Wall clock time and date at job start Mon Mar 30 2020 03:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 H 1.08994 * 110.85925 * 63.78932 * 13 2 1 15 15 C 1.54637 * 110.96873 * 187.61938 * 13 2 1 16 16 C 1.51277 * 104.19590 * 93.31909 * 15 13 2 17 17 O 1.21279 * 124.94156 * 196.21578 * 16 15 13 18 18 N 1.34417 * 110.11674 * 16.25493 * 16 15 13 19 19 C 1.46498 * 124.35024 * 180.42738 * 18 16 15 20 20 C 1.52996 * 117.49824 * 8.72368 * 19 18 16 21 21 C 1.52991 * 117.50016 * 300.06136 * 19 18 16 22 22 C 1.46763 * 111.30192 * 0.40526 * 18 16 15 23 23 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 24 24 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 25 25 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 27 27 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 28 28 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 29 29 H 1.09003 * 110.48296 * 211.99963 * 15 13 2 30 30 H 1.09003 * 110.48481 * 334.63616 * 15 13 2 31 31 H 1.09006 * 115.55100 * 154.39109 * 19 18 16 32 32 H 1.08995 * 117.50071 * 359.97438 * 20 19 18 33 33 H 1.08998 * 117.50142 * 145.02014 * 20 19 18 34 34 H 1.09005 * 117.50202 * 214.97807 * 21 19 18 35 35 H 1.09003 * 117.49795 * 359.97438 * 21 19 18 36 36 H 1.09001 * 110.24544 * 223.98620 * 22 18 16 37 37 H 1.08995 * 110.25081 * 101.98285 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 1 1.7452 -1.7706 1.2390 15 6 3.5738 -0.5779 1.3836 16 6 3.7567 0.6350 2.2690 17 8 4.7927 1.2529 2.3953 18 7 2.6044 0.9278 2.8960 19 6 2.4289 2.0494 3.8220 20 6 3.5727 3.0594 3.9328 21 6 3.3068 2.0753 5.0747 22 6 1.5444 -0.0203 2.5335 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0275 0.0005 26 1 1.6053 -1.7198 -1.2952 27 1 3.1262 -0.7995 -1.2056 28 1 2.9362 -2.0177 -3.0611 29 1 3.9997 -1.4630 1.8562 30 1 4.0282 -0.4096 0.4072 31 1 1.4113 2.4295 3.9126 32 1 4.4559 2.8892 3.3172 33 1 3.3077 4.1039 4.0968 34 1 2.8670 2.4727 5.9894 35 1 4.0147 1.2575 5.2101 36 1 0.6134 0.5117 2.3375 37 1 1.4021 -0.7500 3.3305 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260649199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:23 Heat of formation + Delta-G solvation = -42.065389 kcal Electronic energy + Delta-G solvation = -17265.530187 eV Core-core repulsion = 14621.222226 eV Total energy + Delta-G solvation = -2644.307961 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.84071 -38.56101 -37.66608 -36.00040 -34.07258 -31.15434 -29.26475 -27.52357 -25.73874 -23.88931 -23.52545 -23.08200 -20.80080 -20.13981 -18.85724 -17.93985 -17.20090 -16.60765 -15.80745 -15.63898 -15.51123 -15.15505 -14.98445 -14.39704 -14.20727 -14.05877 -13.47713 -13.36369 -12.97072 -12.80267 -12.65622 -12.53815 -12.46064 -12.02088 -11.97188 -11.68170 -11.50199 -11.39834 -11.10650 -10.57232 -10.53558 -10.48913 -9.50814 -8.62650 -6.31457 1.42871 1.51322 1.60413 1.77185 1.91881 2.57490 2.87736 3.20728 3.37826 3.46332 3.76754 3.82849 3.94318 3.99984 4.15147 4.32937 4.47854 4.52728 4.64088 4.66628 4.73323 4.74563 4.84452 4.87149 5.00649 5.08056 5.15052 5.26370 5.32024 5.40837 5.51764 5.68642 5.71747 6.05352 6.08982 6.26054 6.66452 7.09751 7.48087 8.78439 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035724 B = 0.005727 C = 0.005642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.591995 B = 4888.014675 C = 4961.726636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 H 0.035 0.965 4 C 0.015 3.985 5 C -0.606 4.606 6 H 0.047 0.953 7 C -0.041 4.041 8 N -0.942 5.942 9 Si 1.113 2.887 10 H -0.270 1.270 11 H -0.274 1.274 12 H -0.286 1.286 13 C -0.088 4.088 14 H 0.112 0.888 15 C -0.155 4.155 16 C 0.511 3.489 17 O -0.576 6.576 18 N -0.588 5.588 19 C 0.073 3.927 20 C -0.210 4.210 21 C -0.175 4.175 22 C 0.111 3.889 23 H 0.075 0.925 24 H 0.038 0.962 25 H 0.054 0.946 26 H -0.004 1.004 27 H -0.014 1.014 28 H 0.256 0.744 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.131 0.869 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.772 4.048 17.304 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.081 4.081 3 H 0.054 0.946 4 C -0.022 4.022 5 C -0.644 4.644 6 H 0.065 0.935 7 C -0.238 4.238 8 N -0.581 5.581 9 Si 0.935 3.065 10 H -0.195 1.195 11 H -0.199 1.199 12 H -0.212 1.212 13 C -0.107 4.107 14 H 0.130 0.870 15 C -0.195 4.195 16 C 0.301 3.699 17 O -0.457 6.457 18 N -0.319 5.319 19 C -0.030 4.030 20 C -0.247 4.247 21 C -0.213 4.213 22 C -0.010 4.010 23 H 0.094 0.906 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.014 0.986 27 H 0.005 0.995 28 H 0.066 0.934 29 H 0.139 0.861 30 H 0.096 0.904 31 H 0.178 0.822 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -5.201 4.429 15.783 17.198 hybrid contribution 0.530 -0.202 1.206 1.333 sum -4.671 4.227 16.989 18.119 Atomic orbital electron populations 1.21706 0.93859 1.01752 1.01236 1.20874 0.96839 0.97376 0.93055 0.94647 1.19236 0.94106 0.95041 0.93794 1.22485 1.37933 1.10252 0.93707 0.93465 1.27245 0.94181 0.97331 1.05002 1.70886 1.37840 1.16369 1.32967 0.82977 0.76747 0.74579 0.72166 1.19535 1.19906 1.21215 1.22261 0.92495 1.01796 0.94151 0.86981 1.22478 0.99270 0.97595 1.00115 1.21281 0.82855 0.85666 0.80118 1.90552 1.31412 1.56756 1.66965 1.47794 1.11776 1.28807 1.43546 1.21920 0.98277 0.89744 0.93018 1.23670 1.01087 0.96858 1.03122 1.23356 1.02758 1.01553 0.93652 1.22488 0.90583 0.91846 0.96105 0.90603 0.94275 0.92645 0.98588 0.99538 0.93444 0.86093 0.90401 0.82220 0.88911 0.86442 0.85104 0.90770 0.88030 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.12 8.77 71.98 0.63 -3.49 16 2 C -0.06 -2.34 1.91 -10.79 -0.02 -2.37 16 3 H 0.03 1.47 8.14 -2.39 -0.02 1.46 16 4 C 0.02 0.75 3.67 29.85 0.11 0.86 16 5 C -0.61 -34.05 8.41 25.60 0.22 -33.83 16 6 H 0.05 2.61 7.06 -2.91 -0.02 2.59 16 7 C -0.04 -2.35 5.46 84.65 0.46 -1.89 16 8 N -0.94 -58.62 13.65 21.45 0.29 -58.33 16 9 Si 1.11 51.03 29.90 68.60 2.05 53.08 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 C -0.09 -2.50 2.68 -9.73 -0.03 -2.52 16 14 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 15 C -0.15 -4.96 6.26 30.59 0.19 -4.76 16 16 C 0.51 17.53 7.88 87.90 0.69 18.22 16 17 O -0.58 -23.78 14.69 -3.03 -0.04 -23.83 16 18 N -0.59 -15.61 3.27 -794.07 -2.60 -18.21 16 19 C 0.07 1.60 6.88 44.99 0.31 1.91 16 20 C -0.21 -5.19 9.77 30.62 0.30 -4.89 16 21 C -0.17 -3.53 10.34 30.62 0.32 -3.21 16 22 C 0.11 2.34 6.75 86.83 0.59 2.93 16 23 H 0.08 1.81 6.14 -2.39 -0.01 1.79 16 24 H 0.04 1.45 6.95 -2.39 -0.02 1.43 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.00 -0.22 8.01 -2.39 -0.02 -0.23 16 27 H -0.01 -0.73 6.32 -2.39 -0.02 -0.75 16 28 H 0.26 16.02 7.22 -92.71 -0.67 15.35 16 29 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.08 3.05 6.32 -2.39 -0.02 3.04 16 31 H 0.16 2.42 8.14 -2.38 -0.02 2.40 16 32 H 0.09 3.12 5.30 -2.39 -0.01 3.11 16 33 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.10 1.85 5.83 -2.39 -0.01 1.84 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -72.18 294.02 4.62 -67.57 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 1.15 Total: 12.76 kcal Atomic # 6 Polarization: -36.81 SS G_CDS: 3.77 Total: -33.04 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -2.30 Total: -76.53 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.04 Total: -23.83 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -72.18 4.62 -67.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260649199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.502 kcal (2) G-P(sol) polarization free energy of solvation -72.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds