Wall clock time and date at job start Mon Mar 30 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 H 1.08994 * 110.85925 * 63.78932 * 13 2 1 15 15 C 1.54637 * 110.96873 * 187.61938 * 13 2 1 16 16 C 1.51277 * 104.19590 * 93.31909 * 15 13 2 17 17 O 1.21279 * 124.94156 * 196.21578 * 16 15 13 18 18 N 1.34417 * 110.11674 * 16.25493 * 16 15 13 19 19 C 1.46498 * 124.35024 * 180.42738 * 18 16 15 20 20 C 1.52996 * 117.49824 * 8.72368 * 19 18 16 21 21 C 1.52991 * 117.50016 * 300.06136 * 19 18 16 22 22 C 1.46763 * 111.30192 * 0.40526 * 18 16 15 23 23 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 24 24 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 25 25 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 27 27 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 28 28 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 29 29 H 1.09003 * 110.48296 * 211.99963 * 15 13 2 30 30 H 1.09003 * 110.48481 * 334.63616 * 15 13 2 31 31 H 1.09006 * 115.55100 * 154.39109 * 19 18 16 32 32 H 1.08995 * 117.50071 * 359.97438 * 20 19 18 33 33 H 1.08998 * 117.50142 * 145.02014 * 20 19 18 34 34 H 1.09005 * 117.50202 * 214.97807 * 21 19 18 35 35 H 1.09003 * 117.49795 * 359.97438 * 21 19 18 36 36 H 1.09001 * 110.24544 * 223.98620 * 22 18 16 37 37 H 1.08995 * 110.25081 * 101.98285 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 1 1.7452 -1.7706 1.2390 15 6 3.5738 -0.5779 1.3836 16 6 3.7567 0.6350 2.2690 17 8 4.7927 1.2529 2.3953 18 7 2.6044 0.9278 2.8960 19 6 2.4289 2.0494 3.8220 20 6 3.5727 3.0594 3.9328 21 6 3.3068 2.0753 5.0747 22 6 1.5444 -0.0203 2.5335 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0275 0.0005 26 1 1.6053 -1.7198 -1.2952 27 1 3.1262 -0.7995 -1.2056 28 1 2.9362 -2.0177 -3.0611 29 1 3.9997 -1.4630 1.8562 30 1 4.0282 -0.4096 0.4072 31 1 1.4113 2.4295 3.9126 32 1 4.4559 2.8892 3.3172 33 1 3.3077 4.1039 4.0968 34 1 2.8670 2.4727 5.9894 35 1 4.0147 1.2575 5.2101 36 1 0.6134 0.5117 2.3375 37 1 1.4021 -0.7500 3.3305 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260649199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:23 Heat of formation + Delta-G solvation = -23.105170 kcal Electronic energy + Delta-G solvation = -17264.708010 eV Core-core repulsion = 14621.222226 eV Total energy + Delta-G solvation = -2643.485784 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61869 -37.20373 -36.51924 -34.33201 -32.25204 -29.85781 -27.69204 -26.03813 -23.95766 -22.75685 -22.42889 -21.64603 -19.36485 -18.91798 -16.93780 -16.66090 -15.93270 -15.38123 -14.59122 -14.04859 -13.78985 -13.70145 -13.62375 -13.15894 -13.01635 -12.38581 -11.95995 -11.74462 -11.56469 -11.50916 -11.38472 -11.06599 -10.86297 -10.73493 -10.46430 -10.21379 -10.09348 -9.89046 -9.44281 -9.27470 -8.53696 -8.37827 -8.30441 -6.33862 -4.02597 2.72413 2.99022 3.43930 3.48143 3.63421 3.83962 4.53984 4.54798 4.67303 4.79411 4.94369 4.97491 5.05975 5.27365 5.42382 5.46677 5.58672 5.60945 5.68725 5.84066 5.94544 5.95522 6.10411 6.11653 6.23313 6.28522 6.43056 6.76778 6.78655 6.91294 6.97861 7.23129 7.38291 7.52791 8.23179 8.35852 8.48404 8.90870 9.68558 11.06658 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035724 B = 0.005727 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.591995 B = 4888.014675 C = 4961.726636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 H 0.058 0.942 4 C 0.014 3.986 5 C -0.596 4.596 6 H 0.049 0.951 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C -0.095 4.095 14 H 0.093 0.907 15 C -0.154 4.154 16 C 0.523 3.477 17 O -0.536 6.536 18 N -0.592 5.592 19 C 0.082 3.918 20 C -0.191 4.191 21 C -0.193 4.193 22 C 0.105 3.895 23 H 0.034 0.966 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.008 0.992 27 H 0.009 0.991 28 H 0.268 0.732 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 3.486 15.423 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.023 4.023 5 C -0.635 4.635 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.551 5.551 9 Si 0.897 3.103 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.210 1.210 13 C -0.113 4.113 14 H 0.111 0.889 15 C -0.194 4.194 16 C 0.313 3.687 17 O -0.414 6.414 18 N -0.324 5.324 19 C -0.022 4.022 20 C -0.229 4.229 21 C -0.232 4.232 22 C -0.018 4.018 23 H 0.053 0.947 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.028 0.972 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.131 0.869 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.810 3.869 13.868 14.670 hybrid contribution -0.234 -0.038 1.763 1.779 sum -3.044 3.831 15.632 16.380 Atomic orbital electron populations 1.21767 0.95808 1.01012 1.00524 1.21069 0.95341 0.99102 0.93512 0.92312 1.19295 0.95514 0.95476 0.91998 1.22047 1.38850 1.10266 0.92293 0.93283 1.25787 0.94638 0.97139 1.01345 1.70758 1.35786 1.15033 1.33545 0.83552 0.76330 0.74984 0.75443 1.21535 1.21558 1.21044 1.22361 0.93499 1.00898 0.94589 0.88871 1.22504 0.98333 0.96767 1.01786 1.21089 0.82425 0.85568 0.79652 1.90559 1.29777 1.55572 1.65528 1.47658 1.12430 1.28272 1.44071 1.21468 0.96872 0.90682 0.93144 1.23744 1.01884 0.95095 1.02141 1.23337 1.03878 1.03006 0.92993 1.22357 0.91044 0.91550 0.96827 0.94680 0.91608 0.93433 0.97358 0.97246 0.92120 0.88378 0.86889 0.85633 0.85042 0.88697 0.88472 0.88925 0.89786 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.77 37.16 0.33 -1.97 16 2 C -0.07 -1.36 1.91 -90.62 -0.17 -1.53 16 3 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 4 C 0.01 0.34 3.67 -27.88 -0.10 0.23 16 5 C -0.60 -16.45 8.41 -34.44 -0.29 -16.73 16 6 H 0.05 1.34 7.06 -52.49 -0.37 0.97 16 7 C 0.01 0.41 5.46 -17.82 -0.10 0.32 16 8 N -0.91 -27.72 13.65 55.43 0.76 -26.97 16 9 Si 1.07 25.32 29.90 -169.99 -5.08 20.23 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C -0.09 -1.42 2.68 -88.98 -0.24 -1.66 16 14 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 15 C -0.15 -2.46 6.26 -26.74 -0.17 -2.62 16 16 C 0.52 8.96 7.88 -10.86 -0.09 8.87 16 17 O -0.54 -10.65 14.69 5.56 0.08 -10.57 16 18 N -0.59 -8.53 3.27 -164.85 -0.54 -9.07 16 19 C 0.08 1.03 6.88 -67.94 -0.47 0.56 16 20 C -0.19 -2.48 9.77 -26.70 -0.26 -2.74 16 21 C -0.19 -2.21 10.34 -26.70 -0.28 -2.49 16 22 C 0.10 1.32 6.75 -3.12 -0.02 1.30 16 23 H 0.03 0.49 6.14 -51.93 -0.32 0.17 16 24 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 27 H 0.01 0.24 6.32 -51.93 -0.33 -0.09 16 28 H 0.27 8.05 7.22 -40.82 -0.29 7.76 16 29 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.11 2.08 6.32 -51.93 -0.33 1.75 16 31 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.13 2.14 5.30 -51.93 -0.28 1.87 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.00 5.83 -51.93 -0.30 0.69 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 294.02 15.07 4.43 4.43 Total: -1.00 -31.60 294.02 -7.80 -39.40 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.60 Total: 1.01 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.85 Total: -18.48 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.22 Total: -36.04 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.23 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.60 -7.80 -39.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260649199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.300 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds