08002 * 120.00112 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00069 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99736 * 0.02562 * 7 5 4 9 9 Si 1.86792 * 120.00188 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47263 * 89.99971 * 9 7 5 11 11 H 1.48503 * 109.47308 * 210.00412 * 9 7 5 12 12 H 1.48509 * 109.47178 * 330.00414 * 9 7 5 13 13 C 1.53006 * 109.47051 * 119.99510 * 2 1 3 14 14 H 1.09000 * 110.88586 * 56.19015 * 13 2 1 15 15 C 1.54861 * 111.03855 * 292.29416 * 13 2 1 16 16 C 1.51282 * 104.20513 * 217.09850 * 15 13 2 17 17 O 1.21284 * 124.94166 * 196.28279 * 16 15 13 18 18 N 1.34415 * 110.11730 * 16.26751 * 16 15 13 19 19 C 1.46506 * 124.35027 * 180.42850 * 18 16 15 20 20 C 1.53001 * 117.49901 * 8.59574 * 19 18 16 21 21 C 1.53001 * 60.00120 * 252.51462 * 20 19 18 22 22 C 1.46760 * 111.30303 * 0.40627 * 18 16 15 23 23 H 1.09005 * 109.47159 * 300.00139 * 1 2 3 24 24 H 1.08997 * 109.47202 * 60.00450 * 1 2 3 25 25 H 1.09007 * 109.46821 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47439 * 184.99701 * 4 2 1 27 27 H 1.09000 * 109.47399 * 305.00314 * 4 2 1 28 28 H 0.96998 * 120.00046 * 180.02562 * 8 7 5 29 29 H 1.08998 * 110.46775 * 98.42753 * 15 13 2 30 30 H 1.08998 * 110.49332 * 335.78937 * 15 13 2 31 31 H 1.08997 * 115.55398 * 154.30854 * 19 18 16 32 32 H 1.09007 * 117.49786 * 0.02562 * 20 19 18 33 33 H 1.08998 * 117.49888 * 145.02536 * 20 19 18 34 34 H 1.08998 * 117.49511 * 252.51140 * 21 20 19 35 35 H 1.08998 * 117.50147 * 107.48797 * 21 20 19 36 36 H 1.09002 * 110.24740 * 101.98470 * 22 18 16 37 37 H 1.09002 * 110.24616 * 223.89995 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 1.6414 0.0568 -2.4765 6 1 1.0800 0.9740 -2.3757 7 6 1.9933 -0.4020 -3.7282 8 7 2.6765 -1.5191 -3.8509 9 14 1.4986 0.5622 -5.2496 10 1 2.5632 1.5426 -5.5823 11 1 1.3122 -0.3720 -6.3889 12 1 0.2267 1.2827 -4.9872 13 6 2.0400 -0.7212 1.2494 14 1 1.6353 -1.7316 1.3072 15 6 1.7084 0.0836 2.5302 16 6 2.9147 -0.1209 3.4199 17 8 2.9450 0.1036 4.6114 18 7 3.9478 -0.5880 2.6980 19 6 5.2671 -0.9040 3.2512 20 6 5.4191 -0.8795 4.7734 21 6 6.0410 0.2312 3.9245 22 6 3.5843 -0.7413 1.2844 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 3.1264 -0.7996 -1.2055 27 1 1.6054 -1.7199 -1.2949 28 1 2.9244 -1.8417 -4.7314 29 1 0.8113 -0.3114 3.0070 30 1 1.5826 1.1405 2.2949 31 1 5.8425 -1.6473 2.6995 32 1 4.5374 -0.6287 5.3633 33 1 6.0946 -1.6070 5.2235 34 1 7.1256 0.2343 3.8162 35 1 5.5686 1.2130 3.9559 36 1 3.9857 0.0865 0.6997 37 1 3.9579 -1.6903 0.8996 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260649165.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:15 Heat of formation + Delta-G solvation = -39.457871 kcal Electronic energy + Delta-G solvation = -17044.063042 eV Core-core repulsion = 14399.868151 eV Total energy + Delta-G solvation = -2644.194890 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.72104 -38.44100 -37.63793 -35.77043 -34.10860 -31.09569 -28.80645 -28.40441 -25.29654 -23.98918 -23.44901 -22.91331 -20.57929 -20.08462 -18.43090 -17.84149 -17.39014 -16.49911 -16.17494 -15.73318 -15.17700 -14.82782 -14.63196 -14.35248 -14.13380 -14.01644 -13.83082 -13.31587 -12.83662 -12.75585 -12.52633 -12.50236 -12.27742 -12.17147 -12.02371 -11.76258 -11.44214 -11.34371 -10.97699 -10.92328 -10.45669 -10.42817 -9.51505 -8.12054 -6.18956 1.43402 1.44692 1.47355 1.54190 1.92162 2.46237 2.88744 3.22743 3.40526 3.55959 3.82113 3.87059 3.98382 4.04621 4.21314 4.49380 4.53986 4.64182 4.66897 4.73805 4.77134 4.79924 4.96047 4.98040 5.00991 5.20875 5.26194 5.36701 5.47109 5.57039 5.64068 5.69284 5.91342 5.97298 6.09148 6.37202 6.97953 7.13087 7.48948 8.99319 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037104 B = 0.005446 C = 0.004988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.463534 B = 5139.869956 C = 5611.964827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.065 4.065 3 H 0.061 0.939 4 C 0.030 3.970 5 C -0.526 4.526 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.950 3.050 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.265 1.265 13 C -0.082 4.082 14 H 0.090 0.910 15 C -0.140 4.140 16 C 0.510 3.490 17 O -0.570 6.570 18 N -0.590 5.590 19 C 0.064 3.936 20 C -0.191 4.191 21 C -0.185 4.185 22 C 0.113 3.887 23 H 0.066 0.934 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.003 0.997 27 H -0.007 1.007 28 H 0.260 0.740 29 H 0.114 0.886 30 H 0.113 0.887 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 1.444 11.935 12.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.084 4.084 3 H 0.079 0.921 4 C -0.007 4.007 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.574 5.574 9 Si 0.776 3.224 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.189 1.189 13 C -0.101 4.101 14 H 0.108 0.892 15 C -0.180 4.180 16 C 0.300 3.700 17 O -0.451 6.451 18 N -0.321 5.321 19 C -0.039 4.039 20 C -0.228 4.228 21 C -0.223 4.223 22 C -0.009 4.009 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.011 0.989 28 H 0.069 0.931 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.167 0.833 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.793 1.424 12.422 12.811 hybrid contribution -0.007 0.235 -1.217 1.239 sum 2.786 1.659 11.205 11.665 Atomic orbital electron populations 1.21677 0.94704 1.01250 1.01139 1.21048 0.96333 0.98436 0.92589 0.92056 1.19079 0.95164 0.94538 0.91925 1.21692 1.34046 1.08498 0.92221 0.92230 1.25808 0.95498 0.95959 1.02237 1.70071 1.40477 1.22770 1.24065 0.85665 0.78947 0.78494 0.79251 1.20226 1.21350 1.18923 1.22186 0.93454 1.00353 0.94117 0.89170 1.22488 0.96826 1.03721 0.94976 1.21430 0.86264 0.75183 0.87100 1.90554 1.84536 1.54378 1.15659 1.47884 1.10938 1.63474 1.09795 1.21894 0.84768 1.02078 0.95193 1.23676 1.04318 1.02149 0.92697 1.23348 1.00718 0.94010 1.04255 1.22214 0.96131 1.02867 0.79689 0.91487 0.93690 0.93568 0.97910 0.98885 0.93131 0.86734 0.86871 0.83335 0.87848 0.86236 0.85738 0.90705 0.91082 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.86 71.98 0.64 -3.55 16 2 C -0.07 -2.27 1.70 -10.79 -0.02 -2.29 16 3 H 0.06 2.15 8.06 -2.39 -0.02 2.13 16 4 C 0.03 1.40 4.31 29.85 0.13 1.53 16 5 C -0.53 -27.63 8.41 25.60 0.22 -27.41 16 6 H 0.06 3.02 7.06 -2.91 -0.02 3.00 16 7 C 0.00 0.13 5.46 84.66 0.46 0.59 16 8 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 9 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 13 C -0.08 -2.36 2.69 -9.65 -0.03 -2.39 16 14 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 15 C -0.14 -3.62 5.66 30.67 0.17 -3.45 16 16 C 0.51 15.60 7.88 87.90 0.69 16.29 16 17 O -0.57 -20.34 14.69 -3.04 -0.04 -20.39 16 18 N -0.59 -16.69 3.27 -794.02 -2.60 -19.28 16 19 C 0.06 1.55 6.88 44.99 0.31 1.86 16 20 C -0.19 -4.52 9.77 30.60 0.30 -4.22 16 21 C -0.18 -4.17 10.34 30.60 0.32 -3.86 16 22 C 0.11 3.27 5.75 86.83 0.50 3.77 16 23 H 0.07 1.70 7.56 -2.38 -0.02 1.69 16 24 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 25 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 26 H 0.00 0.13 7.01 -2.38 -0.02 0.11 16 27 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 28 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 29 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.11 2.74 7.85 -2.39 -0.02 2.72 16 31 H 0.15 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.10 3.11 5.30 -2.38 -0.01 3.10 16 33 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.07 2.19 7.72 -2.39 -0.02 2.17 16 37 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -62.91 298.91 4.39 -58.52 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 1.03 Total: 13.48 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.69 Total: -23.13 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: -2.31 Total: -73.24 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.04 Total: -20.39 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -62.91 4.39 -58.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260649165.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.059 kcal (2) G-P(sol) polarization free energy of solvation -62.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds